RNA–Protein interactions for RNA: ENST00000403542.6

RBM39-206, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 2,883 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-206ENST00000403542 TRIM52Q96A61 297 aa17.13■□□□□ 0.33
RBM39-206ENST00000403542 SETD5Q9C0A6 1442 aa17.12■□□□□ 0.33
RBM39-206ENST00000403542 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
RBM39-206ENST00000403542 HMGXB3Q12766 1538 aa17.12■□□□□ 0.33
RBM39-206ENST00000403542 FKBP8Q14318 412 aa17.1■□□□□ 0.33
RBM39-206ENST00000403542 FHOD3Q2V2M9 1422 aa17.09■□□□□ 0.33
RBM39-206ENST00000403542 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
RBM39-206ENST00000403542 TSHZ2Q9NRE2 1034 aa17.08■□□□□ 0.32
RBM39-206ENST00000403542 WDR97A6NE52 1622 aa17.08■□□□□ 0.32
RBM39-206ENST00000403542 LRRC9Q6ZRR7 1453 aa17.07■□□□□ 0.32
RBM39-206ENST00000403542 TIAM1Q13009 1591 aa17.07■□□□□ 0.32
RBM39-206ENST00000403542 CADPSQ9ULU8 1353 aa17.05■□□□□ 0.32
RBM39-206ENST00000403542 RAD54L2Q9Y4B4 1467 aa17.03■□□□□ 0.32
RBM39-206ENST00000403542 MYT1Q01538 1121 aa17.02■□□□□ 0.31
RBM39-206ENST00000403542 ARID3CA6NKF2 412 aa17■□□□□ 0.31
RBM39-206ENST00000403542 PPP1R15AO75807 674 aaPredicted RBP16.97■□□□□ 0.31
RBM39-206ENST00000403542 PCF11O94913 1555 aaKnown RBP16.97■□□□□ 0.31
RBM39-206ENST00000403542 FHAD1B1AJZ9 1412 aa16.96■□□□□ 0.31
RBM39-206ENST00000403542 ANP32CO43423 234 aa16.96■□□□□ 0.31
RBM39-206ENST00000403542 CHIC2Q9UKJ5 165 aa16.96■□□□□ 0.31
RBM39-206ENST00000403542 TONSLQ96HA7 1378 aa16.93■□□□□ 0.3
RBM39-206ENST00000403542 FANCD2Q9BXW9 1451 aa16.92■□□□□ 0.3
RBM39-206ENST00000403542 NESP48681 1621 aa16.91■□□□□ 0.3
RBM39-206ENST00000403542 IRX6P78412 446 aaPredicted RBP16.91■□□□□ 0.3
RBM39-206ENST00000403542 RRP7BPQ9NSQ0 103 aa16.91■□□□□ 0.3
RBM39-206ENST00000403542 MTUS2Q5JR59 1369 aa16.91■□□□□ 0.3
RBM39-206ENST00000403542 NEFLP07196 543 aa16.91■□□□□ 0.3
RBM39-206ENST00000403542 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.29
RBM39-206ENST00000403542 CNGB1Q14028 1251 aaPredicted RBP16.86■□□□□ 0.29
RBM39-206ENST00000403542 PTPRKQ15262 1439 aa16.86■□□□□ 0.29
RBM39-206ENST00000403542 MAP3K1Q13233 1512 aa16.85■□□□□ 0.29
RBM39-206ENST00000403542 POLA1P09884 1462 aaPredicted RBP16.84■□□□□ 0.29
RBM39-206ENST00000403542 FOXD1Q16676 465 aa16.83■□□□□ 0.29
RBM39-206ENST00000403542 FGD6Q6ZV73 1430 aa16.83■□□□□ 0.28
RBM39-206ENST00000403542 HNRNPUQ00839 825 aaKnown RBP eCLIP16.83■□□□□ 0.28
RBM39-206ENST00000403542 DNAJC5BQ9UF47 199 aa16.82■□□□□ 0.28
RBM39-206ENST00000403542 CCDC18Q5T9S5 1454 aa16.81■□□□□ 0.28
RBM39-206ENST00000403542 CASKIN1Q8WXD9 1431 aa16.81■□□□□ 0.28
RBM39-206ENST00000403542 CC2D2AQ9P2K1 1620 aa16.79■□□□□ 0.28
RBM39-206ENST00000403542 FYCO1Q9BQS8 1478 aa16.79■□□□□ 0.28
RBM39-206ENST00000403542 TOPBP1Q92547 1522 aa16.78■□□□□ 0.28
RBM39-206ENST00000403542 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
RBM39-206ENST00000403542 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
RBM39-206ENST00000403542 AQRO60306 1485 aaKnown RBP eCLIP16.78■□□□□ 0.282e-10■■■■□ 23
RBM39-206ENST00000403542 CCER2I3L3R5 266 aa16.76■□□□□ 0.27
RBM39-206ENST00000403542 ANP32EQ9BTT0 268 aa16.76■□□□□ 0.27
RBM39-206ENST00000403542 RBM19Q9Y4C8 960 aaKnown RBP16.75■□□□□ 0.27
RBM39-206ENST00000403542 PRDM2Q13029 1718 aa16.75■□□□□ 0.27
RBM39-206ENST00000403542 FMN1Q68DA7 1419 aa16.74■□□□□ 0.27
RBM39-206ENST00000403542 SENP3-EIF4A1A0A087X0R7 540 aa16.74■□□□□ 0.27
RBM39-206ENST00000403542 HSPA5P11021 654 aaKnown RBP16.74■□□□□ 0.27
RBM39-206ENST00000403542 ABCA10Q8WWZ4 1543 aa16.73■□□□□ 0.27
RBM39-206ENST00000403542 CCDC184Q52MB2 194 aa16.72■□□□□ 0.27
RBM39-206ENST00000403542 NCOA2Q15596 1464 aa16.72■□□□□ 0.27
RBM39-206ENST00000403542 NAIPQ13075 1403 aa16.71■□□□□ 0.27
RBM39-206ENST00000403542 UACAQ9BZF9 1416 aa16.71■□□□□ 0.26
RBM39-206ENST00000403542 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
RBM39-206ENST00000403542 WASHC2AQ641Q2 1341 aa16.7■□□□□ 0.26
RBM39-206ENST00000403542 HFM1A2PYH4 1435 aa16.7■□□□□ 0.26
RBM39-206ENST00000403542 FAM9BQ8IZU0 186 aa16.7■□□□□ 0.26
RBM39-206ENST00000403542 SNAPC4Q5SXM2 1469 aa16.69■□□□□ 0.26
RBM39-206ENST00000403542 POLR3GLQ9BT43 218 aa16.68■□□□□ 0.26
RBM39-206ENST00000403542 EFCAB5A4FU69 1503 aa16.67■□□□□ 0.26
RBM39-206ENST00000403542 MYOM3Q5VTT5 1437 aa16.67■□□□□ 0.26
RBM39-206ENST00000403542 C11orf95C9JLR9 678 aaPredicted RBP16.66■□□□□ 0.26
RBM39-206ENST00000403542 PTPN23Q9H3S7 1636 aa16.66■□□□□ 0.26
RBM39-206ENST00000403542 L3MBTL2Q969R5 705 aa16.65■□□□□ 0.26
RBM39-206ENST00000403542 URB2Q14146 1524 aaKnown RBP16.65■□□□□ 0.26
RBM39-206ENST00000403542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.65■□□□□ 0.26
RBM39-206ENST00000403542 EIF4G2P78344 907 aaKnown RBP eCLIP16.63■□□□□ 0.25
RBM39-206ENST00000403542 GAPVD1Q14C86 1478 aa16.63■□□□□ 0.25
RBM39-206ENST00000403542 MPHOSPH9Q99550 1183 aa16.63■□□□□ 0.25
RBM39-206ENST00000403542 ZNF326Q5BKZ1 582 aaKnown RBP16.62■□□□□ 0.25
RBM39-206ENST00000403542 CTTNBP2Q8WZ74 1663 aa16.61■□□□□ 0.25
RBM39-206ENST00000403542 ZNF644Q9H582 1327 aaPredicted RBP16.6■□□□□ 0.25
RBM39-206ENST00000403542 MAGI3Q5TCQ9 1506 aa16.59■□□□□ 0.25
RBM39-206ENST00000403542 LRRIQ1Q96JM4 1722 aa16.59■□□□□ 0.25
RBM39-206ENST00000403542 MRS2Q9HD23 443 aa16.58■□□□□ 0.25
RBM39-206ENST00000403542 CUL7Q14999 1698 aa16.58■□□□□ 0.24
RBM39-206ENST00000403542 GRIN2BQ13224 1484 aa16.58■□□□□ 0.24
RBM39-206ENST00000403542 NBPF8Q3BBV2 869 aa16.56■□□□□ 0.24
RBM39-206ENST00000403542 KDM6BO15054 1643 aa16.56■□□□□ 0.24
RBM39-206ENST00000403542 CDK13Q14004 1512 aaKnown RBP16.55■□□□□ 0.24
RBM39-206ENST00000403542 MSH5O43196 834 aa16.55■□□□□ 0.24
RBM39-206ENST00000403542 KDM5BQ9UGL1 1544 aa16.54■□□□□ 0.24
RBM39-206ENST00000403542 B4GALNT3Q6L9W6 998 aa16.54■□□□□ 0.24
RBM39-206ENST00000403542 SLC4A1APQ9BWU0 796 aaKnown RBP16.54■□□□□ 0.24
RBM39-206ENST00000403542 ZNF777Q9ULD5 760 aaPredicted RBP16.54■□□□□ 0.24
RBM39-206ENST00000403542 DENND4BO75064 1496 aaPredicted RBP16.53■□□□□ 0.24
RBM39-206ENST00000403542 CDK11AQ9UQ88 783 aaPredicted RBP16.53■□□□□ 0.24
RBM39-206ENST00000403542 SUPT6HQ7KZ85 1726 aaKnown RBP16.52■□□□□ 0.24
RBM39-206ENST00000403542 PRKRIP1Q9H875 184 aaPredicted RBP16.51■□□□□ 0.23
RBM39-206ENST00000403542 EHBP1L1Q8N3D4 1523 aa16.5■□□□□ 0.23
RBM39-206ENST00000403542 SAMD9Q5K651 1589 aa16.49■□□□□ 0.23
RBM39-206ENST00000403542 UGGT2Q9NYU1 1516 aa16.49■□□□□ 0.23
RBM39-206ENST00000403542 CCDC7Q96M83 1385 aa16.46■□□□□ 0.23
RBM39-206ENST00000403542 PDS5BQ9NTI5 1447 aa16.46■□□□□ 0.22
RBM39-206ENST00000403542 EPRSP07814 1512 aaKnown RBP16.46■□□□□ 0.22
RBM39-206ENST00000403542 CNTLNQ9NXG0 1405 aa16.45■□□□□ 0.22
RBM39-206ENST00000403542 KIF7Q2M1P5 1343 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 159.2 ms