RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 CSRNP3Q8WYN3 585 aa21.4■■□□□ 1.02
SHANK1-204ENST00000391814 WDR43Q15061 677 aaKnown RBP eCLIP21.39■■□□□ 1.02
SHANK1-204ENST00000391814 ABCC9O60706 1549 aa21.37■■□□□ 1.01
SHANK1-204ENST00000391814 ZNF777Q9ULD5 760 aaPredicted RBP21.37■■□□□ 1.01
SHANK1-204ENST00000391814 MYO15BQ96JP2 1530 aa21.37■■□□□ 1.01
SHANK1-204ENST00000391814 SENP3-EIF4A1A0A087X0R7 540 aa21.36■■□□□ 1.01
SHANK1-204ENST00000391814 CDK11BP21127 795 aaKnown RBP21.36■■□□□ 1.01
SHANK1-204ENST00000391814 GOLGA6L22H0YM25 854 aa21.34■■□□□ 1.01
SHANK1-204ENST00000391814 TPRNQ4KMQ1 711 aa21.32■■□□□ 1
SHANK1-204ENST00000391814 ARID4BQ4LE39 1312 aaPredicted RBP21.28■■□□□ 1
SHANK1-204ENST00000391814 RBM19Q9Y4C8 960 aaKnown RBP21.28■■□□□ 1
SHANK1-204ENST00000391814 PPP4R2Q9NY27 417 aa21.28■■□□□ 1
SHANK1-204ENST00000391814 A0A0G2JS52 829 aa21.25■□□□□ 0.99
SHANK1-204ENST00000391814 MYH16Q9H6N6 1097 aa21.22■□□□□ 0.99
SHANK1-204ENST00000391814 B4GALNT3Q6L9W6 998 aa21.2■□□□□ 0.98
SHANK1-204ENST00000391814 CHIC2Q9UKJ5 165 aa21.18■□□□□ 0.98
SHANK1-204ENST00000391814 KDM2AQ9Y2K7 1162 aa21.15■□□□□ 0.98
SHANK1-204ENST00000391814 TULP1O00294 542 aaPredicted RBP21.14■□□□□ 0.97
SHANK1-204ENST00000391814 CHGAP10645 457 aaKnown RBP21.14■□□□□ 0.97
SHANK1-204ENST00000391814 PLEKHG5O94827 1062 aa21.13■□□□□ 0.97
SHANK1-204ENST00000391814 EIF4G2P78344 907 aaKnown RBP eCLIP21.11■□□□□ 0.97
SHANK1-204ENST00000391814 PLCB2Q00722 1185 aa21.11■□□□□ 0.97
SHANK1-204ENST00000391814 L1TD1Q5T7N2 865 aaKnown RBP21.11■□□□□ 0.97
SHANK1-204ENST00000391814 ARID3AQ99856 593 aa21.11■□□□□ 0.97
SHANK1-204ENST00000391814 RGS3P49796 1198 aa21.11■□□□□ 0.97
SHANK1-204ENST00000391814 MSNP26038 577 aaKnown RBP21.08■□□□□ 0.97
SHANK1-204ENST00000391814 TSHZ2Q9NRE2 1034 aa21.07■□□□□ 0.96
SHANK1-204ENST00000391814 ESF1Q9H501 851 aaKnown RBP21.05■□□□□ 0.96
SHANK1-204ENST00000391814 ZBTB7CA1YPR0 619 aa21.05■□□□□ 0.96
SHANK1-204ENST00000391814 HSP90AB1P08238 724 aaKnown RBP21.05■□□□□ 0.96
SHANK1-204ENST00000391814 SPRYD3Q8NCJ5 442 aa21.04■□□□□ 0.96
SHANK1-204ENST00000391814 SENP3Q9H4L4 574 aaPredicted RBP21.02■□□□□ 0.96
SHANK1-204ENST00000391814 STAG3Q9UJ98 1225 aa21.01■□□□□ 0.95
SHANK1-204ENST00000391814 ZRSR1Q15695 479 aaKnown RBP21■□□□□ 0.95
SHANK1-204ENST00000391814 CASC1Q6TDU7 716 aa21■□□□□ 0.95
SHANK1-204ENST00000391814 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.98■□□□□ 0.95
SHANK1-204ENST00000391814 CHAF1AQ13111 956 aaPredicted RBP20.95■□□□□ 0.94
SHANK1-204ENST00000391814 TAOK2Q9UL54 1235 aa20.94■□□□□ 0.94
SHANK1-204ENST00000391814 FTSJ3Q8IY81 847 aaKnown RBP20.94■□□□□ 0.94
SHANK1-204ENST00000391814 NCBP3Q53F19 620 aaKnown RBP20.93■□□□□ 0.94
SHANK1-204ENST00000391814 GOLGA6L6A8MZA4 724 aa20.9■□□□□ 0.94
SHANK1-204ENST00000391814 HSCBQ8IWL3 235 aa20.89■□□□□ 0.94
SHANK1-204ENST00000391814 GZF1Q9H116 711 aaPredicted RBP20.87■□□□□ 0.93
SHANK1-204ENST00000391814 PNNQ9H307 717 aaKnown RBP20.86■□□□□ 0.93
SHANK1-204ENST00000391814 RRP7BPQ9NSQ0 103 aa20.86■□□□□ 0.93
SHANK1-204ENST00000391814 FRAT1Q92837 279 aaPredicted RBP20.84■□□□□ 0.93
SHANK1-204ENST00000391814 CLIP1P30622 1438 aa20.84■□□□□ 0.93
SHANK1-204ENST00000391814 CEP162Q5TB80 1403 aa20.81■□□□□ 0.92
SHANK1-204ENST00000391814 DRC7Q8IY82 874 aa20.81■□□□□ 0.92
SHANK1-204ENST00000391814 NEUROD2Q15784 382 aa20.78■□□□□ 0.92
SHANK1-204ENST00000391814 SIN3AQ96ST3 1273 aa20.78■□□□□ 0.92
SHANK1-204ENST00000391814 VSIG10Q8N0Z9 540 aa20.78■□□□□ 0.92
SHANK1-204ENST00000391814 SCRIBQ14160 1630 aa20.77■□□□□ 0.92
SHANK1-204ENST00000391814 HSP90AA2PQ14568 343 aaPredicted RBP20.77■□□□□ 0.92
SHANK1-204ENST00000391814 IPO9Q96P70 1041 aaKnown RBP20.76■□□□□ 0.91
SHANK1-204ENST00000391814 MTUS2Q5JR59 1369 aa20.75■□□□□ 0.91
SHANK1-204ENST00000391814 TNNT3P45378 269 aaPredicted RBP20.74■□□□□ 0.91
SHANK1-204ENST00000391814 GOLGA6L3A6NEY3 463 aa20.73■□□□□ 0.91
SHANK1-204ENST00000391814 RSPH6AQ9H0K4 717 aa20.73■□□□□ 0.91
SHANK1-204ENST00000391814 CC2D1BQ5T0F9 858 aaKnown RBP20.73■□□□□ 0.91
SHANK1-204ENST00000391814 SLKQ9H2G2 1235 aaPredicted RBP20.72■□□□□ 0.91
SHANK1-204ENST00000391814 KNSTRNQ9Y448 316 aa20.72■□□□□ 0.91
SHANK1-204ENST00000391814 C14orf37Q86TY3 774 aa20.69■□□□□ 0.9
SHANK1-204ENST00000391814 CCER2I3L3R5 266 aa20.68■□□□□ 0.9
SHANK1-204ENST00000391814 NRDCO43847 1150 aa20.68■□□□□ 0.9
SHANK1-204ENST00000391814 CFAP53Q96M91 514 aa20.67■□□□□ 0.9
SHANK1-204ENST00000391814 CARD11Q9BXL7 1154 aa20.66■□□□□ 0.9
SHANK1-204ENST00000391814 GOLGA3Q08378 1498 aa20.66■□□□□ 0.9
SHANK1-204ENST00000391814 KIAA2012Q0VF49 1180 aa20.64■□□□□ 0.9
SHANK1-204ENST00000391814 GBP4Q96PP9 640 aa20.64■□□□□ 0.89
SHANK1-204ENST00000391814 GOLGA6L4A6NEF3 574 aa20.63■□□□□ 0.89
SHANK1-204ENST00000391814 RGL3Q3MIN7 710 aa20.63■□□□□ 0.89
SHANK1-204ENST00000391814 TIMELESSQ9UNS1 1208 aa20.63■□□□□ 0.89
SHANK1-204ENST00000391814 ZCCHC6Q5VYS8 1495 aaKnown RBP20.63■□□□□ 0.89
SHANK1-204ENST00000391814 PTMSP20962 102 aa20.62■□□□□ 0.89
SHANK1-204ENST00000391814 TCERG1O14776 1098 aaKnown RBP20.61■□□□□ 0.89
SHANK1-204ENST00000391814 NPM1P06748 294 aaKnown RBP eCLIP20.6■□□□□ 0.89
SHANK1-204ENST00000391814 NAP1L2Q9ULW6 460 aaPredicted RBP20.6■□□□□ 0.89
SHANK1-204ENST00000391814 TSPY4P0CV99 314 aa20.58■□□□□ 0.89
SHANK1-204ENST00000391814 TSPY10P0CW01 314 aa20.58■□□□□ 0.89
SHANK1-204ENST00000391814 MAPK8IP3Q9UPT6 1336 aa20.57■□□□□ 0.88
SHANK1-204ENST00000391814 FGD1P98174 961 aa20.54■□□□□ 0.88
SHANK1-204ENST00000391814 KCNJ4P48050 445 aa20.53■□□□□ 0.88
SHANK1-204ENST00000391814 MS4A1P11836 297 aa20.52■□□□□ 0.88
SHANK1-204ENST00000391814 CLSTN1O94985 981 aa20.52■□□□□ 0.88
SHANK1-204ENST00000391814 MCCP23508 829 aa20.51■□□□□ 0.87
SHANK1-204ENST00000391814 GSE1Q14687 1217 aa20.51■□□□□ 0.87
SHANK1-204ENST00000391814 OS9Q13438 667 aaPredicted RBP20.5■□□□□ 0.87
SHANK1-204ENST00000391814 RCAN3Q9UKA8 241 aa20.49■□□□□ 0.87
SHANK1-204ENST00000391814 CDCA8Q53HL2 280 aa20.49■□□□□ 0.87
SHANK1-204ENST00000391814 FOXD4L1Q9NU39 408 aa20.49■□□□□ 0.87
SHANK1-204ENST00000391814 CHMP4BQ9H444 224 aaKnown RBP20.48■□□□□ 0.87
SHANK1-204ENST00000391814 MFAP1P55081 439 aaKnown RBP20.48■□□□□ 0.87
SHANK1-204ENST00000391814 HSPA5P11021 654 aaKnown RBP20.46■□□□□ 0.87
SHANK1-204ENST00000391814 SLC4A3P48751 1232 aa20.45■□□□□ 0.86
SHANK1-204ENST00000391814 RSF1Q96T23 1441 aaPredicted RBP20.45■□□□□ 0.86
SHANK1-204ENST00000391814 USP35Q9P2H5 1018 aa20.44■□□□□ 0.86
SHANK1-204ENST00000391814 SYAP1Q96A49 352 aaPredicted RBP20.42■□□□□ 0.86
SHANK1-204ENST00000391814 U2SURPO15042 1029 aaKnown RBP20.42■□□□□ 0.86
SHANK1-204ENST00000391814 TNIKQ9UKE5 1360 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms