RNA–Protein interactions for RNA: ENST00000394224.3

SIPA1-201, Transcript of signal-induced proliferation-associated 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIPA1, Length 3,628 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIPA1-201ENST00000394224 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
SIPA1-201ENST00000394224 RRP7BPQ9NSQ0 103 aa23.5■■□□□ 1.35
SIPA1-201ENST00000394224 FOXD1Q16676 465 aa23.48■■□□□ 1.35
SIPA1-201ENST00000394224 UNC13AQ9UPW8 1703 aa23.46■■□□□ 1.35
SIPA1-201ENST00000394224 KIF27Q86VH2 1401 aa23.46■■□□□ 1.35
SIPA1-201ENST00000394224 PHLDB1Q86UU1 1377 aa23.46■■□□□ 1.35
SIPA1-201ENST00000394224 TONSLQ96HA7 1378 aa23.45■■□□□ 1.34
SIPA1-201ENST00000394224 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
SIPA1-201ENST00000394224 ZNF326Q5BKZ1 582 aaKnown RBP23.41■■□□□ 1.34
SIPA1-201ENST00000394224 SETD5Q9C0A6 1442 aa23.41■■□□□ 1.34
SIPA1-201ENST00000394224 PPP1R15AO75807 674 aaPredicted RBP23.4■■□□□ 1.34
SIPA1-201ENST00000394224 CUX2O14529 1486 aa23.4■■□□□ 1.34
SIPA1-201ENST00000394224 ARHGAP35Q9NRY4 1499 aa23.39■■□□□ 1.33
SIPA1-201ENST00000394224 B4GALNT3Q6L9W6 998 aa23.37■■□□□ 1.33
SIPA1-201ENST00000394224 BICRAQ9NZM4 1560 aa23.36■■□□□ 1.33
SIPA1-201ENST00000394224 CCDC184Q52MB2 194 aa23.35■■□□□ 1.33
SIPA1-201ENST00000394224 PRXQ9BXM0 1461 aa23.34■■□□□ 1.33
SIPA1-201ENST00000394224 RRBP1Q9P2E9 1410 aaKnown RBP23.33■■□□□ 1.33
SIPA1-201ENST00000394224 MSH5O43196 834 aa23.32■■□□□ 1.32
SIPA1-201ENST00000394224 CDK11AQ9UQ88 783 aaPredicted RBP23.32■■□□□ 1.32
SIPA1-201ENST00000394224 NBR1Q14596 966 aa23.31■■□□□ 1.32
SIPA1-201ENST00000394224 FHOD3Q2V2M9 1422 aa23.31■■□□□ 1.32
SIPA1-201ENST00000394224 CARMIL1Q5VZK9 1371 aa23.31■■□□□ 1.32
SIPA1-201ENST00000394224 SALL2Q9Y467 1007 aaPredicted RBP23.27■■□□□ 1.32
SIPA1-201ENST00000394224 IGF1RP08069 1367 aa23.25■■□□□ 1.31
SIPA1-201ENST00000394224 CUX1P39880 1505 aa23.25■■□□□ 1.31
SIPA1-201ENST00000394224 MAPKBP1O60336 1514 aa23.24■■□□□ 1.31
SIPA1-201ENST00000394224 MRS2Q9HD23 443 aa23.21■■□□□ 1.31
SIPA1-201ENST00000394224 HSPA5P11021 654 aaKnown RBP23.21■■□□□ 1.31
SIPA1-201ENST00000394224 TOP2BQ02880 1626 aa23.2■■□□□ 1.3
SIPA1-201ENST00000394224 MTUS2Q5JR59 1369 aa23.19■■□□□ 1.3
SIPA1-201ENST00000394224 CCER2I3L3R5 266 aa23.1■■□□□ 1.29
SIPA1-201ENST00000394224 LRRC9Q6ZRR7 1453 aa23.1■■□□□ 1.29
SIPA1-201ENST00000394224 NPM2Q86SE8 214 aaKnown RBP23.08■■□□□ 1.29
SIPA1-201ENST00000394224 C11orf95C9JLR9 678 aaPredicted RBP23.08■■□□□ 1.28
SIPA1-201ENST00000394224 WASHC2AQ641Q2 1341 aa23.07■■□□□ 1.28
SIPA1-201ENST00000394224 EIF4G2P78344 907 aaKnown RBP eCLIP23.04■■□□□ 1.28
SIPA1-201ENST00000394224 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
SIPA1-201ENST00000394224 ZNF777Q9ULD5 760 aaPredicted RBP23.03■■□□□ 1.28
SIPA1-201ENST00000394224 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
SIPA1-201ENST00000394224 L3MBTL2Q969R5 705 aa23.03■■□□□ 1.28
SIPA1-201ENST00000394224 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
SIPA1-201ENST00000394224 TIAM1Q13009 1591 aa22.95■■□□□ 1.27
SIPA1-201ENST00000394224 FGD5Q6ZNL6 1462 aa22.95■■□□□ 1.27
SIPA1-201ENST00000394224 PTPRKQ15262 1439 aa22.94■■□□□ 1.26
SIPA1-201ENST00000394224 KDM2AQ9Y2K7 1162 aa22.94■■□□□ 1.26
SIPA1-201ENST00000394224 PEG3Q9GZU2 1588 aa22.93■■□□□ 1.26
SIPA1-201ENST00000394224 CCDC18Q5T9S5 1454 aa22.92■■□□□ 1.26
SIPA1-201ENST00000394224 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.262e-6■■■■■ 32.2
SIPA1-201ENST00000394224 PAK3O75914 559 aaPredicted RBP22.9■■□□□ 1.26
SIPA1-201ENST00000394224 FHAD1B1AJZ9 1412 aa22.9■■□□□ 1.26
SIPA1-201ENST00000394224 SLC4A1APQ9BWU0 796 aaKnown RBP22.9■■□□□ 1.26
SIPA1-201ENST00000394224 CCDC136Q96JN2 1154 aa22.89■■□□□ 1.26
SIPA1-201ENST00000394224 PPP4R2Q9NY27 417 aa22.89■■□□□ 1.26
SIPA1-201ENST00000394224 MPHOSPH9Q99550 1183 aa22.88■■□□□ 1.25
SIPA1-201ENST00000394224 ZNF644Q9H582 1327 aaPredicted RBP22.87■■□□□ 1.25
SIPA1-201ENST00000394224 DEKP35659 375 aaKnown RBP22.87■■□□□ 1.25
SIPA1-201ENST00000394224 RTN4Q9NQC3 1192 aaKnown RBP22.87■■□□□ 1.25
SIPA1-201ENST00000394224 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
SIPA1-201ENST00000394224 PRKRIP1Q9H875 184 aaPredicted RBP22.86■■□□□ 1.25
SIPA1-201ENST00000394224 NBPF8Q3BBV2 869 aa22.86■■□□□ 1.25
SIPA1-201ENST00000394224 TIMELESSQ9UNS1 1208 aa22.84■■□□□ 1.25
SIPA1-201ENST00000394224 PCF11O94913 1555 aaKnown RBP22.84■■□□□ 1.25
SIPA1-201ENST00000394224 FGD6Q6ZV73 1430 aa22.83■■□□□ 1.25
SIPA1-201ENST00000394224 CFTRP13569 1480 aa22.83■■□□□ 1.25
SIPA1-201ENST00000394224 CADPSQ9ULU8 1353 aa22.82■■□□□ 1.24
SIPA1-201ENST00000394224 BIVM-ERCC5R4GMW8 1640 aa22.81■■□□□ 1.24
SIPA1-201ENST00000394224 FBLN2P98095 1184 aa22.8■■□□□ 1.24
SIPA1-201ENST00000394224 SKAP1Q86WV1 359 aa22.79■■□□□ 1.24
SIPA1-201ENST00000394224 AKNAQ7Z591 1439 aa22.77■■□□□ 1.23
SIPA1-201ENST00000394224 LAS1LQ9Y4W2 734 aaKnown RBP22.76■■□□□ 1.23
SIPA1-201ENST00000394224 NESP48681 1621 aa22.76■■□□□ 1.23
SIPA1-201ENST00000394224 TMC1Q8TDI8 760 aa22.75■■□□□ 1.23
SIPA1-201ENST00000394224 NCAPD3P42695 1498 aa22.75■■□□□ 1.23
SIPA1-201ENST00000394224 NOP58Q9Y2X3 529 aaKnown RBP22.71■■□□□ 1.23
SIPA1-201ENST00000394224 KIF7Q2M1P5 1343 aa22.71■■□□□ 1.23
SIPA1-201ENST00000394224 NAIPQ13075 1403 aa22.7■■□□□ 1.22
SIPA1-201ENST00000394224 UACAQ9BZF9 1416 aa22.7■■□□□ 1.22
SIPA1-201ENST00000394224 FANCIQ9NVI1 1328 aa22.68■■□□□ 1.22
SIPA1-201ENST00000394224 RTL5Q5HYW3 569 aaPredicted RBP22.67■■□□□ 1.22
SIPA1-201ENST00000394224 ANP32AP39687 249 aaKnown RBP22.67■■□□□ 1.22
SIPA1-201ENST00000394224 RGL3Q3MIN7 710 aa22.67■■□□□ 1.22
SIPA1-201ENST00000394224 FMN1Q68DA7 1419 aa22.66■■□□□ 1.22
SIPA1-201ENST00000394224 NCOA2Q15596 1464 aa22.65■■□□□ 1.22
SIPA1-201ENST00000394224 FANCD2Q9BXW9 1451 aa22.65■■□□□ 1.22
SIPA1-201ENST00000394224 ZBTB47Q9UFB7 747 aaPredicted RBP22.63■■□□□ 1.21
SIPA1-201ENST00000394224 PLIN1O60240 522 aa22.63■■□□□ 1.21
SIPA1-201ENST00000394224 CCDC7Q96M83 1385 aa22.62■■□□□ 1.21
SIPA1-201ENST00000394224 CASKIN1Q8WXD9 1431 aa22.6■■□□□ 1.21
SIPA1-201ENST00000394224 HFM1A2PYH4 1435 aa22.6■■□□□ 1.21
SIPA1-201ENST00000394224 MYOM3Q5VTT5 1437 aa22.57■■□□□ 1.2
SIPA1-201ENST00000394224 PKD2Q13563 968 aa22.57■■□□□ 1.2
SIPA1-201ENST00000394224 EXOC6Q8TAG9 804 aa22.56■■□□□ 1.2
SIPA1-201ENST00000394224 CARD11Q9BXL7 1154 aa22.56■■□□□ 1.2
SIPA1-201ENST00000394224 ZBED9Q6R2W3 1325 aa22.56■■□□□ 1.2
SIPA1-201ENST00000394224 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.56■■□□□ 1.2
SIPA1-201ENST00000394224 CC2D1BQ5T0F9 858 aaKnown RBP22.55■■□□□ 1.2
SIPA1-201ENST00000394224 CNTLNQ9NXG0 1405 aa22.55■■□□□ 1.2
SIPA1-201ENST00000394224 SLC4A3P48751 1232 aa22.54■■□□□ 1.2
SIPA1-201ENST00000394224 POLA1P09884 1462 aaPredicted RBP22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms