RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 RIMBP3Q9UFD9 1639 aa13.7□□□□□ -0.22
CD44-211ENST00000442151 SP7Q8TDD2 431 aaPredicted RBP13.69□□□□□ -0.22
CD44-211ENST00000442151 ARHGEF11O15085 1522 aa13.69□□□□□ -0.22
CD44-211ENST00000442151 CYB5RLQ6IPT4 315 aa13.68□□□□□ -0.22
CD44-211ENST00000442151 CHD1O14646 1710 aa13.67□□□□□ -0.22
CD44-211ENST00000442151 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
CD44-211ENST00000442151 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
CD44-211ENST00000442151 WRNQ14191 1432 aaPredicted RBP eCLIP13.66□□□□□ -0.22
CD44-211ENST00000442151 SYNJ2O15056 1496 aa13.65□□□□□ -0.22
CD44-211ENST00000442151 SYNJ1O43426 1573 aa13.65□□□□□ -0.22
CD44-211ENST00000442151 RBM42Q9BTD8 480 aaKnown RBP13.64□□□□□ -0.23
CD44-211ENST00000442151 ABCA10Q8WWZ4 1543 aa13.64□□□□□ -0.23
CD44-211ENST00000442151 CHRDL2Q6WN34 429 aa13.64□□□□□ -0.23
CD44-211ENST00000442151 APLP2Q06481 763 aa13.57□□□□□ -0.24
CD44-211ENST00000442151 TOP2BQ02880 1626 aa13.56□□□□□ -0.24
CD44-211ENST00000442151 PBRM1Q86U86 1689 aa13.56□□□□□ -0.24
CD44-211ENST00000442151 ZNF219Q9P2Y4 722 aaPredicted RBP13.55□□□□□ -0.24
CD44-211ENST00000442151 CLASP1Q7Z460 1538 aa13.55□□□□□ -0.24
CD44-211ENST00000442151 BIVM-ERCC5R4GMW8 1640 aa13.55□□□□□ -0.24
CD44-211ENST00000442151 TRHP20396 242 aaPredicted RBP13.55□□□□□ -0.24
CD44-211ENST00000442151 ABCA5Q8WWZ7 1642 aa13.54□□□□□ -0.24
CD44-211ENST00000442151 ARAP1Q96P48 1450 aa13.54□□□□□ -0.24
CD44-211ENST00000442151 FHAD1B1AJZ9 1412 aa13.52□□□□□ -0.25
CD44-211ENST00000442151 ABCB7O75027 752 aa13.52□□□□□ -0.25
CD44-211ENST00000442151 ERICH3Q5RHP9 1530 aa13.5□□□□□ -0.25
CD44-211ENST00000442151 GRIN2AQ12879 1464 aa13.49□□□□□ -0.25
CD44-211ENST00000442151 NPM3O75607 178 aaKnown RBP13.45□□□□□ -0.26
CD44-211ENST00000442151 NUP160Q12769 1436 aa13.45□□□□□ -0.26
CD44-211ENST00000442151 ADAMTS12P58397 1594 aa13.44□□□□□ -0.26
CD44-211ENST00000442151 KIF27Q86VH2 1401 aa13.4□□□□□ -0.26
CD44-211ENST00000442151 JPH4Q96JJ6 628 aa13.4□□□□□ -0.26
CD44-211ENST00000442151 NPM1P06748 294 aaKnown RBP eCLIP13.36□□□□□ -0.27
CD44-211ENST00000442151 CEP170Q5SW79 1584 aa13.36□□□□□ -0.27
CD44-211ENST00000442151 IGF1RP08069 1367 aa13.34□□□□□ -0.27
CD44-211ENST00000442151 PRG4Q92954 1404 aaPredicted RBP13.33□□□□□ -0.28
CD44-211ENST00000442151 SHROOM2Q13796 1616 aa13.33□□□□□ -0.28
CD44-211ENST00000442151 CUL7Q14999 1698 aa13.31□□□□□ -0.28
CD44-211ENST00000442151 KIAA0586Q9BVV6 1533 aa13.29□□□□□ -0.28
CD44-211ENST00000442151 CARMIL1Q5VZK9 1371 aa13.29□□□□□ -0.28
CD44-211ENST00000442151 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.27□□□□□ -0.28
CD44-211ENST00000442151 HNRNPUL2Q1KMD3 747 aaKnown RBP13.27□□□□□ -0.28
CD44-211ENST00000442151 ERCC6L2Q5T890 1561 aa13.26□□□□□ -0.29
CD44-211ENST00000442151 CARMIL2Q6F5E8 1435 aa13.24□□□□□ -0.29
CD44-211ENST00000442151 RUSC2Q8N2Y8 1516 aa13.24□□□□□ -0.29
CD44-211ENST00000442151 FAM9AQ8IZU1 332 aaPredicted RBP13.21□□□□□ -0.29
CD44-211ENST00000442151 PTPRGP23470 1445 aa13.19□□□□□ -0.3
CD44-211ENST00000442151 TNIKQ9UKE5 1360 aa13.17□□□□□ -0.3
CD44-211ENST00000442151 FAM69CQ0P6D2 419 aa13.17□□□□□ -0.3
CD44-211ENST00000442151 RAPGEF2Q9Y4G8 1499 aa13.16□□□□□ -0.3
CD44-211ENST00000442151 MAPKBP1O60336 1514 aa13.14□□□□□ -0.31
CD44-211ENST00000442151 IQGAP2Q13576 1575 aa13.13□□□□□ -0.31
CD44-211ENST00000442151 ABCC10Q5T3U5 1492 aa13.12□□□□□ -0.31
CD44-211ENST00000442151 HAX1O00165 279 aa13.12□□□□□ -0.31
CD44-211ENST00000442151 SAMD1Q6SPF0 538 aaPredicted RBP13.11□□□□□ -0.31
CD44-211ENST00000442151 TTBK1Q5TCY1 1321 aaPredicted RBP13.1□□□□□ -0.31
CD44-211ENST00000442151 ADCY10Q96PN6 1610 aa13.08□□□□□ -0.32
CD44-211ENST00000442151 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
CD44-211ENST00000442151 PIP4P2Q8N4L2 257 aa13.08□□□□□ -0.32
CD44-211ENST00000442151 AKT1S1Q96B36 256 aa13.08□□□□□ -0.32
CD44-211ENST00000442151 UACAQ9BZF9 1416 aa13.07□□□□□ -0.32
CD44-211ENST00000442151 UHRF1BP1LA0JNW5 1464 aa13.07□□□□□ -0.32
CD44-211ENST00000442151 GOLGA3Q08378 1498 aa13.06□□□□□ -0.32
CD44-211ENST00000442151 PLB1Q6P1J6 1458 aa13.06□□□□□ -0.32
CD44-211ENST00000442151 UGGT2Q9NYU1 1516 aa13.06□□□□□ -0.32
CD44-211ENST00000442151 KIF13AQ9H1H9 1805 aa13.06□□□□□ -0.32
CD44-211ENST00000442151 ABCC2Q92887 1545 aa13.05□□□□□ -0.32
CD44-211ENST00000442151 DIP2BQ9P265 1576 aa13.02□□□□□ -0.32
CD44-211ENST00000442151 CSRNP3Q8WYN3 585 aa13.02□□□□□ -0.33
CD44-211ENST00000442151 DISP1Q96F81 1524 aa13.01□□□□□ -0.33
CD44-211ENST00000442151 EEA1Q15075 1411 aa13□□□□□ -0.33
CD44-211ENST00000442151 ASXL2Q76L83 1435 aa13□□□□□ -0.33
CD44-211ENST00000442151 PRXQ9BXM0 1461 aa12.99□□□□□ -0.33
CD44-211ENST00000442151 GLI2P10070 1586 aa12.97□□□□□ -0.33
CD44-211ENST00000442151 KDM5BQ9UGL1 1544 aa12.97□□□□□ -0.33
CD44-211ENST00000442151 KIAA0556O60303 1618 aa12.97□□□□□ -0.33
CD44-211ENST00000442151 CTTNBP2Q8WZ74 1663 aa12.97□□□□□ -0.33
CD44-211ENST00000442151 KDM6BO15054 1643 aa12.95□□□□□ -0.34
CD44-211ENST00000442151 TEX14Q8IWB6 1497 aa12.94□□□□□ -0.34
CD44-211ENST00000442151 POLA2Q14181 598 aa12.92□□□□□ -0.34
CD44-211ENST00000442151 TSPOAP1O95153 1857 aa12.92□□□□□ -0.34
CD44-211ENST00000442151 EPRSP07814 1512 aaKnown RBP12.91□□□□□ -0.34
CD44-211ENST00000442151 ZCCHC11Q5TAX3 1644 aaKnown RBP12.89□□□□□ -0.35
CD44-211ENST00000442151 REM2Q8IYK8 340 aaPredicted RBP12.89□□□□□ -0.35
CD44-211ENST00000442151 WDR7Q9Y4E6 1490 aa12.89□□□□□ -0.35
CD44-211ENST00000442151 FXR2P51116 673 aaKnown RBP eCLIP12.88□□□□□ -0.35
CD44-211ENST00000442151 KCNH8Q96L42 1107 aa12.88□□□□□ -0.35
CD44-211ENST00000442151 ABCA8O94911 1581 aa12.86□□□□□ -0.35
CD44-211ENST00000442151 P3H3Q8IVL6 736 aa12.85□□□□□ -0.35
CD44-211ENST00000442151 CD109Q6YHK3 1445 aa12.85□□□□□ -0.35
CD44-211ENST00000442151 PHLDB1Q86UU1 1377 aa12.84□□□□□ -0.35
CD44-211ENST00000442151 MAP3K4Q9Y6R4 1608 aa12.83□□□□□ -0.36
CD44-211ENST00000442151 MAGI3Q5TCQ9 1506 aa12.82□□□□□ -0.36
CD44-211ENST00000442151 LHX8Q68G74 356 aa12.81□□□□□ -0.36
CD44-211ENST00000442151 CFAP43Q8NDM7 1665 aa12.8□□□□□ -0.36
CD44-211ENST00000442151 PLEKHD1A6NEE1 506 aa12.8□□□□□ -0.36
CD44-211ENST00000442151 PLSCR2Q9NRY7 297 aa12.79□□□□□ -0.36
CD44-211ENST00000442151 ATP10BO94823 1461 aa12.79□□□□□ -0.36
CD44-211ENST00000442151 UBTFP17480 764 aaKnown RBP12.78□□□□□ -0.36
CD44-211ENST00000442151 PPRC1Q5VV67 1664 aaKnown RBP12.78□□□□□ -0.36
CD44-211ENST00000442151 KDM4FA0A1W2PPD8 638 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms