RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 NISCHQ9Y2I1 1504 aa28.52■■■□□ 2.16
BRCA1-209ENST00000470026 CCDC180Q9P1Z9 1646 aa24.34■■□□□ 1.49
BRCA1-209ENST00000470026 ZCCHC6Q5VYS8 1495 aaKnown RBP24.17■■□□□ 1.46
BRCA1-209ENST00000470026 SHROOM4Q9ULL8 1493 aa24■■□□□ 1.43
BRCA1-209ENST00000470026 DCAF1Q9Y4B6 1507 aa23.56■■□□□ 1.36
BRCA1-209ENST00000470026 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
BRCA1-209ENST00000470026 DCAF8L2P0C7V8 631 aa23.2■■□□□ 1.3
BRCA1-209ENST00000470026 CHIC1Q5VXU3 224 aa23.11■■□□□ 1.29
BRCA1-209ENST00000470026 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
BRCA1-209ENST00000470026 ABCC9O60706 1549 aa22.8■■□□□ 1.24
BRCA1-209ENST00000470026 SCRIBQ14160 1630 aa22.59■■□□□ 1.21
BRCA1-209ENST00000470026 RSF1Q96T23 1441 aaPredicted RBP22.54■■□□□ 1.2
BRCA1-209ENST00000470026 HRCP23327 699 aa22.46■■□□□ 1.19
BRCA1-209ENST00000470026 NACADO15069 1562 aa22.45■■□□□ 1.18
BRCA1-209ENST00000470026 RB1CC1Q8TDY2 1594 aa22.36■■□□□ 1.17
BRCA1-209ENST00000470026 LOC105371045A0A1W2PR82 267 aa22.29■■□□□ 1.16
BRCA1-209ENST00000470026 PCGF6Q9BYE7 350 aa22.27■■□□□ 1.16
BRCA1-209ENST00000470026 CECR2Q9BXF3 1484 aa22.15■■□□□ 1.14
BRCA1-209ENST00000470026 MROH2BQ7Z745 1585 aa22.11■■□□□ 1.13
BRCA1-209ENST00000470026 TRIM41Q8WV44 630 aa22.04■■□□□ 1.12
BRCA1-209ENST00000470026 TRIM26Q12899 539 aaPredicted RBP22■■□□□ 1.11
BRCA1-209ENST00000470026 WIZO95785 1651 aa21.98■■□□□ 1.11
BRCA1-209ENST00000470026 BAZ1AQ9NRL2 1556 aaPredicted RBP21.95■■□□□ 1.11
BRCA1-209ENST00000470026 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
BRCA1-209ENST00000470026 PPARGC1BQ86YN6 1023 aaKnown RBP21.82■■□□□ 1.08
BRCA1-209ENST00000470026 TOP2AP11388 1531 aaKnown RBP21.73■■□□□ 1.07
BRCA1-209ENST00000470026 SMARCA4P51532 1647 aa21.71■■□□□ 1.07
BRCA1-209ENST00000470026 FAM9AQ8IZU1 332 aaPredicted RBP21.71■■□□□ 1.07
BRCA1-209ENST00000470026 UNC13AQ9UPW8 1703 aa21.7■■□□□ 1.06
BRCA1-209ENST00000470026 SMARCA2P51531 1590 aa21.59■■□□□ 1.05
BRCA1-209ENST00000470026 ZEB1P37275 1124 aaPredicted RBP21.59■■□□□ 1.05
BRCA1-209ENST00000470026 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
BRCA1-209ENST00000470026 ABCC8Q09428 1581 aa21.44■■□□□ 1.02
BRCA1-209ENST00000470026 BICRAQ9NZM4 1560 aa21.44■■□□□ 1.02
BRCA1-209ENST00000470026 PEG3Q9GZU2 1588 aa21.41■■□□□ 1.02
BRCA1-209ENST00000470026 EHMT2Q96KQ7 1210 aa21.37■■□□□ 1.01
BRCA1-209ENST00000470026 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1.01
BRCA1-209ENST00000470026 EEA1Q15075 1411 aa21.33■■□□□ 1
BRCA1-209ENST00000470026 SOGA1O94964 1423 aa21.25■□□□□ 0.99
BRCA1-209ENST00000470026 TNIKQ9UKE5 1360 aa21.25■□□□□ 0.99
BRCA1-209ENST00000470026 CEP162Q5TB80 1403 aa21.22■□□□□ 0.99
BRCA1-209ENST00000470026 PABPN1Q86U42 306 aaKnown RBP eCLIP21.16■□□□□ 0.98
BRCA1-209ENST00000470026 CSRNP3Q8WYN3 585 aa21.15■□□□□ 0.98
BRCA1-209ENST00000470026 RUSC2Q8N2Y8 1516 aa21.15■□□□□ 0.98
BRCA1-209ENST00000470026 ATAD2BQ9ULI0 1458 aa21.12■□□□□ 0.97
BRCA1-209ENST00000470026 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
BRCA1-209ENST00000470026 SYNJ1O43426 1573 aa21.06■□□□□ 0.96
BRCA1-209ENST00000470026 KIF21BO75037 1637 aa21.04■□□□□ 0.96
BRCA1-209ENST00000470026 BAZ1BQ9UIG0 1483 aaKnown RBP21.02■□□□□ 0.95
BRCA1-209ENST00000470026 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
BRCA1-209ENST00000470026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.97■□□□□ 0.95
BRCA1-209ENST00000470026 UBTFP17480 764 aaKnown RBP20.93■□□□□ 0.94
BRCA1-209ENST00000470026 CCER1Q8TC90 406 aaPredicted RBP20.93■□□□□ 0.94
BRCA1-209ENST00000470026 TOP2BQ02880 1626 aa20.86■□□□□ 0.93
BRCA1-209ENST00000470026 BIVM-ERCC5R4GMW8 1640 aa20.83■□□□□ 0.92
BRCA1-209ENST00000470026 CLIP1P30622 1438 aa20.8■□□□□ 0.92
BRCA1-209ENST00000470026 HMGXB3Q12766 1538 aa20.79■□□□□ 0.92
BRCA1-209ENST00000470026 VPS8Q8N3P4 1428 aa20.78■□□□□ 0.92
BRCA1-209ENST00000470026 RAPGEF2Q9Y4G8 1499 aa20.77■□□□□ 0.91
BRCA1-209ENST00000470026 NCAPD3P42695 1498 aa20.76■□□□□ 0.91
BRCA1-209ENST00000470026 TTBK1Q5TCY1 1321 aaPredicted RBP20.73■□□□□ 0.91
BRCA1-209ENST00000470026 ERICH3Q5RHP9 1530 aa20.7■□□□□ 0.9
BRCA1-209ENST00000470026 PRXQ9BXM0 1461 aa20.67■□□□□ 0.9
BRCA1-209ENST00000470026 SCAF1Q9H7N4 1312 aaKnown RBP20.65■□□□□ 0.9
BRCA1-209ENST00000470026 CUX1P39880 1505 aa20.6■□□□□ 0.89
BRCA1-209ENST00000470026 DIEXFQ68CQ4 756 aaKnown RBP20.59■□□□□ 0.89
BRCA1-209ENST00000470026 CFTRP13569 1480 aa20.58■□□□□ 0.89
BRCA1-209ENST00000470026 ARAP1Q96P48 1450 aa20.52■□□□□ 0.88
BRCA1-209ENST00000470026 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
BRCA1-209ENST00000470026 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
BRCA1-209ENST00000470026 APLP2Q06481 763 aa20.5■□□□□ 0.87
BRCA1-209ENST00000470026 ACIN1Q9UKV3 1341 aaKnown RBP20.49■□□□□ 0.87
BRCA1-209ENST00000470026 ZNF316A6NFI3 1004 aaPredicted RBP20.49■□□□□ 0.87
BRCA1-209ENST00000470026 HNRNPUL2Q1KMD3 747 aaKnown RBP20.46■□□□□ 0.87
BRCA1-209ENST00000470026 NEUROD1Q13562 356 aa20.41■□□□□ 0.86
BRCA1-209ENST00000470026 PELP1Q8IZL8 1130 aaKnown RBP20.36■□□□□ 0.85
BRCA1-209ENST00000470026 CLSPNQ9HAW4 1339 aa20.36■□□□□ 0.85
BRCA1-209ENST00000470026 RRBP1Q9P2E9 1410 aaKnown RBP20.35■□□□□ 0.85
BRCA1-209ENST00000470026 CENPBP07199 599 aaPredicted RBP20.35■□□□□ 0.85
BRCA1-209ENST00000470026 ARHGAP35Q9NRY4 1499 aa20.34■□□□□ 0.85
BRCA1-209ENST00000470026 RANGAP1P46060 587 aaPredicted RBP20.32■□□□□ 0.84
BRCA1-209ENST00000470026 KANK4Q5T7N3 995 aaPredicted RBP20.29■□□□□ 0.84
BRCA1-209ENST00000470026 CUX2O14529 1486 aa20.29■□□□□ 0.84
BRCA1-209ENST00000470026 CADPSQ9ULU8 1353 aa20.29■□□□□ 0.84
BRCA1-209ENST00000470026 DHX57Q6P158 1386 aaKnown RBP20.27■□□□□ 0.84
BRCA1-209ENST00000470026 IGF1RP08069 1367 aa20.27■□□□□ 0.84
BRCA1-209ENST00000470026 MAP3K1Q13233 1512 aa20.24■□□□□ 0.83
BRCA1-209ENST00000470026 FGD5Q6ZNL6 1462 aa20.2■□□□□ 0.82
BRCA1-209ENST00000470026 CCNB3Q8WWL7 1395 aa20.17■□□□□ 0.82
BRCA1-209ENST00000470026 GTF3C3Q9Y5Q9 886 aa20.17■□□□□ 0.82
BRCA1-209ENST00000470026 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
BRCA1-209ENST00000470026 TIAM1Q13009 1591 aa20.15■□□□□ 0.82
BRCA1-209ENST00000470026 MIER1Q8N108 512 aa20.14■□□□□ 0.81
BRCA1-209ENST00000470026 CC2D2AQ9P2K1 1620 aa20.12■□□□□ 0.81
BRCA1-209ENST00000470026 FANCD2Q9BXW9 1451 aa20.07■□□□□ 0.8
BRCA1-209ENST00000470026 DNMBPQ6XZF7 1577 aa20.06■□□□□ 0.8
BRCA1-209ENST00000470026 LRRC9Q6ZRR7 1453 aa20.05■□□□□ 0.8
BRCA1-209ENST00000470026 CFAP43Q8NDM7 1665 aa20.04■□□□□ 0.8
BRCA1-209ENST00000470026 ABCA10Q8WWZ4 1543 aa20.04■□□□□ 0.8
BRCA1-209ENST00000470026 FHAD1B1AJZ9 1412 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms