RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 AEBP2Q6ZN18 517 aaPredicted RBP22.42■■□□□ 1.18
PRPF40A-208ENST00000472760 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
PRPF40A-208ENST00000472760 PHF23Q9BUL5 403 aaPredicted RBP19.6■□□□□ 0.73
PRPF40A-208ENST00000472760 SENP3Q9H4L4 574 aaPredicted RBP19.02■□□□□ 0.64
PRPF40A-208ENST00000472760 PLPPR3Q6T4P5 718 aa18.25■□□□□ 0.51
PRPF40A-208ENST00000472760 FOXD1Q16676 465 aa17.59■□□□□ 0.41
PRPF40A-208ENST00000472760 ADRA2BP18089 450 aa17.22■□□□□ 0.35
PRPF40A-208ENST00000472760 PPP6R1Q9UPN7 881 aa17.19■□□□□ 0.34
PRPF40A-208ENST00000472760 PIAS4Q8N2W9 510 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-208ENST00000472760 KCNA4P22459 653 aa16.13■□□□□ 0.17
PRPF40A-208ENST00000472760 PPP4R3CPQ6ZMV5 832 aa16.13■□□□□ 0.17
PRPF40A-208ENST00000472760 MSH5O43196 834 aa16.11■□□□□ 0.17
PRPF40A-208ENST00000472760 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
PRPF40A-208ENST00000472760 SCAF1Q9H7N4 1312 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-208ENST00000472760 CNKSR2Q8WXI2 1034 aa15.6■□□□□ 0.09
PRPF40A-208ENST00000472760 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
PRPF40A-208ENST00000472760 MAPK8IP2Q13387 824 aaPredicted RBP15.52■□□□□ 0.08
PRPF40A-208ENST00000472760 SLC4A1APQ9BWU0 796 aaKnown RBP15.45■□□□□ 0.06
PRPF40A-208ENST00000472760 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
PRPF40A-208ENST00000472760 POTEDQ86YR6 584 aa15.25■□□□□ 0.03
PRPF40A-208ENST00000472760 DMRT2Q9Y5R5 561 aa15.22■□□□□ 0.03
PRPF40A-208ENST00000472760 RNF216Q9NWF9 866 aaPredicted RBP15.2■□□□□ 0.02
PRPF40A-208ENST00000472760 CSRNP3Q8WYN3 585 aa15.04■□□□□ -0
PRPF40A-208ENST00000472760 HOXD11P31277 338 aaPredicted RBP15.03■□□□□ -0
PRPF40A-208ENST00000472760 DNAJC5BQ9UF47 199 aa15.01□□□□□ -0.01
PRPF40A-208ENST00000472760 ZBTB22O15209 634 aa14.81□□□□□ -0.04
PRPF40A-208ENST00000472760 FOXD4L1Q9NU39 408 aa14.75□□□□□ -0.05
PRPF40A-208ENST00000472760 DCAF8L1A6NGE4 600 aa14.62□□□□□ -0.07
PRPF40A-208ENST00000472760 SLC4A2P04920 1241 aa14.59□□□□□ -0.07
PRPF40A-208ENST00000472760 MYCNP04198 464 aaPredicted RBP14.39□□□□□ -0.11
PRPF40A-208ENST00000472760 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.39□□□□□ -0.117e-10■■■□□ 18.8
PRPF40A-208ENST00000472760 ATXN8OSP0DMR3 200 aa14.21□□□□□ -0.13
PRPF40A-208ENST00000472760 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.13□□□□□ -0.15
PRPF40A-208ENST00000472760 HNRNPUL2Q1KMD3 747 aaKnown RBP14.13□□□□□ -0.15
PRPF40A-208ENST00000472760 U3KPZ7 1027 aaPredicted RBP14.13□□□□□ -0.15
PRPF40A-208ENST00000472760 SAMD1Q6SPF0 538 aaPredicted RBP14.08□□□□□ -0.16
PRPF40A-208ENST00000472760 ATF5Q9Y2D1 282 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-208ENST00000472760 APLP2Q06481 763 aa13.91□□□□□ -0.18
PRPF40A-208ENST00000472760 RNF39Q9H2S5 420 aa13.81□□□□□ -0.2
PRPF40A-208ENST00000472760 ZNF219Q9P2Y4 722 aaPredicted RBP13.73□□□□□ -0.21
PRPF40A-208ENST00000472760 C1QBPQ07021 282 aaKnown RBP13.69□□□□□ -0.22
PRPF40A-208ENST00000472760 TRHP20396 242 aaPredicted RBP13.65□□□□□ -0.22
PRPF40A-208ENST00000472760 SPINK5Q9NQ38 1064 aaPredicted RBP13.65□□□□□ -0.22
PRPF40A-208ENST00000472760 CAPN15O75808 1086 aa13.63□□□□□ -0.23
PRPF40A-208ENST00000472760 CACNB1Q02641 598 aaPredicted RBP13.61□□□□□ -0.23
PRPF40A-208ENST00000472760 FKBP8Q14318 412 aa13.61□□□□□ -0.23
PRPF40A-208ENST00000472760 POLA2Q14181 598 aa13.48□□□□□ -0.25
PRPF40A-208ENST00000472760 FBLN2P98095 1184 aa13.4□□□□□ -0.26
PRPF40A-208ENST00000472760 ABCB7O75027 752 aa13.38□□□□□ -0.27
PRPF40A-208ENST00000472760 MKRN4PQ13434 485 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-208ENST00000472760 ZBTB12Q9Y330 459 aaPredicted RBP13.29□□□□□ -0.28
PRPF40A-208ENST00000472760 DSG3P32926 999 aa13.27□□□□□ -0.29
PRPF40A-208ENST00000472760 SPDYE4A6NLX3 237 aa13.26□□□□□ -0.29
PRPF40A-208ENST00000472760 FBXO3Q9UK99 471 aa13.05□□□□□ -0.32
PRPF40A-208ENST00000472760 PROM2Q8N271 834 aa13.03□□□□□ -0.32
PRPF40A-208ENST00000472760 AMER1Q5JTC6 1135 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-208ENST00000472760 OSCARQ8IYS5 282 aa12.99□□□□□ -0.33
PRPF40A-208ENST00000472760 ZNF692Q9BU19 519 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-208ENST00000472760 RTN4Q9NQC3 1192 aaKnown RBP12.96□□□□□ -0.33
PRPF40A-208ENST00000472760 SPDYE2BA6NHP3 402 aa12.95□□□□□ -0.34
PRPF40A-208ENST00000472760 SPDYE6P0CI01 402 aa12.95□□□□□ -0.34
PRPF40A-208ENST00000472760 SPDYE2Q495Y8 402 aa12.95□□□□□ -0.34
PRPF40A-208ENST00000472760 SSUH2Q9Y2M2 353 aa12.85□□□□□ -0.35
PRPF40A-208ENST00000472760 VASPP50552 380 aaPredicted RBP12.83□□□□□ -0.36
PRPF40A-208ENST00000472760 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
PRPF40A-208ENST00000472760 STAG3Q9UJ98 1225 aa12.72□□□□□ -0.37
PRPF40A-208ENST00000472760 IFNLR1Q8IU57 520 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-208ENST00000472760 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-208ENST00000472760 PLCD3Q8N3E9 789 aa12.6□□□□□ -0.39
PRPF40A-208ENST00000472760 KLHL34Q8N239 644 aa12.59□□□□□ -0.39
PRPF40A-208ENST00000472760 MIER1Q8N108 512 aa12.58□□□□□ -0.4
PRPF40A-208ENST00000472760 AKT1S1Q96B36 256 aa12.58□□□□□ -0.4
PRPF40A-208ENST00000472760 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
PRPF40A-208ENST00000472760 SPDYE1Q8NFV5 336 aaPredicted RBP12.5□□□□□ -0.41
PRPF40A-208ENST00000472760 SPOCK2Q92563 424 aa12.5□□□□□ -0.41
PRPF40A-208ENST00000472760 REM2Q8IYK8 340 aaPredicted RBP12.45□□□□□ -0.42
PRPF40A-208ENST00000472760 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
PRPF40A-208ENST00000472760 ZBTB47Q9UFB7 747 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-208ENST00000472760 PRR29P0C7W0 189 aa12.38□□□□□ -0.43
PRPF40A-208ENST00000472760 PKD2Q13563 968 aa12.37□□□□□ -0.43
PRPF40A-208ENST00000472760 DCAF8L2P0C7V8 631 aa12.31□□□□□ -0.44
PRPF40A-208ENST00000472760 PITPNM1O00562 1244 aa12.29□□□□□ -0.44
PRPF40A-208ENST00000472760 SLC24A1O60721 1099 aa12.29□□□□□ -0.44
PRPF40A-208ENST00000472760 ECM2O94769 699 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-208ENST00000472760 CIZ1Q9ULV3 898 aaPredicted RBP12.27□□□□□ -0.45
PRPF40A-208ENST00000472760 CREBZFQ9NS37 354 aa12.26□□□□□ -0.45
PRPF40A-208ENST00000472760 NUBP1P53384 320 aa12.16□□□□□ -0.46
PRPF40A-208ENST00000472760 GSE1Q14687 1217 aa12.16□□□□□ -0.46
PRPF40A-208ENST00000472760 MNX1P50219 401 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-208ENST00000472760 DCAF8Q5TAQ9 597 aa12.14□□□□□ -0.47
PRPF40A-208ENST00000472760 TRIM41Q8WV44 630 aa12.14□□□□□ -0.47
PRPF40A-208ENST00000472760 RGL2O15211 777 aa12.12□□□□□ -0.47
PRPF40A-208ENST00000472760 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
PRPF40A-208ENST00000472760 FAM212AQ96EL1 285 aa12.1□□□□□ -0.47
PRPF40A-208ENST00000472760 CHADLQ6NUI6 762 aa12.08□□□□□ -0.48
PRPF40A-208ENST00000472760 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
PRPF40A-208ENST00000472760 PRKAR2AP13861 404 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-208ENST00000472760 PLCB2Q00722 1185 aa12.02□□□□□ -0.49
PRPF40A-208ENST00000472760 POTEHQ6S545 545 aa12□□□□□ -0.49
PRPF40A-208ENST00000472760 FARP1Q9Y4F1 1045 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms