RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 TOP2BQ02880 1626 aa13.18□□□□□ -0.3
HDAC3-206ENST00000471968 SHROOM2Q13796 1616 aa13.16□□□□□ -0.3
HDAC3-206ENST00000471968 COL17A1Q9UMD9 1497 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-206ENST00000471968 GRIN2AQ12879 1464 aa13.14□□□□□ -0.31
HDAC3-206ENST00000471968 FGD5Q6ZNL6 1462 aa13.14□□□□□ -0.31
HDAC3-206ENST00000471968 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-206ENST00000471968 PBRM1Q86U86 1689 aa13.13□□□□□ -0.31
HDAC3-206ENST00000471968 NUP160Q12769 1436 aa13.13□□□□□ -0.31
HDAC3-206ENST00000471968 CCDC88BA6NC98 1476 aa13.1□□□□□ -0.31
HDAC3-206ENST00000471968 ADCY10Q96PN6 1610 aa13.1□□□□□ -0.31
HDAC3-206ENST00000471968 PPRC1Q5VV67 1664 aaKnown RBP13.08□□□□□ -0.32
HDAC3-206ENST00000471968 PCF11O94913 1555 aaKnown RBP13.04□□□□□ -0.32
HDAC3-206ENST00000471968 JPH4Q96JJ6 628 aa13.03□□□□□ -0.32
HDAC3-206ENST00000471968 PTPRMP28827 1452 aa13.01□□□□□ -0.33
HDAC3-206ENST00000471968 HSPA2P54652 639 aa12.98□□□□□ -0.33
HDAC3-206ENST00000471968 ADAMTS12P58397 1594 aa12.97□□□□□ -0.33
HDAC3-206ENST00000471968 ABCA5Q8WWZ7 1642 aa12.96□□□□□ -0.33
HDAC3-206ENST00000471968 GLI2P10070 1586 aa12.96□□□□□ -0.33
HDAC3-206ENST00000471968 CUX1P39880 1505 aa12.93□□□□□ -0.34
HDAC3-206ENST00000471968 TEX14Q8IWB6 1497 aa12.93□□□□□ -0.34
HDAC3-206ENST00000471968 KIF21BO75037 1637 aa12.93□□□□□ -0.34
HDAC3-206ENST00000471968 ASXL2Q76L83 1435 aa12.93□□□□□ -0.34
HDAC3-206ENST00000471968 PLB1Q6P1J6 1458 aa12.91□□□□□ -0.34
HDAC3-206ENST00000471968 FHAD1B1AJZ9 1412 aa12.89□□□□□ -0.35
HDAC3-206ENST00000471968 ABCA10Q8WWZ4 1543 aa12.89□□□□□ -0.35
HDAC3-206ENST00000471968 ADAMTSL3P82987 1691 aa12.86□□□□□ -0.35
HDAC3-206ENST00000471968 MAP3K4Q9Y6R4 1608 aa12.85□□□□□ -0.35
HDAC3-206ENST00000471968 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
HDAC3-206ENST00000471968 ABCC2Q92887 1545 aa12.83□□□□□ -0.35
HDAC3-206ENST00000471968 EPRSP07814 1512 aaKnown RBP12.83□□□□□ -0.36
HDAC3-206ENST00000471968 RUSC2Q8N2Y8 1516 aa12.81□□□□□ -0.36
HDAC3-206ENST00000471968 PLPPR3Q6T4P5 718 aa12.8□□□□□ -0.36
HDAC3-206ENST00000471968 MADDQ8WXG6 1647 aa12.78□□□□□ -0.36
HDAC3-206ENST00000471968 PTPRGP23470 1445 aa12.78□□□□□ -0.36
HDAC3-206ENST00000471968 KIAA0586Q9BVV6 1533 aa12.78□□□□□ -0.36
HDAC3-206ENST00000471968 CUL7Q14999 1698 aa12.75□□□□□ -0.37
HDAC3-206ENST00000471968 ARID4BQ4LE39 1312 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-206ENST00000471968 MED1Q15648 1581 aaPredicted RBP12.71□□□□□ -0.37
HDAC3-206ENST00000471968 BCORL1Q5H9F3 1711 aa12.71□□□□□ -0.38
HDAC3-206ENST00000471968 DMRT2Q9Y5R5 561 aa12.7□□□□□ -0.38
HDAC3-206ENST00000471968 ERICH3Q5RHP9 1530 aa12.7□□□□□ -0.38
HDAC3-206ENST00000471968 RIMS1Q86UR5 1692 aaKnown RBP12.7□□□□□ -0.38
HDAC3-206ENST00000471968 PHF23Q9BUL5 403 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-206ENST00000471968 YEATS2Q9ULM3 1422 aa12.67□□□□□ -0.38
HDAC3-206ENST00000471968 MAGI3Q5TCQ9 1506 aa12.67□□□□□ -0.38
HDAC3-206ENST00000471968 CD109Q6YHK3 1445 aa12.66□□□□□ -0.38
HDAC3-206ENST00000471968 WRNQ14191 1432 aaPredicted RBP eCLIP12.65□□□□□ -0.38
HDAC3-206ENST00000471968 UHRF1BP1LA0JNW5 1464 aa12.65□□□□□ -0.38
HDAC3-206ENST00000471968 TNIKQ9UKE5 1360 aa12.64□□□□□ -0.39
HDAC3-206ENST00000471968 IQSEC2Q5JU85 1478 aa12.64□□□□□ -0.39
HDAC3-206ENST00000471968 UBAP1LF5GYI3 381 aa12.63□□□□□ -0.39
HDAC3-206ENST00000471968 UACAQ9BZF9 1416 aa12.62□□□□□ -0.39
HDAC3-206ENST00000471968 LTBP4Q8N2S1 1624 aa12.61□□□□□ -0.39
HDAC3-206ENST00000471968 KDM5BQ9UGL1 1544 aa12.61□□□□□ -0.39
HDAC3-206ENST00000471968 WDR7Q9Y4E6 1490 aa12.59□□□□□ -0.39
HDAC3-206ENST00000471968 STRCQ7RTU9 1775 aa12.59□□□□□ -0.39
HDAC3-206ENST00000471968 ARAP3Q8WWN8 1544 aa12.59□□□□□ -0.39
HDAC3-206ENST00000471968 ZCCHC11Q5TAX3 1644 aaKnown RBP12.59□□□□□ -0.39
HDAC3-206ENST00000471968 SRCAPQ6ZRS2 3230 aa12.57□□□□□ -0.4
HDAC3-206ENST00000471968 RAPGEF3O95398 923 aa12.57□□□□□ -0.4
HDAC3-206ENST00000471968 KCNH8Q96L42 1107 aa12.57□□□□□ -0.4
HDAC3-206ENST00000471968 CARMIL2Q6F5E8 1435 aa12.56□□□□□ -0.4
HDAC3-206ENST00000471968 HSPA1LP34931 641 aa12.56□□□□□ -0.4
HDAC3-206ENST00000471968 CFAP43Q8NDM7 1665 aa12.56□□□□□ -0.4
HDAC3-206ENST00000471968 PTPRTO14522 1441 aa12.54□□□□□ -0.4
HDAC3-206ENST00000471968 SCAF1Q9H7N4 1312 aaKnown RBP12.52□□□□□ -0.41
HDAC3-206ENST00000471968 PREX1Q8TCU6 1659 aa12.51□□□□□ -0.41
HDAC3-206ENST00000471968 MLECQ14165 292 aa12.48□□□□□ -0.41
HDAC3-206ENST00000471968 POGZQ7Z3K3 1410 aa12.47□□□□□ -0.41
HDAC3-206ENST00000471968 PIP4K2BP78356 416 aa12.46□□□□□ -0.41
HDAC3-206ENST00000471968 CEBPAP49715 358 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-206ENST00000471968 UHRF1BP1Q6BDS2 1440 aa12.45□□□□□ -0.42
HDAC3-206ENST00000471968 TTC37Q6PGP7 1564 aa12.44□□□□□ -0.42
HDAC3-206ENST00000471968 PHLDB1Q86UU1 1377 aa12.43□□□□□ -0.42
HDAC3-206ENST00000471968 ARHGEF40Q8TER5 1519 aa12.43□□□□□ -0.42
HDAC3-206ENST00000471968 FANCAO15360 1455 aa12.43□□□□□ -0.42
HDAC3-206ENST00000471968 FRMPD1Q5SYB0 1578 aa12.43□□□□□ -0.42
HDAC3-206ENST00000471968 ZNF335Q9H4Z2 1342 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-206ENST00000471968 RGS17Q9UGC6 210 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-206ENST00000471968 FER1L4A9Z1Z3 1794 aa12.41□□□□□ -0.42
HDAC3-206ENST00000471968 DISP1Q96F81 1524 aa12.39□□□□□ -0.43
HDAC3-206ENST00000471968 BIVM-ERCC5R4GMW8 1640 aa12.37□□□□□ -0.43
HDAC3-206ENST00000471968 SIGLEC1Q9BZZ2 1709 aa12.36□□□□□ -0.43
HDAC3-206ENST00000471968 AKNAQ7Z591 1439 aa12.36□□□□□ -0.43
HDAC3-206ENST00000471968 NEO1Q92859 1461 aa12.34□□□□□ -0.43
HDAC3-206ENST00000471968 TOM1O60784 492 aa12.34□□□□□ -0.43
HDAC3-206ENST00000471968 SENP3Q9H4L4 574 aaPredicted RBP12.34□□□□□ -0.43
HDAC3-206ENST00000471968 NCOA1Q15788 1441 aa12.34□□□□□ -0.43
HDAC3-206ENST00000471968 IQGAP2Q13576 1575 aa12.34□□□□□ -0.43
HDAC3-206ENST00000471968 IGF1RP08069 1367 aa12.31□□□□□ -0.44
HDAC3-206ENST00000471968 POTEAQ6S8J7 498 aa12.31□□□□□ -0.44
HDAC3-206ENST00000471968 ARHGEF12Q9NZN5 1544 aa12.3□□□□□ -0.44
HDAC3-206ENST00000471968 DENND4BO75064 1496 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-206ENST00000471968 ZFYVE16Q7Z3T8 1539 aa12.27□□□□□ -0.44
HDAC3-206ENST00000471968 SETD1AO15047 1707 aaKnown RBP12.27□□□□□ -0.45
HDAC3-206ENST00000471968 NCKAP5LQ9HCH0 1330 aa12.27□□□□□ -0.45
HDAC3-206ENST00000471968 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
HDAC3-206ENST00000471968 ABCA9Q8IUA7 1624 aa12.26□□□□□ -0.45
HDAC3-206ENST00000471968 SETD1BQ9UPS6 1966 aaKnown RBP12.25□□□□□ -0.45
HDAC3-206ENST00000471968 ARID3CA6NKF2 412 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms