RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 ARID4BQ4LE39 1312 aaPredicted RBP19.98■□□□□ 0.79
COL5A1-201ENST00000371817 MIER1Q8N108 512 aa19.98■□□□□ 0.79
COL5A1-201ENST00000371817 MRS2Q9HD23 443 aa19.97■□□□□ 0.79
COL5A1-201ENST00000371817 PLCB2Q00722 1185 aa19.96■□□□□ 0.79
COL5A1-201ENST00000371817 CASC1Q6TDU7 716 aa19.94■□□□□ 0.78
COL5A1-201ENST00000371817 DCAF1Q9Y4B6 1507 aa19.94■□□□□ 0.78
COL5A1-201ENST00000371817 PNNQ9H307 717 aaKnown RBP19.88■□□□□ 0.77
COL5A1-201ENST00000371817 TPRNQ4KMQ1 711 aa19.87■□□□□ 0.77
COL5A1-201ENST00000371817 HSP90AA2PQ14568 343 aaPredicted RBP19.84■□□□□ 0.77
COL5A1-201ENST00000371817 HSP90AB1P08238 724 aaKnown RBP19.82■□□□□ 0.76
COL5A1-201ENST00000371817 ARID3AQ99856 593 aa19.82■□□□□ 0.76
COL5A1-201ENST00000371817 SUPT16HQ9Y5B9 1047 aaKnown RBP19.8■□□□□ 0.76
COL5A1-201ENST00000371817 CALRP27797 417 aaKnown RBP19.8■□□□□ 0.76
COL5A1-201ENST00000371817 PPP4R2Q9NY27 417 aa19.78■□□□□ 0.76
COL5A1-201ENST00000371817 DRC7Q8IY82 874 aa19.77■□□□□ 0.76
COL5A1-201ENST00000371817 RSPH6AQ9H0K4 717 aa19.76■□□□□ 0.75
COL5A1-201ENST00000371817 CCDC180Q9P1Z9 1646 aa19.75■□□□□ 0.75
COL5A1-201ENST00000371817 KIAA2012Q0VF49 1180 aa19.75■□□□□ 0.75
COL5A1-201ENST00000371817 PTMSP20962 102 aa19.73■□□□□ 0.75
COL5A1-201ENST00000371817 VSIG10Q8N0Z9 540 aa19.7■□□□□ 0.74
COL5A1-201ENST00000371817 CSRNP3Q8WYN3 585 aa19.7■□□□□ 0.74
COL5A1-201ENST00000371817 HSCBQ8IWL3 235 aa19.69■□□□□ 0.74
COL5A1-201ENST00000371817 GOLGA6L1Q8N7Z2 621 aa19.69■□□□□ 0.74
COL5A1-201ENST00000371817 RBM19Q9Y4C8 960 aaKnown RBP19.69■□□□□ 0.74
COL5A1-201ENST00000371817 FTSJ3Q8IY81 847 aaKnown RBP19.68■□□□□ 0.74
COL5A1-201ENST00000371817 SETQ01105 290 aaPredicted RBP19.68■□□□□ 0.74
COL5A1-201ENST00000371817 GOLGA6L4A6NEF3 574 aa19.66■□□□□ 0.74
COL5A1-201ENST00000371817 RGS3P49796 1198 aa19.62■□□□□ 0.73
COL5A1-201ENST00000371817 NOC3LQ8WTT2 800 aaKnown RBP19.6■□□□□ 0.73
COL5A1-201ENST00000371817 USP35Q9P2H5 1018 aa19.59■□□□□ 0.73
COL5A1-201ENST00000371817 TULP1O00294 542 aaPredicted RBP19.59■□□□□ 0.73
COL5A1-201ENST00000371817 GBP4Q96PP9 640 aa19.57■□□□□ 0.72
COL5A1-201ENST00000371817 ZBTB7CA1YPR0 619 aa19.57■□□□□ 0.72
COL5A1-201ENST00000371817 B4GALNT3Q6L9W6 998 aa19.55■□□□□ 0.72
COL5A1-201ENST00000371817 EIF4G2P78344 907 aaKnown RBP eCLIP19.54■□□□□ 0.72
COL5A1-201ENST00000371817 GOLGA6L3A6NEY3 463 aa19.52■□□□□ 0.72
COL5A1-201ENST00000371817 GZF1Q9H116 711 aaPredicted RBP19.52■□□□□ 0.71
COL5A1-201ENST00000371817 FGD1P98174 961 aa19.52■□□□□ 0.71
COL5A1-201ENST00000371817 SYAP1Q96A49 352 aaPredicted RBP19.5■□□□□ 0.71
COL5A1-201ENST00000371817 ZNF777Q9ULD5 760 aaPredicted RBP19.5■□□□□ 0.71
COL5A1-201ENST00000371817 CHMP4BQ9H444 224 aaKnown RBP19.49■□□□□ 0.71
COL5A1-201ENST00000371817 SPRYD3Q8NCJ5 442 aa19.47■□□□□ 0.71
COL5A1-201ENST00000371817 HIRIP3Q9BW71 556 aaPredicted RBP19.47■□□□□ 0.71
COL5A1-201ENST00000371817 APPP05067 770 aa19.46■□□□□ 0.71
COL5A1-201ENST00000371817 A0A0U1RQG5 324 aaPredicted RBP19.45■□□□□ 0.7
COL5A1-201ENST00000371817 CFAP44Q96MT7 982 aa19.44■□□□□ 0.7
COL5A1-201ENST00000371817 KCNJ4P48050 445 aa19.44■□□□□ 0.7
COL5A1-201ENST00000371817 ZNF771Q7L3S4 317 aaPredicted RBP19.44■□□□□ 0.7
COL5A1-201ENST00000371817 MCCP23508 829 aa19.44■□□□□ 0.7
COL5A1-201ENST00000371817 STAG3Q9UJ98 1225 aa19.43■□□□□ 0.7
COL5A1-201ENST00000371817 CHGAP10645 457 aaKnown RBP19.43■□□□□ 0.7
COL5A1-201ENST00000371817 MS4A1P11836 297 aa19.41■□□□□ 0.7
COL5A1-201ENST00000371817 P3H3Q8IVL6 736 aa19.39■□□□□ 0.7
COL5A1-201ENST00000371817 TAOK2Q9UL54 1235 aa19.39■□□□□ 0.7
COL5A1-201ENST00000371817 NAP1L2Q9ULW6 460 aaPredicted RBP19.39■□□□□ 0.69
COL5A1-201ENST00000371817 KDM2AQ9Y2K7 1162 aa19.37■□□□□ 0.69
COL5A1-201ENST00000371817 PKNOX2Q96KN3 472 aa19.36■□□□□ 0.69
COL5A1-201ENST00000371817 HTATSF1O43719 755 aaKnown RBP19.36■□□□□ 0.69
COL5A1-201ENST00000371817 IPO9Q96P70 1041 aaKnown RBP19.36■□□□□ 0.69
COL5A1-201ENST00000371817 TPM4P67936 248 aa19.35■□□□□ 0.69
COL5A1-201ENST00000371817 CFAP53Q96M91 514 aa19.35■□□□□ 0.69
COL5A1-201ENST00000371817 PHF14O94880 888 aa19.35■□□□□ 0.69
COL5A1-201ENST00000371817 PODXL2Q9NZ53 605 aa19.34■□□□□ 0.69
COL5A1-201ENST00000371817 TIMELESSQ9UNS1 1208 aa19.33■□□□□ 0.69
COL5A1-201ENST00000371817 FRAT1Q92837 279 aaPredicted RBP19.33■□□□□ 0.68
COL5A1-201ENST00000371817 ARID3CA6NKF2 412 aa19.33■□□□□ 0.68
COL5A1-201ENST00000371817 SLKQ9H2G2 1235 aaPredicted RBP19.32■□□□□ 0.68
COL5A1-201ENST00000371817 ESF1Q9H501 851 aaKnown RBP19.32■□□□□ 0.68
COL5A1-201ENST00000371817 GPS2Q13227 327 aa19.31■□□□□ 0.68
COL5A1-201ENST00000371817 KNSTRNQ9Y448 316 aa19.29■□□□□ 0.68
COL5A1-201ENST00000371817 TEX35Q5T0J7 233 aa19.29■□□□□ 0.68
COL5A1-201ENST00000371817 NOM1Q5C9Z4 860 aaKnown RBP19.29■□□□□ 0.68
COL5A1-201ENST00000371817 GNL2Q13823 731 aaKnown RBP19.28■□□□□ 0.68
COL5A1-201ENST00000371817 SENP3-EIF4A1A0A087X0R7 540 aa19.27■□□□□ 0.68
COL5A1-201ENST00000371817 CALD1Q05682 793 aaKnown RBP19.27■□□□□ 0.68
COL5A1-201ENST00000371817 OS9Q13438 667 aaPredicted RBP19.26■□□□□ 0.67
COL5A1-201ENST00000371817 TCERG1O14776 1098 aaKnown RBP19.26■□□□□ 0.67
COL5A1-201ENST00000371817 NCBP3Q53F19 620 aaKnown RBP19.25■□□□□ 0.67
COL5A1-201ENST00000371817 TSHZ2Q9NRE2 1034 aa19.25■□□□□ 0.67
COL5A1-201ENST00000371817 CLSTN1O94985 981 aa19.25■□□□□ 0.67
COL5A1-201ENST00000371817 FBLN2P98095 1184 aa19.24■□□□□ 0.67
COL5A1-201ENST00000371817 GSE1Q14687 1217 aa19.23■□□□□ 0.67
COL5A1-201ENST00000371817 CSPP1Q1MSJ5 1256 aa19.23■□□□□ 0.67
COL5A1-201ENST00000371817 CDCA8Q53HL2 280 aa19.22■□□□□ 0.67
COL5A1-201ENST00000371817 DDX11L8A8MPP1 907 aa19.21■□□□□ 0.67
COL5A1-201ENST00000371817 MAPK8IP3Q9UPT6 1336 aa19.2■□□□□ 0.66
COL5A1-201ENST00000371817 FAM13BQ9NYF5 915 aa19.19■□□□□ 0.66
COL5A1-201ENST00000371817 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.19■□□□□ 0.66
COL5A1-201ENST00000371817 CHIC2Q9UKJ5 165 aa19.19■□□□□ 0.66
COL5A1-201ENST00000371817 TPM3P06753 285 aa19.17■□□□□ 0.66
COL5A1-201ENST00000371817 CCDC34Q96HJ3 373 aa19.17■□□□□ 0.66
COL5A1-201ENST00000371817 KIAA1211Q6ZU35 1233 aa19.17■□□□□ 0.66
COL5A1-201ENST00000371817 MTERF4Q7Z6M4 381 aaKnown RBP19.16■□□□□ 0.66
COL5A1-201ENST00000371817 PATL2C9JE40 543 aaKnown RBP19.16■□□□□ 0.66
COL5A1-201ENST00000371817 NEUROD2Q15784 382 aa19.16■□□□□ 0.66
COL5A1-201ENST00000371817 RRP12Q5JTH9 1297 aaKnown RBP19.15■□□□□ 0.66
COL5A1-201ENST00000371817 A0A0G2JS52 829 aa19.15■□□□□ 0.66
COL5A1-201ENST00000371817 CCDC70Q6NSX1 233 aa19.13■□□□□ 0.65
COL5A1-201ENST00000371817 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.13■□□□□ 0.65
COL5A1-201ENST00000371817 MAP7D2Q96T17 732 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms