RNA–Protein interactions for RNA: ENST00000373264.4

CDK9-201, Transcript of cyclin dependent kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK9, Length 2,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-201ENST00000373264 TDRD9Q8NDG6 1382 aaKnown RBP35.25■■■■□ 3.23
CDK9-201ENST00000373264 LAMC3Q9Y6N6 1575 aa35.24■■■■□ 3.23
CDK9-201ENST00000373264 PCF11O94913 1555 aaKnown RBP35.23■■■■□ 3.23
CDK9-201ENST00000373264 LRRC9Q6ZRR7 1453 aa35.21■■■■□ 3.23
CDK9-201ENST00000373264 ACIN1Q9UKV3 1341 aaKnown RBP35.2■■■■□ 3.23
CDK9-201ENST00000373264 PHLDB1Q86UU1 1377 aa35.19■■■■□ 3.22
CDK9-201ENST00000373264 MAP3K1Q13233 1512 aa35.15■■■■□ 3.22
CDK9-201ENST00000373264 FHAD1B1AJZ9 1412 aa35.14■■■■□ 3.22
CDK9-201ENST00000373264 WDR97A6NE52 1622 aa35.13■■■■□ 3.21
CDK9-201ENST00000373264 MIER1Q8N108 512 aa35.12■■■■□ 3.21
CDK9-201ENST00000373264 CUL7Q14999 1698 aa35.12■■■■□ 3.21
CDK9-201ENST00000373264 KIF21AQ7Z4S6 1674 aa35.08■■■■□ 3.21
CDK9-201ENST00000373264 CLSPNQ9HAW4 1339 aa35.08■■■■□ 3.21
CDK9-201ENST00000373264 FAM50AQ14320 339 aaKnown RBP35.06■■■■□ 3.2
CDK9-201ENST00000373264 CTTNBP2Q8WZ74 1663 aa35.06■■■■□ 3.2
CDK9-201ENST00000373264 RAB3GAP2Q9H2M9 1393 aa35.05■■■■□ 3.2
CDK9-201ENST00000373264 CFAP43Q8NDM7 1665 aa35.05■■■■□ 3.2
CDK9-201ENST00000373264 PDS5BQ9NTI5 1447 aa35.04■■■■□ 3.2
CDK9-201ENST00000373264 YTHDC1Q96MU7 727 aaKnown RBP35.03■■■■□ 3.2
CDK9-201ENST00000373264 ABCA5Q8WWZ7 1642 aa35.02■■■■□ 3.2
CDK9-201ENST00000373264 GAPVD1Q14C86 1478 aa35.01■■■■□ 3.19
CDK9-201ENST00000373264 EFCAB5A4FU69 1503 aa34.97■■■■□ 3.19
CDK9-201ENST00000373264 CASKIN1Q8WXD9 1431 aa34.94■■■■□ 3.18
CDK9-201ENST00000373264 FYCO1Q9BQS8 1478 aa34.94■■■■□ 3.18
CDK9-201ENST00000373264 CENPBP07199 599 aaPredicted RBP34.93■■■■□ 3.18
CDK9-201ENST00000373264 MAPKBP1O60336 1514 aa34.86■■■■□ 3.17
CDK9-201ENST00000373264 SETD5Q9C0A6 1442 aa34.86■■■■□ 3.17
CDK9-201ENST00000373264 GTF3C3Q9Y5Q9 886 aa34.86■■■■□ 3.17
CDK9-201ENST00000373264 SNAPC4Q5SXM2 1469 aa34.85■■■■□ 3.17
CDK9-201ENST00000373264 TARBP1Q13395 1621 aaKnown RBP34.83■■■■□ 3.17
CDK9-201ENST00000373264 AQRO60306 1485 aaKnown RBP eCLIP34.83■■■■□ 3.173e-8■■■■■ 37.2
CDK9-201ENST00000373264 FMN1Q68DA7 1419 aa34.8■■■■□ 3.16
CDK9-201ENST00000373264 SAMD9Q5K651 1589 aa34.77■■■■□ 3.16
CDK9-201ENST00000373264 LRRIQ1Q96JM4 1722 aa34.77■■■■□ 3.16
CDK9-201ENST00000373264 SIN3AQ96ST3 1273 aa34.73■■■■□ 3.15
CDK9-201ENST00000373264 MTUS2Q5JR59 1369 aa34.69■■■■□ 3.14
CDK9-201ENST00000373264 FGD6Q6ZV73 1430 aa34.65■■■■□ 3.14
CDK9-201ENST00000373264 GRIN2BQ13224 1484 aa34.64■■■■□ 3.14
CDK9-201ENST00000373264 PBRM1Q86U86 1689 aa34.62■■■■□ 3.13
CDK9-201ENST00000373264 PTPRKQ15262 1439 aa34.58■■■■□ 3.13
CDK9-201ENST00000373264 MRC2Q9UBG0 1479 aa34.56■■■■□ 3.12
CDK9-201ENST00000373264 NCOA2Q15596 1464 aa34.55■■■■□ 3.12
CDK9-201ENST00000373264 ARID3CA6NKF2 412 aa34.55■■■■□ 3.12
CDK9-201ENST00000373264 ZNF608Q9ULD9 1512 aaPredicted RBP34.53■■■■□ 3.12
CDK9-201ENST00000373264 MAGI3Q5TCQ9 1506 aa34.52■■■■□ 3.12
CDK9-201ENST00000373264 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.51■■■■□ 3.11
CDK9-201ENST00000373264 ADAMTS12P58397 1594 aa34.49■■■■□ 3.11
CDK9-201ENST00000373264 IQGAP2Q13576 1575 aa34.44■■■■□ 3.1
CDK9-201ENST00000373264 MYOM3Q5VTT5 1437 aa34.44■■■■□ 3.1
CDK9-201ENST00000373264 SUPT6HQ7KZ85 1726 aaKnown RBP34.39■■■■□ 3.1
CDK9-201ENST00000373264 THOC2Q8NI27 1593 aaKnown RBP34.38■■■■□ 3.09
CDK9-201ENST00000373264 EHBP1L1Q8N3D4 1523 aa34.38■■■■□ 3.09
CDK9-201ENST00000373264 CCDC18Q5T9S5 1454 aa34.38■■■■□ 3.09
CDK9-201ENST00000373264 CDK13Q14004 1512 aaKnown RBP34.36■■■■□ 3.09
CDK9-201ENST00000373264 UGGT2Q9NYU1 1516 aa34.34■■■■□ 3.09
CDK9-201ENST00000373264 HIRIP3Q9BW71 556 aaPredicted RBP34.33■■■■□ 3.09
CDK9-201ENST00000373264 HFM1A2PYH4 1435 aa34.33■■■■□ 3.09
CDK9-201ENST00000373264 PTPN23Q9H3S7 1636 aa34.32■■■■□ 3.08
CDK9-201ENST00000373264 CHIC2Q9UKJ5 165 aa34.31■■■■□ 3.08
CDK9-201ENST00000373264 NAIPQ13075 1403 aa34.3■■■■□ 3.08
CDK9-201ENST00000373264 EPRSP07814 1512 aaKnown RBP34.3■■■■□ 3.08
CDK9-201ENST00000373264 IFT140Q96RY7 1462 aa34.29■■■■□ 3.08
CDK9-201ENST00000373264 ARHGEF11O15085 1522 aa34.28■■■■□ 3.08
CDK9-201ENST00000373264 RRP7BPQ9NSQ0 103 aa34.27■■■■□ 3.08
CDK9-201ENST00000373264 HECW1Q76N89 1606 aa34.27■■■■□ 3.08
CDK9-201ENST00000373264 WDR62O43379 1518 aa34.27■■■■□ 3.08
CDK9-201ENST00000373264 KCNH8Q96L42 1107 aa34.24■■■■□ 3.07
CDK9-201ENST00000373264 PPP1R15AO75807 674 aaPredicted RBP34.23■■■■□ 3.07
CDK9-201ENST00000373264 UACAQ9BZF9 1416 aa34.2■■■■□ 3.07
CDK9-201ENST00000373264 DDX10Q13206 875 aaKnown RBP34.19■■■■□ 3.06
CDK9-201ENST00000373264 EIF4G3O43432 1585 aaKnown RBP34.16■■■■□ 3.06
CDK9-201ENST00000373264 DISP1Q96F81 1524 aa34.15■■■■□ 3.06
CDK9-201ENST00000373264 ERCC6Q03468 1493 aa34.13■■■■□ 3.05
CDK9-201ENST00000373264 TIMELESSQ9UNS1 1208 aa34.12■■■■□ 3.05
CDK9-201ENST00000373264 KIAA0586Q9BVV6 1533 aa34.11■■■■□ 3.05
CDK9-201ENST00000373264 TONSLQ96HA7 1378 aa34.1■■■■□ 3.05
CDK9-201ENST00000373264 GRIN2AQ12879 1464 aa34.1■■■■□ 3.05
CDK9-201ENST00000373264 TCOF1Q13428 1488 aaKnown RBP34.1■■■■□ 3.05
CDK9-201ENST00000373264 KDM6BO15054 1643 aa34.09■■■■□ 3.05
CDK9-201ENST00000373264 KIAA0556O60303 1618 aa34.09■■■■□ 3.05
CDK9-201ENST00000373264 FBLN2P98095 1184 aa34.05■■■■□ 3.04
CDK9-201ENST00000373264 NUP153P49790 1475 aaKnown RBP34.03■■■■□ 3.04
CDK9-201ENST00000373264 TRIM52Q96A61 297 aa34.02■■■■□ 3.04
CDK9-201ENST00000373264 ZNF644Q9H582 1327 aaPredicted RBP34.02■■■■□ 3.04
CDK9-201ENST00000373264 DENND4BO75064 1496 aaPredicted RBP34■■■■□ 3.03
CDK9-201ENST00000373264 CHMP7Q8WUX9 453 aaPredicted RBP33.98■■■■□ 3.03
CDK9-201ENST00000373264 FOXD1Q16676 465 aa33.95■■■■□ 3.03
CDK9-201ENST00000373264 GCC2Q8IWJ2 1684 aa33.94■■■■□ 3.02
CDK9-201ENST00000373264 MIA2Q96PC5 1412 aa33.94■■■■□ 3.02
CDK9-201ENST00000373264 CEP170Q5SW79 1584 aa33.93■■■■□ 3.02
CDK9-201ENST00000373264 RAPGEF6Q8TEU7 1601 aa33.92■■■■□ 3.02
CDK9-201ENST00000373264 KDM5BQ9UGL1 1544 aa33.92■■■■□ 3.02
CDK9-201ENST00000373264 PLB1Q6P1J6 1458 aa33.89■■■■□ 3.02
CDK9-201ENST00000373264 PELP1Q8IZL8 1130 aaKnown RBP33.89■■■■□ 3.02
CDK9-201ENST00000373264 PRG4Q92954 1404 aaPredicted RBP33.87■■■■□ 3.01
CDK9-201ENST00000373264 MAGI1Q96QZ7 1491 aaPredicted RBP33.85■■■■□ 3.01
CDK9-201ENST00000373264 MPHOSPH9Q99550 1183 aa33.84■■■■□ 3.01
CDK9-201ENST00000373264 SYNJ2O15056 1496 aa33.83■■■■□ 3.01
CDK9-201ENST00000373264 DAPK1P53355 1430 aa33.83■■■■□ 3.01
CDK9-201ENST00000373264 ABCC5O15440 1437 aa33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms