RNA–Protein interactions for RNA: ENST00000428135.7

SNX13-203, Transcript of sorting nexin 13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX13, Length 6,357 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-203ENST00000428135 WRNQ14191 1432 aaPredicted RBP eCLIP13.24□□□□□ -0.29
SNX13-203ENST00000428135 PPP1R15AO75807 674 aaPredicted RBP13.23□□□□□ -0.29
SNX13-203ENST00000428135 EIF4G1Q04637 1599 aaKnown RBP13.22□□□□□ -0.29
SNX13-203ENST00000428135 BAZ1AQ9NRL2 1556 aaPredicted RBP13.21□□□□□ -0.3
SNX13-203ENST00000428135 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
SNX13-203ENST00000428135 FKBP8Q14318 412 aa13.19□□□□□ -0.3
SNX13-203ENST00000428135 TMC1Q8TDI8 760 aa13.18□□□□□ -0.3
SNX13-203ENST00000428135 MROH2BQ7Z745 1585 aa13.16□□□□□ -0.3
SNX13-203ENST00000428135 IRX6P78412 446 aaPredicted RBP13.16□□□□□ -0.3
SNX13-203ENST00000428135 CYB5RLQ6IPT4 315 aa13.15□□□□□ -0.3
SNX13-203ENST00000428135 WDR43Q15061 677 aaKnown RBP eCLIP13.14□□□□□ -0.31
SNX13-203ENST00000428135 HAP1P54257 671 aaPredicted RBP13.14□□□□□ -0.31
SNX13-203ENST00000428135 CUX2O14529 1486 aa13.14□□□□□ -0.31
SNX13-203ENST00000428135 KIF27Q86VH2 1401 aa13.13□□□□□ -0.31
SNX13-203ENST00000428135 PPM1GO15355 546 aaPredicted RBP13.13□□□□□ -0.31
SNX13-203ENST00000428135 PDS5BQ9NTI5 1447 aa13.13□□□□□ -0.31
SNX13-203ENST00000428135 ARXQ96QS3 562 aa13.13□□□□□ -0.31
SNX13-203ENST00000428135 LMOD2Q6P5Q4 547 aa13.12□□□□□ -0.31
SNX13-203ENST00000428135 CFDP1Q9UEE9 299 aaPredicted RBP13.12□□□□□ -0.31
SNX13-203ENST00000428135 CLIP1P30622 1438 aa13.11□□□□□ -0.31
SNX13-203ENST00000428135 HSP90AA1P07900 732 aaKnown RBP13.11□□□□□ -0.31
SNX13-203ENST00000428135 DCAF1Q9Y4B6 1507 aa13.11□□□□□ -0.31
SNX13-203ENST00000428135 MRS2Q9HD23 443 aa13.1□□□□□ -0.31
SNX13-203ENST00000428135 ANP32AP39687 249 aaKnown RBP13.08□□□□□ -0.31
SNX13-203ENST00000428135 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
SNX13-203ENST00000428135 ACIN1Q9UKV3 1341 aaKnown RBP13.08□□□□□ -0.32
SNX13-203ENST00000428135 CCDC88BA6NC98 1476 aa13.06□□□□□ -0.32
SNX13-203ENST00000428135 SOGA1O94964 1423 aa13.06□□□□□ -0.32
SNX13-203ENST00000428135 TNNT2P45379 298 aaPredicted RBP13.04□□□□□ -0.32
SNX13-203ENST00000428135 CARMIL1Q5VZK9 1371 aa13.04□□□□□ -0.32
SNX13-203ENST00000428135 ABCC8Q09428 1581 aa13.04□□□□□ -0.32
SNX13-203ENST00000428135 WIZO95785 1651 aa13.03□□□□□ -0.32
SNX13-203ENST00000428135 GGT6Q6P531 493 aa13.01□□□□□ -0.33
SNX13-203ENST00000428135 SOX12O15370 315 aa13□□□□□ -0.33
SNX13-203ENST00000428135 NEUROD2Q15784 382 aa13□□□□□ -0.33
SNX13-203ENST00000428135 CCDC136Q96JN2 1154 aa13□□□□□ -0.33
SNX13-203ENST00000428135 DNAJC5BQ9UF47 199 aa12.99□□□□□ -0.33
SNX13-203ENST00000428135 MYO15BQ96JP2 1530 aa12.99□□□□□ -0.33
SNX13-203ENST00000428135 EIF4G2P78344 907 aaKnown RBP eCLIP12.99□□□□□ -0.33
SNX13-203ENST00000428135 LAS1LQ9Y4W2 734 aaKnown RBP12.99□□□□□ -0.33
SNX13-203ENST00000428135 MIER1Q8N108 512 aa12.98□□□□□ -0.33
SNX13-203ENST00000428135 CADPSQ9ULU8 1353 aa12.98□□□□□ -0.33
SNX13-203ENST00000428135 GOLGA3Q08378 1498 aa12.97□□□□□ -0.33
SNX13-203ENST00000428135 SAFB2Q14151 953 aaKnown RBP eCLIP12.97□□□□□ -0.33
SNX13-203ENST00000428135 CEP162Q5TB80 1403 aa12.96□□□□□ -0.33
SNX13-203ENST00000428135 UPF2Q9HAU5 1272 aaKnown RBP12.96□□□□□ -0.33
SNX13-203ENST00000428135 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.95□□□□□ -0.34
SNX13-203ENST00000428135 OSCARQ8IYS5 282 aa12.95□□□□□ -0.34
SNX13-203ENST00000428135 SIN3AQ96ST3 1273 aa12.95□□□□□ -0.34
SNX13-203ENST00000428135 POGKQ9P215 609 aa12.95□□□□□ -0.34
SNX13-203ENST00000428135 ATAD2BQ9ULI0 1458 aa12.94□□□□□ -0.34
SNX13-203ENST00000428135 CEP164Q9UPV0 1460 aa12.94□□□□□ -0.34
SNX13-203ENST00000428135 CARD11Q9BXL7 1154 aa12.93□□□□□ -0.34
SNX13-203ENST00000428135 NBR1Q14596 966 aa12.92□□□□□ -0.34
SNX13-203ENST00000428135 TAOK2Q9UL54 1235 aa12.92□□□□□ -0.34
SNX13-203ENST00000428135 TPRNQ4KMQ1 711 aa12.91□□□□□ -0.34
SNX13-203ENST00000428135 AEBP2Q6ZN18 517 aaPredicted RBP12.91□□□□□ -0.34
SNX13-203ENST00000428135 CC2D1BQ5T0F9 858 aaKnown RBP12.9□□□□□ -0.34
SNX13-203ENST00000428135 MYH16Q9H6N6 1097 aa12.9□□□□□ -0.34
SNX13-203ENST00000428135 JPH4Q96JJ6 628 aa12.89□□□□□ -0.35
SNX13-203ENST00000428135 KNSTRNQ9Y448 316 aa12.89□□□□□ -0.35
SNX13-203ENST00000428135 CCNB3Q8WWL7 1395 aa12.89□□□□□ -0.35
SNX13-203ENST00000428135 FANCD2Q9BXW9 1451 aa12.87□□□□□ -0.35
SNX13-203ENST00000428135 TULP1O00294 542 aaPredicted RBP12.87□□□□□ -0.35
SNX13-203ENST00000428135 NPHP1O15259 732 aa12.87□□□□□ -0.35
SNX13-203ENST00000428135 STK26Q9P289 416 aa12.87□□□□□ -0.35
SNX13-203ENST00000428135 CARMIL2Q6F5E8 1435 aa12.86□□□□□ -0.35
SNX13-203ENST00000428135 FOXD1Q16676 465 aa12.85□□□□□ -0.35
SNX13-203ENST00000428135 U2SURPO15042 1029 aaKnown RBP12.85□□□□□ -0.35
SNX13-203ENST00000428135 NUTM2DQ5VT03 806 aaPredicted RBP12.85□□□□□ -0.35
SNX13-203ENST00000428135 DCAF11Q8TEB1 546 aa12.84□□□□□ -0.35
SNX13-203ENST00000428135 CFAP53Q96M91 514 aa12.83□□□□□ -0.36
SNX13-203ENST00000428135 ANP32BQ92688 251 aaKnown RBP12.83□□□□□ -0.36
SNX13-203ENST00000428135 SMARCA4P51532 1647 aa12.82□□□□□ -0.36
SNX13-203ENST00000428135 HNRNPMP52272 730 aaKnown RBP eCLIP12.81□□□□□ -0.368e-7■■■■■ 42.1
SNX13-203ENST00000428135 EEA1Q15075 1411 aa12.81□□□□□ -0.36
SNX13-203ENST00000428135 NESP48681 1621 aa12.8□□□□□ -0.36
SNX13-203ENST00000428135 SRPK2P78362 688 aaKnown RBP12.8□□□□□ -0.36
SNX13-203ENST00000428135 FRAT1Q92837 279 aaPredicted RBP12.8□□□□□ -0.36
SNX13-203ENST00000428135 FAM69CQ0P6D2 419 aa12.79□□□□□ -0.36
SNX13-203ENST00000428135 MAPK8IP3Q9UPT6 1336 aa12.79□□□□□ -0.36
SNX13-203ENST00000428135 TOP2AP11388 1531 aaKnown RBP12.79□□□□□ -0.36
SNX13-203ENST00000428135 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
SNX13-203ENST00000428135 FTSJ3Q8IY81 847 aaKnown RBP12.78□□□□□ -0.36
SNX13-203ENST00000428135 PAK3O75914 559 aaPredicted RBP12.77□□□□□ -0.37
SNX13-203ENST00000428135 AQRO60306 1485 aaKnown RBP eCLIP12.77□□□□□ -0.37
SNX13-203ENST00000428135 KIF3BO15066 747 aa12.76□□□□□ -0.37
SNX13-203ENST00000428135 EIF5BO60841 1220 aaKnown RBP12.76□□□□□ -0.37
SNX13-203ENST00000428135 KANK4Q5T7N3 995 aaPredicted RBP12.75□□□□□ -0.37
SNX13-203ENST00000428135 EFCAB2Q5VUJ9 269 aa12.75□□□□□ -0.37
SNX13-203ENST00000428135 SUPT16HQ9Y5B9 1047 aaKnown RBP12.75□□□□□ -0.37
SNX13-203ENST00000428135 TNIKQ9UKE5 1360 aa12.75□□□□□ -0.37
SNX13-203ENST00000428135 FHOD3Q2V2M9 1422 aa12.75□□□□□ -0.37
SNX13-203ENST00000428135 CDCA8Q53HL2 280 aa12.74□□□□□ -0.37
SNX13-203ENST00000428135 CC2D2AQ9P2K1 1620 aa12.73□□□□□ -0.37
SNX13-203ENST00000428135 NUTM2FA1L443 756 aa12.73□□□□□ -0.37
SNX13-203ENST00000428135 NUDCQ9Y266 331 aa12.71□□□□□ -0.37
SNX13-203ENST00000428135 ZNF330Q9Y3S2 320 aaPredicted RBP12.71□□□□□ -0.38
SNX13-203ENST00000428135 KANK1Q14678 1352 aa12.71□□□□□ -0.38
SNX13-203ENST00000428135 RGS3P49796 1198 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms