RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 POLA1P09884 1462 aaPredicted RBP5.8□□□□□ -1.48
RTN4-209ENST00000405240 LRRC9Q6ZRR7 1453 aa5.8□□□□□ -1.48
RTN4-209ENST00000405240 CARMIL1Q5VZK9 1371 aa5.8□□□□□ -1.48
RTN4-209ENST00000405240 MAPKBP1O60336 1514 aa5.79□□□□□ -1.48
RTN4-209ENST00000405240 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.79□□□□□ -1.48
RTN4-209ENST00000405240 FYCO1Q9BQS8 1478 aa5.79□□□□□ -1.48
RTN4-209ENST00000405240 CCNB3Q8WWL7 1395 aa5.78□□□□□ -1.48
RTN4-209ENST00000405240 THOC2Q8NI27 1593 aaKnown RBP5.77□□□□□ -1.48
RTN4-209ENST00000405240 TARBP1Q13395 1621 aaKnown RBP5.77□□□□□ -1.49
RTN4-209ENST00000405240 URB2Q14146 1524 aaKnown RBP5.77□□□□□ -1.49
RTN4-209ENST00000405240 FHAD1B1AJZ9 1412 aa5.77□□□□□ -1.49
RTN4-209ENST00000405240 TTBK1Q5TCY1 1321 aaPredicted RBP5.77□□□□□ -1.49
RTN4-209ENST00000405240 NEUROD1Q13562 356 aa5.77□□□□□ -1.49
RTN4-209ENST00000405240 SNAPC4Q5SXM2 1469 aa5.77□□□□□ -1.49
RTN4-209ENST00000405240 CASKIN1Q8WXD9 1431 aa5.77□□□□□ -1.49
RTN4-209ENST00000405240 APLP2Q06481 763 aa5.77□□□□□ -1.49
RTN4-209ENST00000405240 HNRNPUL2Q1KMD3 747 aaKnown RBP5.76□□□□□ -1.49
RTN4-209ENST00000405240 RAD54L2Q9Y4B4 1467 aa5.76□□□□□ -1.49
RTN4-209ENST00000405240 NESP48681 1621 aa5.75□□□□□ -1.49
RTN4-209ENST00000405240 PBRM1Q86U86 1689 aa5.75□□□□□ -1.49
RTN4-209ENST00000405240 ARHGEF11O15085 1522 aa5.75□□□□□ -1.49
RTN4-209ENST00000405240 PELP1Q8IZL8 1130 aaKnown RBP5.74□□□□□ -1.49
RTN4-209ENST00000405240 PHLDB1Q86UU1 1377 aa5.74□□□□□ -1.49
RTN4-209ENST00000405240 GRIN2BQ13224 1484 aa5.73□□□□□ -1.49
RTN4-209ENST00000405240 PHF23Q9BUL5 403 aaPredicted RBP5.72□□□□□ -1.49
RTN4-209ENST00000405240 SETD5Q9C0A6 1442 aa5.72□□□□□ -1.49
RTN4-209ENST00000405240 RAB3GAP2Q9H2M9 1393 aa5.72□□□□□ -1.49
RTN4-209ENST00000405240 CENPBP07199 599 aaPredicted RBP5.71□□□□□ -1.49
RTN4-209ENST00000405240 MIER1Q8N108 512 aa5.71□□□□□ -1.5
RTN4-209ENST00000405240 FMN1Q68DA7 1419 aa5.71□□□□□ -1.5
RTN4-209ENST00000405240 SUPT6HQ7KZ85 1726 aaKnown RBP5.71□□□□□ -1.5
RTN4-209ENST00000405240 GCC2Q8IWJ2 1684 aa5.7□□□□□ -1.5
RTN4-209ENST00000405240 ADAMTS12P58397 1594 aa5.7□□□□□ -1.5
RTN4-209ENST00000405240 GAPVD1Q14C86 1478 aa5.7□□□□□ -1.5
RTN4-209ENST00000405240 FHOD3Q2V2M9 1422 aa5.7□□□□□ -1.5
RTN4-209ENST00000405240 UGGT2Q9NYU1 1516 aa5.69□□□□□ -1.5
RTN4-209ENST00000405240 EHBP1L1Q8N3D4 1523 aa5.69□□□□□ -1.5
RTN4-209ENST00000405240 PTPN23Q9H3S7 1636 aa5.69□□□□□ -1.5
RTN4-209ENST00000405240 TCOF1Q13428 1488 aaKnown RBP5.69□□□□□ -1.5
RTN4-209ENST00000405240 PDS5BQ9NTI5 1447 aa5.69□□□□□ -1.5
RTN4-209ENST00000405240 MAGI3Q5TCQ9 1506 aa5.68□□□□□ -1.5
RTN4-209ENST00000405240 FGD6Q6ZV73 1430 aa5.68□□□□□ -1.5
RTN4-209ENST00000405240 KDM5BQ9UGL1 1544 aa5.68□□□□□ -1.5
RTN4-209ENST00000405240 RANGAP1P46060 587 aaPredicted RBP5.68□□□□□ -1.5
RTN4-209ENST00000405240 TIMELESSQ9UNS1 1208 aa5.68□□□□□ -1.5
RTN4-209ENST00000405240 GTF3C3Q9Y5Q9 886 aa5.67□□□□□ -1.5
RTN4-209ENST00000405240 HECW1Q76N89 1606 aa5.67□□□□□ -1.5
RTN4-209ENST00000405240 HFM1A2PYH4 1435 aa5.67□□□□□ -1.5
RTN4-209ENST00000405240 CCDC18Q5T9S5 1454 aa5.67□□□□□ -1.5
RTN4-209ENST00000405240 IQGAP2Q13576 1575 aa5.66□□□□□ -1.5
RTN4-209ENST00000405240 WDR62O43379 1518 aa5.66□□□□□ -1.5
RTN4-209ENST00000405240 PTPRKQ15262 1439 aa5.66□□□□□ -1.5
RTN4-209ENST00000405240 AKNAQ7Z591 1439 aa5.66□□□□□ -1.5
RTN4-209ENST00000405240 NCOA2Q15596 1464 aa5.66□□□□□ -1.5
RTN4-209ENST00000405240 MYOM3Q5VTT5 1437 aa5.65□□□□□ -1.5
RTN4-209ENST00000405240 MRC2Q9UBG0 1479 aa5.64□□□□□ -1.51
RTN4-209ENST00000405240 UACAQ9BZF9 1416 aa5.64□□□□□ -1.51
RTN4-209ENST00000405240 DENND4BO75064 1496 aaPredicted RBP5.64□□□□□ -1.51
RTN4-209ENST00000405240 NAIPQ13075 1403 aa5.64□□□□□ -1.51
RTN4-209ENST00000405240 ADCY10Q96PN6 1610 aa5.63□□□□□ -1.51
RTN4-209ENST00000405240 KIAA0556O60303 1618 aa5.63□□□□□ -1.51
RTN4-209ENST00000405240 POLR1AO95602 1720 aaPredicted RBP5.63□□□□□ -1.51
RTN4-209ENST00000405240 TDRD9Q8NDG6 1382 aaKnown RBP5.63□□□□□ -1.51
RTN4-209ENST00000405240 EPRSP07814 1512 aaKnown RBP5.62□□□□□ -1.51
RTN4-209ENST00000405240 MIA2Q96PC5 1412 aa5.62□□□□□ -1.51
RTN4-209ENST00000405240 IFT140Q96RY7 1462 aa5.61□□□□□ -1.51
RTN4-209ENST00000405240 KDM6BO15054 1643 aa5.61□□□□□ -1.51
RTN4-209ENST00000405240 DNMT1P26358 1616 aaKnown RBP5.61□□□□□ -1.51
RTN4-209ENST00000405240 DISP1Q96F81 1524 aa5.61□□□□□ -1.51
RTN4-209ENST00000405240 CROCC2H7BZ55 1655 aa5.61□□□□□ -1.51
RTN4-209ENST00000405240 PPP1R15AO75807 674 aaPredicted RBP5.6□□□□□ -1.51
RTN4-209ENST00000405240 EIF4G3O43432 1585 aaKnown RBP5.6□□□□□ -1.51
RTN4-209ENST00000405240 RAPGEF6Q8TEU7 1601 aa5.6□□□□□ -1.51
RTN4-209ENST00000405240 ADGBQ8N7X0 1667 aa5.6□□□□□ -1.51
RTN4-209ENST00000405240 KIAA0586Q9BVV6 1533 aa5.59□□□□□ -1.51
RTN4-209ENST00000405240 DNAJC5BQ9UF47 199 aa5.59□□□□□ -1.51
RTN4-209ENST00000405240 MTUS2Q5JR59 1369 aa5.58□□□□□ -1.52
RTN4-209ENST00000405240 P3H3Q8IVL6 736 aa5.58□□□□□ -1.52
RTN4-209ENST00000405240 ITSN2Q9NZM3 1697 aa5.58□□□□□ -1.52
RTN4-209ENST00000405240 ROCK1Q13464 1354 aa5.58□□□□□ -1.52
RTN4-209ENST00000405240 CDK13Q14004 1512 aaKnown RBP5.57□□□□□ -1.52
RTN4-209ENST00000405240 SIN3AQ96ST3 1273 aa5.57□□□□□ -1.52
RTN4-209ENST00000405240 NUP153P49790 1475 aaKnown RBP5.57□□□□□ -1.52
RTN4-209ENST00000405240 CEP170Q5SW79 1584 aa5.57□□□□□ -1.52
RTN4-209ENST00000405240 FAM50AQ14320 339 aaKnown RBP5.57□□□□□ -1.52
RTN4-209ENST00000405240 ZNF608Q9ULD9 1512 aaPredicted RBP5.57□□□□□ -1.52
RTN4-209ENST00000405240 GRIN2AQ12879 1464 aa5.57□□□□□ -1.52
RTN4-209ENST00000405240 MAGI1Q96QZ7 1491 aaPredicted RBP5.56□□□□□ -1.52
RTN4-209ENST00000405240 ITGAEP38570 1179 aa5.56□□□□□ -1.52
RTN4-209ENST00000405240 YTHDC1Q96MU7 727 aaKnown RBP5.55□□□□□ -1.52
RTN4-209ENST00000405240 CCER2I3L3R5 266 aa5.55□□□□□ -1.52
RTN4-209ENST00000405240 ADGRL2O95490 1459 aa5.55□□□□□ -1.52
RTN4-209ENST00000405240 DAPK1P53355 1430 aa5.55□□□□□ -1.52
RTN4-209ENST00000405240 CDC42BPAQ5VT25 1732 aa5.55□□□□□ -1.52
RTN4-209ENST00000405240 NUP160Q12769 1436 aa5.54□□□□□ -1.52
RTN4-209ENST00000405240 ABCA8O94911 1581 aa5.54□□□□□ -1.52
RTN4-209ENST00000405240 TEX14Q8IWB6 1497 aa5.54□□□□□ -1.52
RTN4-209ENST00000405240 ABCC5O15440 1437 aa5.54□□□□□ -1.52
RTN4-209ENST00000405240 MBD5Q9P267 1494 aa5.53□□□□□ -1.52
RTN4-209ENST00000405240 SYNJ2O15056 1496 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms