RNA–Protein interactions for RNA: ENST00000455546.6

GTF3C3-208, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 4

Gene GTF3C3, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-208ENST00000455546 SPDYE4A6NLX3 237 aa8.53□□□□□ -1.04
GTF3C3-208ENST00000455546 AQRO60306 1485 aaKnown RBP eCLIP8.52□□□□□ -1.051e-6■■■■□ 26.1
GTF3C3-208ENST00000455546 SUPT5HO00267 1087 aaKnown RBP8.52□□□□□ -1.05
GTF3C3-208ENST00000455546 ABCC8Q09428 1581 aa8.51□□□□□ -1.05
GTF3C3-208ENST00000455546 DNMBPQ6XZF7 1577 aa8.5□□□□□ -1.05
GTF3C3-208ENST00000455546 DSG3P32926 999 aa8.49□□□□□ -1.05
GTF3C3-208ENST00000455546 RTN4Q9NQC3 1192 aaKnown RBP8.49□□□□□ -1.05
GTF3C3-208ENST00000455546 RAD54L2Q9Y4B4 1467 aa8.49□□□□□ -1.05
GTF3C3-208ENST00000455546 EIF4G3O43432 1585 aaKnown RBP8.48□□□□□ -1.05
GTF3C3-208ENST00000455546 TDRD9Q8NDG6 1382 aaKnown RBP8.48□□□□□ -1.05
GTF3C3-208ENST00000455546 TARBP1Q13395 1621 aaKnown RBP8.47□□□□□ -1.05
GTF3C3-208ENST00000455546 POLA1P09884 1462 aaPredicted RBP8.47□□□□□ -1.05
GTF3C3-208ENST00000455546 RIMBP3CA6NJZ7 1639 aa8.47□□□□□ -1.05
GTF3C3-208ENST00000455546 RIMBP3BA6NNM3 1639 aa8.47□□□□□ -1.05
GTF3C3-208ENST00000455546 RIMBP3Q9UFD9 1639 aa8.47□□□□□ -1.05
GTF3C3-208ENST00000455546 SOGA1O94964 1423 aa8.46□□□□□ -1.05
GTF3C3-208ENST00000455546 CYB5RLQ6IPT4 315 aa8.46□□□□□ -1.06
GTF3C3-208ENST00000455546 CHD1O14646 1710 aa8.46□□□□□ -1.06
GTF3C3-208ENST00000455546 CACNB1Q02641 598 aaPredicted RBP8.43□□□□□ -1.06
GTF3C3-208ENST00000455546 ZBTB12Q9Y330 459 aaPredicted RBP8.43□□□□□ -1.06
GTF3C3-208ENST00000455546 FGD5Q6ZNL6 1462 aa8.43□□□□□ -1.06
GTF3C3-208ENST00000455546 ARHGEF11O15085 1522 aa8.43□□□□□ -1.06
GTF3C3-208ENST00000455546 CUX1P39880 1505 aa8.43□□□□□ -1.06
GTF3C3-208ENST00000455546 AMER1Q5JTC6 1135 aaPredicted RBP8.41□□□□□ -1.06
GTF3C3-208ENST00000455546 CHMP7Q8WUX9 453 aaPredicted RBP8.4□□□□□ -1.06
GTF3C3-208ENST00000455546 SNAPC4Q5SXM2 1469 aa8.38□□□□□ -1.07
GTF3C3-208ENST00000455546 ARAP1Q96P48 1450 aa8.35□□□□□ -1.07
GTF3C3-208ENST00000455546 PROM2Q8N271 834 aa8.35□□□□□ -1.07
GTF3C3-208ENST00000455546 GRIN2BQ13224 1484 aa8.34□□□□□ -1.07
GTF3C3-208ENST00000455546 GAPVD1Q14C86 1478 aa8.34□□□□□ -1.07
GTF3C3-208ENST00000455546 WDR97A6NE52 1622 aa8.33□□□□□ -1.08
GTF3C3-208ENST00000455546 FBXO3Q9UK99 471 aa8.33□□□□□ -1.08
GTF3C3-208ENST00000455546 PBRM1Q86U86 1689 aa8.33□□□□□ -1.08
GTF3C3-208ENST00000455546 MAGI1Q96QZ7 1491 aaPredicted RBP8.32□□□□□ -1.08
GTF3C3-208ENST00000455546 SYNJ2O15056 1496 aa8.32□□□□□ -1.08
GTF3C3-208ENST00000455546 CLASP1Q7Z460 1538 aa8.31□□□□□ -1.08
GTF3C3-208ENST00000455546 ZNF692Q9BU19 519 aaPredicted RBP8.31□□□□□ -1.08
GTF3C3-208ENST00000455546 ABCA10Q8WWZ4 1543 aa8.3□□□□□ -1.08
GTF3C3-208ENST00000455546 SYNJ1O43426 1573 aa8.3□□□□□ -1.08
GTF3C3-208ENST00000455546 WRNQ14191 1432 aaPredicted RBP eCLIP8.29□□□□□ -1.08
GTF3C3-208ENST00000455546 ABCA5Q8WWZ7 1642 aa8.29□□□□□ -1.08
GTF3C3-208ENST00000455546 VASPP50552 380 aaPredicted RBP8.28□□□□□ -1.08
GTF3C3-208ENST00000455546 TOP2BQ02880 1626 aa8.27□□□□□ -1.09
GTF3C3-208ENST00000455546 BIVM-ERCC5R4GMW8 1640 aa8.26□□□□□ -1.09
GTF3C3-208ENST00000455546 SPDYE2BA6NHP3 402 aa8.25□□□□□ -1.09
GTF3C3-208ENST00000455546 SPDYE6P0CI01 402 aa8.25□□□□□ -1.09
GTF3C3-208ENST00000455546 SPDYE2Q495Y8 402 aa8.25□□□□□ -1.09
GTF3C3-208ENST00000455546 ERCC6L2Q5T890 1561 aa8.25□□□□□ -1.09
GTF3C3-208ENST00000455546 GRIN2AQ12879 1464 aa8.24□□□□□ -1.09
GTF3C3-208ENST00000455546 SSUH2Q9Y2M2 353 aa8.23□□□□□ -1.09
GTF3C3-208ENST00000455546 CEP170Q5SW79 1584 aa8.22□□□□□ -1.09
GTF3C3-208ENST00000455546 ADAMTS12P58397 1594 aa8.22□□□□□ -1.09
GTF3C3-208ENST00000455546 FHAD1B1AJZ9 1412 aa8.21□□□□□ -1.09
GTF3C3-208ENST00000455546 NUP160Q12769 1436 aa8.2□□□□□ -1.1
GTF3C3-208ENST00000455546 IFNLR1Q8IU57 520 aaPredicted RBP8.2□□□□□ -1.1
GTF3C3-208ENST00000455546 JPH4Q96JJ6 628 aa8.2□□□□□ -1.1
GTF3C3-208ENST00000455546 ERICH3Q5RHP9 1530 aa8.19□□□□□ -1.1
GTF3C3-208ENST00000455546 PRG4Q92954 1404 aaPredicted RBP8.17□□□□□ -1.1
GTF3C3-208ENST00000455546 IGF1RP08069 1367 aa8.16□□□□□ -1.1
GTF3C3-208ENST00000455546 SHROOM2Q13796 1616 aa8.16□□□□□ -1.1
GTF3C3-208ENST00000455546 TTBK1Q5TCY1 1321 aaPredicted RBP8.14□□□□□ -1.11
GTF3C3-208ENST00000455546 KIF27Q86VH2 1401 aa8.12□□□□□ -1.11
GTF3C3-208ENST00000455546 KLHL34Q8N239 644 aa8.11□□□□□ -1.11
GTF3C3-208ENST00000455546 RUSC2Q8N2Y8 1516 aa8.1□□□□□ -1.11
GTF3C3-208ENST00000455546 NPM1P06748 294 aaKnown RBP eCLIP8.1□□□□□ -1.11
GTF3C3-208ENST00000455546 FAM69CQ0P6D2 419 aa8.1□□□□□ -1.11
GTF3C3-208ENST00000455546 KIF13AQ9H1H9 1805 aa8.1□□□□□ -1.11
GTF3C3-208ENST00000455546 CARMIL1Q5VZK9 1371 aa8.1□□□□□ -1.11
GTF3C3-208ENST00000455546 PLCD3Q8N3E9 789 aa8.09□□□□□ -1.11
GTF3C3-208ENST00000455546 KIAA0586Q9BVV6 1533 aa8.08□□□□□ -1.12
GTF3C3-208ENST00000455546 STAG3Q9UJ98 1225 aa8.08□□□□□ -1.12
GTF3C3-208ENST00000455546 MIER1Q8N108 512 aa8.07□□□□□ -1.12
GTF3C3-208ENST00000455546 CUL7Q14999 1698 aa8.07□□□□□ -1.12
GTF3C3-208ENST00000455546 TSPOAP1O95153 1857 aa8.06□□□□□ -1.12
GTF3C3-208ENST00000455546 ADCY10Q96PN6 1610 aa8.05□□□□□ -1.12
GTF3C3-208ENST00000455546 SLC24A1O60721 1099 aa8.05□□□□□ -1.12
GTF3C3-208ENST00000455546 PTPRGP23470 1445 aa8.04□□□□□ -1.12
GTF3C3-208ENST00000455546 ABCC10Q5T3U5 1492 aa8.03□□□□□ -1.12
GTF3C3-208ENST00000455546 SPOCK2Q92563 424 aa8.03□□□□□ -1.12
GTF3C3-208ENST00000455546 RBM42Q9BTD8 480 aaKnown RBP8.03□□□□□ -1.12
GTF3C3-208ENST00000455546 PKD2Q13563 968 aa8.02□□□□□ -1.13
GTF3C3-208ENST00000455546 TNIKQ9UKE5 1360 aa8.01□□□□□ -1.13
GTF3C3-208ENST00000455546 CLEC11AQ9Y240 323 aa8.01□□□□□ -1.13
GTF3C3-208ENST00000455546 CARMIL2Q6F5E8 1435 aa8.01□□□□□ -1.13
GTF3C3-208ENST00000455546 MAPKBP1O60336 1514 aa8□□□□□ -1.13
GTF3C3-208ENST00000455546 IQGAP2Q13576 1575 aa8□□□□□ -1.13
GTF3C3-208ENST00000455546 RAPGEF2Q9Y4G8 1499 aa8□□□□□ -1.13
GTF3C3-208ENST00000455546 AKT1S1Q96B36 256 aa7.99□□□□□ -1.13
GTF3C3-208ENST00000455546 DIP2BQ9P265 1576 aa7.99□□□□□ -1.13
GTF3C3-208ENST00000455546 DISP1Q96F81 1524 aa7.98□□□□□ -1.13
GTF3C3-208ENST00000455546 ASXL2Q76L83 1435 aa7.96□□□□□ -1.13
GTF3C3-208ENST00000455546 UACAQ9BZF9 1416 aa7.96□□□□□ -1.13
GTF3C3-208ENST00000455546 REM2Q8IYK8 340 aaPredicted RBP7.96□□□□□ -1.14
GTF3C3-208ENST00000455546 SPDYE1Q8NFV5 336 aaPredicted RBP7.96□□□□□ -1.14
GTF3C3-208ENST00000455546 ABCC2Q92887 1545 aa7.96□□□□□ -1.14
GTF3C3-208ENST00000455546 PLEKHG5O94827 1062 aa7.95□□□□□ -1.14
GTF3C3-208ENST00000455546 P3H3Q8IVL6 736 aa7.95□□□□□ -1.14
GTF3C3-208ENST00000455546 UGGT2Q9NYU1 1516 aa7.94□□□□□ -1.14
GTF3C3-208ENST00000455546 KDM6BO15054 1643 aa7.94□□□□□ -1.14
GTF3C3-208ENST00000455546 KDM4FA0A1W2PPD8 638 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms