RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 TONSLQ96HA7 1378 aa21.5■■□□□ 1.03
RIF1-204ENST00000430328 DDX10Q13206 875 aaKnown RBP21.45■■□□□ 1.02
RIF1-204ENST00000430328 A0A0G2JS52 829 aa21.45■■□□□ 1.02
RIF1-204ENST00000430328 NOC3LQ8WTT2 800 aaKnown RBP21.44■■□□□ 1.02
RIF1-204ENST00000430328 IRX6P78412 446 aaPredicted RBP21.43■■□□□ 1.02
RIF1-204ENST00000430328 DRC7Q8IY82 874 aa21.42■■□□□ 1.02
RIF1-204ENST00000430328 PNNQ9H307 717 aaKnown RBP21.41■■□□□ 1.02
RIF1-204ENST00000430328 CHGAP10645 457 aaKnown RBP21.4■■□□□ 1.02
RIF1-204ENST00000430328 KIAA2012Q0VF49 1180 aa21.4■■□□□ 1.02
RIF1-204ENST00000430328 MRS2Q9HD23 443 aa21.37■■□□□ 1.01
RIF1-204ENST00000430328 HSP90AB1P08238 724 aaKnown RBP21.37■■□□□ 1.01
RIF1-204ENST00000430328 SCAF1Q9H7N4 1312 aaKnown RBP21.36■■□□□ 1.01
RIF1-204ENST00000430328 GOLGA6L4A6NEF3 574 aa21.36■■□□□ 1.01
RIF1-204ENST00000430328 ARID4BQ4LE39 1312 aaPredicted RBP21.35■■□□□ 1.01
RIF1-204ENST00000430328 CLSTN1O94985 981 aa21.35■■□□□ 1.01
RIF1-204ENST00000430328 GOLGA6L1Q8N7Z2 621 aa21.34■■□□□ 1.01
RIF1-204ENST00000430328 LAS1LQ9Y4W2 734 aaKnown RBP21.34■■□□□ 1.01
RIF1-204ENST00000430328 FGD1P98174 961 aa21.33■■□□□ 1.01
RIF1-204ENST00000430328 TAOK2Q9UL54 1235 aa21.31■■□□□ 1
RIF1-204ENST00000430328 NOP58Q9Y2X3 529 aaKnown RBP21.3■■□□□ 1
RIF1-204ENST00000430328 PRM3Q9NNZ6 103 aa21.29■■□□□ 1
RIF1-204ENST00000430328 ZNF777Q9ULD5 760 aaPredicted RBP21.29■■□□□ 1
RIF1-204ENST00000430328 SETQ01105 290 aaPredicted RBP21.29■■□□□ 1
RIF1-204ENST00000430328 USP35Q9P2H5 1018 aa21.28■■□□□ 1
RIF1-204ENST00000430328 A0A0U1RQG5 324 aaPredicted RBP21.27■■□□□ 1
RIF1-204ENST00000430328 FTSJ3Q8IY81 847 aaKnown RBP21.27■■□□□ 1
RIF1-204ENST00000430328 FBLN2P98095 1184 aa21.23■□□□□ 0.99
RIF1-204ENST00000430328 NAP1L2Q9ULW6 460 aaPredicted RBP21.23■□□□□ 0.99
RIF1-204ENST00000430328 ARID3AQ99856 593 aa21.23■□□□□ 0.99
RIF1-204ENST00000430328 KCNJ4P48050 445 aa21.21■□□□□ 0.99
RIF1-204ENST00000430328 PLPPR3Q6T4P5 718 aa21.17■□□□□ 0.98
RIF1-204ENST00000430328 HSCBQ8IWL3 235 aa21.16■□□□□ 0.98
RIF1-204ENST00000430328 DEKP35659 375 aaKnown RBP21.15■□□□□ 0.98
RIF1-204ENST00000430328 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.11■□□□□ 0.97
RIF1-204ENST00000430328 ZBTB7CA1YPR0 619 aa21.1■□□□□ 0.97
RIF1-204ENST00000430328 CHMP4BQ9H444 224 aaKnown RBP21.1■□□□□ 0.97
RIF1-204ENST00000430328 PTMSP20962 102 aa21.1■□□□□ 0.97
RIF1-204ENST00000430328 GOLGA2Q08379 1002 aa21.09■□□□□ 0.97
RIF1-204ENST00000430328 ARID3CA6NKF2 412 aa21.09■□□□□ 0.97
RIF1-204ENST00000430328 GNL2Q13823 731 aaKnown RBP21.07■□□□□ 0.96
RIF1-204ENST00000430328 MCCP23508 829 aa21.06■□□□□ 0.96
RIF1-204ENST00000430328 OS9Q13438 667 aaPredicted RBP21.06■□□□□ 0.96
RIF1-204ENST00000430328 C14orf37Q86TY3 774 aa21.06■□□□□ 0.96
RIF1-204ENST00000430328 NPHP1O15259 732 aa21.06■□□□□ 0.96
RIF1-204ENST00000430328 RGS3P49796 1198 aa21.04■□□□□ 0.96
RIF1-204ENST00000430328 CFAP53Q96M91 514 aa21.02■□□□□ 0.96
RIF1-204ENST00000430328 TPM4P67936 248 aa21.02■□□□□ 0.96
RIF1-204ENST00000430328 P3H3Q8IVL6 736 aa21.02■□□□□ 0.96
RIF1-204ENST00000430328 KDM2AQ9Y2K7 1162 aa21■□□□□ 0.95
RIF1-204ENST00000430328 CFAP44Q96MT7 982 aa20.99■□□□□ 0.95
RIF1-204ENST00000430328 HSP90AA2PQ14568 343 aaPredicted RBP20.98■□□□□ 0.95
RIF1-204ENST00000430328 SUPT16HQ9Y5B9 1047 aaKnown RBP20.98■□□□□ 0.95
RIF1-204ENST00000430328 SYAP1Q96A49 352 aaPredicted RBP20.98■□□□□ 0.95
RIF1-204ENST00000430328 GBP4Q96PP9 640 aa20.97■□□□□ 0.95
RIF1-204ENST00000430328 PLEKHG5O94827 1062 aa20.96■□□□□ 0.95
RIF1-204ENST00000430328 MS4A1P11836 297 aa20.96■□□□□ 0.95
RIF1-204ENST00000430328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.95■□□□□ 0.957e-7■■■□□ 15.4
RIF1-204ENST00000430328 PPP4R2Q9NY27 417 aa20.95■□□□□ 0.94
RIF1-204ENST00000430328 MIER1Q8N108 512 aa20.94■□□□□ 0.94
RIF1-204ENST00000430328 HTATSF1O43719 755 aaKnown RBP20.93■□□□□ 0.94
RIF1-204ENST00000430328 CEP89Q96ST8 783 aa20.93■□□□□ 0.94
RIF1-204ENST00000430328 PDE4CQ08493 712 aa20.91■□□□□ 0.94
RIF1-204ENST00000430328 RRP12Q5JTH9 1297 aaKnown RBP20.91■□□□□ 0.94
RIF1-204ENST00000430328 EIF4G2P78344 907 aaKnown RBP eCLIP20.91■□□□□ 0.94
RIF1-204ENST00000430328 ISY1Q9ULR0 285 aaKnown RBP20.91■□□□□ 0.94
RIF1-204ENST00000430328 HAP1P54257 671 aaPredicted RBP20.91■□□□□ 0.94
RIF1-204ENST00000430328 CCDC34Q96HJ3 373 aa20.9■□□□□ 0.94
RIF1-204ENST00000430328 SPRYD3Q8NCJ5 442 aa20.9■□□□□ 0.94
RIF1-204ENST00000430328 PATL2C9JE40 543 aaKnown RBP20.88■□□□□ 0.93
RIF1-204ENST00000430328 MAPK8IP3Q9UPT6 1336 aa20.86■□□□□ 0.93
RIF1-204ENST00000430328 FRAT1Q92837 279 aaPredicted RBP20.86■□□□□ 0.93
RIF1-204ENST00000430328 TPM3P06753 285 aa20.85■□□□□ 0.93
RIF1-204ENST00000430328 GZF1Q9H116 711 aaPredicted RBP20.85■□□□□ 0.93
RIF1-204ENST00000430328 GPS2Q13227 327 aa20.84■□□□□ 0.93
RIF1-204ENST00000430328 KNSTRNQ9Y448 316 aa20.83■□□□□ 0.92
RIF1-204ENST00000430328 KIAA1211Q6ZU35 1233 aa20.82■□□□□ 0.92
RIF1-204ENST00000430328 ZNF771Q7L3S4 317 aaPredicted RBP20.8■□□□□ 0.92
RIF1-204ENST00000430328 APPP05067 770 aa20.8■□□□□ 0.92
RIF1-204ENST00000430328 VSIG10Q8N0Z9 540 aa20.79■□□□□ 0.92
RIF1-204ENST00000430328 CDCA8Q53HL2 280 aa20.79■□□□□ 0.92
RIF1-204ENST00000430328 GOLGA6L3A6NEY3 463 aa20.79■□□□□ 0.92
RIF1-204ENST00000430328 RSPH6AQ9H0K4 717 aa20.78■□□□□ 0.92
RIF1-204ENST00000430328 CSPP1Q1MSJ5 1256 aa20.77■□□□□ 0.92
RIF1-204ENST00000430328 PHF14O94880 888 aa20.77■□□□□ 0.92
RIF1-204ENST00000430328 CCDC70Q6NSX1 233 aa20.76■□□□□ 0.91
RIF1-204ENST00000430328 NUDCQ9Y266 331 aa20.76■□□□□ 0.91
RIF1-204ENST00000430328 NEUROD2Q15784 382 aa20.76■□□□□ 0.91
RIF1-204ENST00000430328 HIRIP3Q9BW71 556 aaPredicted RBP20.76■□□□□ 0.91
RIF1-204ENST00000430328 NPM1P06748 294 aaKnown RBP eCLIP20.75■□□□□ 0.91
RIF1-204ENST00000430328 PPP1R15AO75807 674 aaPredicted RBP20.73■□□□□ 0.91
RIF1-204ENST00000430328 TEX35Q5T0J7 233 aa20.72■□□□□ 0.91
RIF1-204ENST00000430328 CHIC2Q9UKJ5 165 aa20.71■□□□□ 0.91
RIF1-204ENST00000430328 FBXO3Q9UK99 471 aa20.71■□□□□ 0.91
RIF1-204ENST00000430328 B4GALNT3Q6L9W6 998 aa20.71■□□□□ 0.91
RIF1-204ENST00000430328 CREBRFQ8IUR6 639 aa20.71■□□□□ 0.91
RIF1-204ENST00000430328 TSR1Q2NL82 804 aaKnown RBP20.71■□□□□ 0.91
RIF1-204ENST00000430328 TSPY4P0CV99 314 aa20.7■□□□□ 0.9
RIF1-204ENST00000430328 TSPY10P0CW01 314 aa20.7■□□□□ 0.9
RIF1-204ENST00000430328 NOM1Q5C9Z4 860 aaKnown RBP20.7■□□□□ 0.9
RIF1-204ENST00000430328 TAF7LQ5H9L4 462 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms