RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 TOPBP1Q92547 1522 aa19.98■□□□□ 0.79
BRCA1-209ENST00000470026 PCF11O94913 1555 aaKnown RBP19.97■□□□□ 0.79
BRCA1-209ENST00000470026 EFCAB5A4FU69 1503 aa19.97■□□□□ 0.79
BRCA1-209ENST00000470026 CUL7Q14999 1698 aa19.96■□□□□ 0.79
BRCA1-209ENST00000470026 POLA1P09884 1462 aaPredicted RBP19.96■□□□□ 0.79
BRCA1-209ENST00000470026 MAPKBP1O60336 1514 aa19.96■□□□□ 0.79
BRCA1-209ENST00000470026 RAB3GAP2Q9H2M9 1393 aa19.96■□□□□ 0.79
BRCA1-209ENST00000470026 AQRO60306 1485 aaKnown RBP eCLIP19.94■□□□□ 0.78
BRCA1-209ENST00000470026 PHLDB1Q86UU1 1377 aa19.94■□□□□ 0.78
BRCA1-209ENST00000470026 YTHDC1Q96MU7 727 aaKnown RBP19.93■□□□□ 0.78
BRCA1-209ENST00000470026 RAD54L2Q9Y4B4 1467 aa19.93■□□□□ 0.78
BRCA1-209ENST00000470026 FYCO1Q9BQS8 1478 aa19.92■□□□□ 0.78
BRCA1-209ENST00000470026 SETD5Q9C0A6 1442 aa19.92■□□□□ 0.78
BRCA1-209ENST00000470026 CTTNBP2Q8WZ74 1663 aa19.9■□□□□ 0.78
BRCA1-209ENST00000470026 WDR97A6NE52 1622 aa19.89■□□□□ 0.78
BRCA1-209ENST00000470026 CASKIN1Q8WXD9 1431 aa19.88■□□□□ 0.77
BRCA1-209ENST00000470026 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.88■□□□□ 0.77
BRCA1-209ENST00000470026 NESP48681 1621 aa19.85■□□□□ 0.77
BRCA1-209ENST00000470026 FHOD3Q2V2M9 1422 aa19.85■□□□□ 0.77
BRCA1-209ENST00000470026 LAMC3Q9Y6N6 1575 aa19.85■□□□□ 0.77
BRCA1-209ENST00000470026 ITGAEP38570 1179 aa19.83■□□□□ 0.77
BRCA1-209ENST00000470026 ABCA5Q8WWZ7 1642 aa19.81■□□□□ 0.76
BRCA1-209ENST00000470026 URB2Q14146 1524 aaKnown RBP19.8■□□□□ 0.76
BRCA1-209ENST00000470026 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
BRCA1-209ENST00000470026 FMN1Q68DA7 1419 aa19.78■□□□□ 0.76
BRCA1-209ENST00000470026 SAMD9Q5K651 1589 aa19.77■□□□□ 0.76
BRCA1-209ENST00000470026 P3H3Q8IVL6 736 aa19.76■□□□□ 0.75
BRCA1-209ENST00000470026 TIMELESSQ9UNS1 1208 aa19.75■□□□□ 0.75
BRCA1-209ENST00000470026 FAM50AQ14320 339 aaKnown RBP19.72■□□□□ 0.75
BRCA1-209ENST00000470026 FGD6Q6ZV73 1430 aa19.71■□□□□ 0.75
BRCA1-209ENST00000470026 THOC2Q8NI27 1593 aaKnown RBP19.71■□□□□ 0.75
BRCA1-209ENST00000470026 GAPVD1Q14C86 1478 aa19.68■□□□□ 0.74
BRCA1-209ENST00000470026 LRRIQ1Q96JM4 1722 aa19.68■□□□□ 0.74
BRCA1-209ENST00000470026 GRIN2BQ13224 1484 aa19.67■□□□□ 0.74
BRCA1-209ENST00000470026 PDS5BQ9NTI5 1447 aa19.65■□□□□ 0.74
BRCA1-209ENST00000470026 KIF21AQ7Z4S6 1674 aa19.64■□□□□ 0.74
BRCA1-209ENST00000470026 SIN3AQ96ST3 1273 aa19.63■□□□□ 0.73
BRCA1-209ENST00000470026 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
BRCA1-209ENST00000470026 ATP1B4Q9UN42 357 aaPredicted RBP19.63■□□□□ 0.73
BRCA1-209ENST00000470026 HFM1A2PYH4 1435 aa19.62■□□□□ 0.73
BRCA1-209ENST00000470026 TARBP1Q13395 1621 aaKnown RBP19.61■□□□□ 0.73
BRCA1-209ENST00000470026 MTUS2Q5JR59 1369 aa19.6■□□□□ 0.73
BRCA1-209ENST00000470026 ARHGEF11O15085 1522 aa19.6■□□□□ 0.73
BRCA1-209ENST00000470026 EHBP1L1Q8N3D4 1523 aa19.59■□□□□ 0.73
BRCA1-209ENST00000470026 PTPRKQ15262 1439 aa19.59■□□□□ 0.73
BRCA1-209ENST00000470026 PTPN23Q9H3S7 1636 aa19.59■□□□□ 0.73
BRCA1-209ENST00000470026 NCOA2Q15596 1464 aa19.58■□□□□ 0.73
BRCA1-209ENST00000470026 MYOM3Q5VTT5 1437 aa19.58■□□□□ 0.73
BRCA1-209ENST00000470026 SUPT6HQ7KZ85 1726 aaKnown RBP19.58■□□□□ 0.73
BRCA1-209ENST00000470026 CCDC18Q5T9S5 1454 aa19.58■□□□□ 0.72
BRCA1-209ENST00000470026 PPP1R15AO75807 674 aaPredicted RBP19.58■□□□□ 0.72
BRCA1-209ENST00000470026 UACAQ9BZF9 1416 aa19.57■□□□□ 0.72
BRCA1-209ENST00000470026 UGGT2Q9NYU1 1516 aa19.55■□□□□ 0.72
BRCA1-209ENST00000470026 NAIPQ13075 1403 aa19.53■□□□□ 0.72
BRCA1-209ENST00000470026 TCOF1Q13428 1488 aaKnown RBP19.51■□□□□ 0.71
BRCA1-209ENST00000470026 SUPT16HQ9Y5B9 1047 aaKnown RBP19.51■□□□□ 0.71
BRCA1-209ENST00000470026 MAGI3Q5TCQ9 1506 aa19.5■□□□□ 0.71
BRCA1-209ENST00000470026 PBRM1Q86U86 1689 aa19.5■□□□□ 0.71
BRCA1-209ENST00000470026 HECW1Q76N89 1606 aa19.47■□□□□ 0.71
BRCA1-209ENST00000470026 ADAMTS12P58397 1594 aa19.46■□□□□ 0.71
BRCA1-209ENST00000470026 IQGAP2Q13576 1575 aa19.45■□□□□ 0.7
BRCA1-209ENST00000470026 DDX10Q13206 875 aaKnown RBP19.45■□□□□ 0.7
BRCA1-209ENST00000470026 KCNH8Q96L42 1107 aa19.45■□□□□ 0.7
BRCA1-209ENST00000470026 AKNAQ7Z591 1439 aa19.45■□□□□ 0.7
BRCA1-209ENST00000470026 KDM5BQ9UGL1 1544 aa19.45■□□□□ 0.7
BRCA1-209ENST00000470026 GCC2Q8IWJ2 1684 aa19.44■□□□□ 0.7
BRCA1-209ENST00000470026 TONSLQ96HA7 1378 aa19.43■□□□□ 0.7
BRCA1-209ENST00000470026 DNAJC5BQ9UF47 199 aa19.42■□□□□ 0.7
BRCA1-209ENST00000470026 CCER2I3L3R5 266 aa19.4■□□□□ 0.7
BRCA1-209ENST00000470026 EPRSP07814 1512 aaKnown RBP19.4■□□□□ 0.7
BRCA1-209ENST00000470026 WDR62O43379 1518 aa19.39■□□□□ 0.7
BRCA1-209ENST00000470026 MIA2Q96PC5 1412 aa19.39■□□□□ 0.69
BRCA1-209ENST00000470026 DENND4BO75064 1496 aaPredicted RBP19.37■□□□□ 0.69
BRCA1-209ENST00000470026 MRC2Q9UBG0 1479 aa19.37■□□□□ 0.69
BRCA1-209ENST00000470026 MYT1Q01538 1121 aa19.33■□□□□ 0.68
BRCA1-209ENST00000470026 CDK13Q14004 1512 aaKnown RBP19.31■□□□□ 0.68
BRCA1-209ENST00000470026 HIRIP3Q9BW71 556 aaPredicted RBP19.3■□□□□ 0.68
BRCA1-209ENST00000470026 KDM6BO15054 1643 aa19.29■□□□□ 0.68
BRCA1-209ENST00000470026 ANP32CO43423 234 aa19.29■□□□□ 0.68
BRCA1-209ENST00000470026 IFT140Q96RY7 1462 aa19.28■□□□□ 0.68
BRCA1-209ENST00000470026 KIAA0586Q9BVV6 1533 aa19.26■□□□□ 0.67
BRCA1-209ENST00000470026 KIAA0556O60303 1618 aa19.25■□□□□ 0.67
BRCA1-209ENST00000470026 ROCK1Q13464 1354 aa19.25■□□□□ 0.67
BRCA1-209ENST00000470026 RRP7BPQ9NSQ0 103 aa19.25■□□□□ 0.67
BRCA1-209ENST00000470026 DISP1Q96F81 1524 aa19.25■□□□□ 0.67
BRCA1-209ENST00000470026 DNMT1P26358 1616 aaKnown RBP19.22■□□□□ 0.67
BRCA1-209ENST00000470026 ZNF608Q9ULD9 1512 aaPredicted RBP19.21■□□□□ 0.67
BRCA1-209ENST00000470026 DAPK1P53355 1430 aa19.2■□□□□ 0.66
BRCA1-209ENST00000470026 CHIC2Q9UKJ5 165 aa19.2■□□□□ 0.66
BRCA1-209ENST00000470026 NUP153P49790 1475 aaKnown RBP19.2■□□□□ 0.66
BRCA1-209ENST00000470026 MPHOSPH9Q99550 1183 aa19.19■□□□□ 0.66
BRCA1-209ENST00000470026 RAPGEF6Q8TEU7 1601 aa19.18■□□□□ 0.66
BRCA1-209ENST00000470026 TSHZ2Q9NRE2 1034 aa19.18■□□□□ 0.66
BRCA1-209ENST00000470026 ABCC5O15440 1437 aa19.17■□□□□ 0.66
BRCA1-209ENST00000470026 GRIN2AQ12879 1464 aa19.16■□□□□ 0.66
BRCA1-209ENST00000470026 ANKRD30BQ9BXX2 1392 aa19.14■□□□□ 0.66
BRCA1-209ENST00000470026 TRIM52Q96A61 297 aa19.14■□□□□ 0.65
BRCA1-209ENST00000470026 WASHC2AQ641Q2 1341 aa19.14■□□□□ 0.65
BRCA1-209ENST00000470026 RPRD2Q5VT52 1461 aaKnown RBP19.14■□□□□ 0.65
BRCA1-209ENST00000470026 HSPA5P11021 654 aaKnown RBP19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms