RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 FAM9BQ8IZU0 186 aa9.16□□□□□ -0.94
CSDE1-203ENST00000358528 RBM19Q9Y4C8 960 aaKnown RBP9.16□□□□□ -0.94
CSDE1-203ENST00000358528 ATAD2BQ9ULI0 1458 aa9.13□□□□□ -0.95
CSDE1-203ENST00000358528 ZNF326Q5BKZ1 582 aaKnown RBP9.13□□□□□ -0.95
CSDE1-203ENST00000358528 SETD5Q9C0A6 1442 aa9.12□□□□□ -0.95
CSDE1-203ENST00000358528 ARAP1Q96P48 1450 aa9.12□□□□□ -0.95
CSDE1-203ENST00000358528 RRP7BPQ9NSQ0 103 aa9.11□□□□□ -0.95
CSDE1-203ENST00000358528 BCL11AQ9H165 835 aa9.11□□□□□ -0.95
CSDE1-203ENST00000358528 CUX2O14529 1486 aa9.1□□□□□ -0.95
CSDE1-203ENST00000358528 PPP1R15AO75807 674 aaPredicted RBP9.08□□□□□ -0.96
CSDE1-203ENST00000358528 MTUS2Q5JR59 1369 aa9.08□□□□□ -0.96
CSDE1-203ENST00000358528 CARMIL1Q5VZK9 1371 aa9.07□□□□□ -0.96
CSDE1-203ENST00000358528 MRS2Q9HD23 443 aa9.07□□□□□ -0.96
CSDE1-203ENST00000358528 NBR1Q14596 966 aa9.06□□□□□ -0.96
CSDE1-203ENST00000358528 B4GALNT3Q6L9W6 998 aa9.05□□□□□ -0.96
CSDE1-203ENST00000358528 RRBP1Q9P2E9 1410 aaKnown RBP9.04□□□□□ -0.96
CSDE1-203ENST00000358528 PHLDB1Q86UU1 1377 aa9.04□□□□□ -0.96
CSDE1-203ENST00000358528 CCER2I3L3R5 266 aa9.04□□□□□ -0.96
CSDE1-203ENST00000358528 FOXD1Q16676 465 aa9.04□□□□□ -0.96
CSDE1-203ENST00000358528 ARHGAP35Q9NRY4 1499 aa9.03□□□□□ -0.96
CSDE1-203ENST00000358528 SALL2Q9Y467 1007 aaPredicted RBP9.03□□□□□ -0.96
CSDE1-203ENST00000358528 PRXQ9BXM0 1461 aa9.02□□□□□ -0.97
CSDE1-203ENST00000358528 EIF4G2P78344 907 aaKnown RBP eCLIP9.02□□□□□ -0.97
CSDE1-203ENST00000358528 FHOD3Q2V2M9 1422 aa9.02□□□□□ -0.97
CSDE1-203ENST00000358528 WDR97A6NE52 1622 aa9.02□□□□□ -0.97
CSDE1-203ENST00000358528 UNC13AQ9UPW8 1703 aa9.01□□□□□ -0.97
CSDE1-203ENST00000358528 PEG3Q9GZU2 1588 aa9.01□□□□□ -0.97
CSDE1-203ENST00000358528 HSPA5P11021 654 aaKnown RBP9.01□□□□□ -0.97
CSDE1-203ENST00000358528 NPM2Q86SE8 214 aaKnown RBP9.01□□□□□ -0.97
CSDE1-203ENST00000358528 TOP2BQ02880 1626 aa8.99□□□□□ -0.97
CSDE1-203ENST00000358528 RTL5Q5HYW3 569 aaPredicted RBP8.99□□□□□ -0.97
CSDE1-203ENST00000358528 FHAD1B1AJZ9 1412 aa8.99□□□□□ -0.97
CSDE1-203ENST00000358528 ZNF777Q9ULD5 760 aaPredicted RBP8.99□□□□□ -0.97
CSDE1-203ENST00000358528 IGF1RP08069 1367 aa8.99□□□□□ -0.97
CSDE1-203ENST00000358528 BICRAQ9NZM4 1560 aa8.98□□□□□ -0.97
CSDE1-203ENST00000358528 TIMELESSQ9UNS1 1208 aa8.98□□□□□ -0.97
CSDE1-203ENST00000358528 CCDC136Q96JN2 1154 aa8.98□□□□□ -0.97
CSDE1-203ENST00000358528 ERICH3Q5RHP9 1530 aa8.97□□□□□ -0.97
CSDE1-203ENST00000358528 PPP4R2Q9NY27 417 aa8.97□□□□□ -0.97
CSDE1-203ENST00000358528 CUX1P39880 1505 aa8.96□□□□□ -0.97
CSDE1-203ENST00000358528 LRRC9Q6ZRR7 1453 aa8.96□□□□□ -0.98
CSDE1-203ENST00000358528 ANP32AP39687 249 aaKnown RBP8.95□□□□□ -0.98
CSDE1-203ENST00000358528 SLC4A1APQ9BWU0 796 aaKnown RBP8.94□□□□□ -0.98
CSDE1-203ENST00000358528 CCDC184Q52MB2 194 aa8.94□□□□□ -0.98
CSDE1-203ENST00000358528 MSH5O43196 834 aa8.94□□□□□ -0.98
CSDE1-203ENST00000358528 MAPKBP1O60336 1514 aa8.93□□□□□ -0.98
CSDE1-203ENST00000358528 L3MBTL2Q969R5 705 aa8.93□□□□□ -0.98
CSDE1-203ENST00000358528 KDM2AQ9Y2K7 1162 aa8.93□□□□□ -0.98
CSDE1-203ENST00000358528 TMC1Q8TDI8 760 aa8.92□□□□□ -0.98
CSDE1-203ENST00000358528 CCDC18Q5T9S5 1454 aa8.91□□□□□ -0.98
CSDE1-203ENST00000358528 SENP3Q9H4L4 574 aaPredicted RBP8.91□□□□□ -0.98
CSDE1-203ENST00000358528 TIAM1Q13009 1591 aa8.91□□□□□ -0.98
CSDE1-203ENST00000358528 WASHC2AQ641Q2 1341 aa8.9□□□□□ -0.98
CSDE1-203ENST00000358528 DEKP35659 375 aaKnown RBP8.9□□□□□ -0.98
CSDE1-203ENST00000358528 FBLN2P98095 1184 aa8.9□□□□□ -0.98
CSDE1-203ENST00000358528 TDRD9Q8NDG6 1382 aaKnown RBP8.9□□□□□ -0.98
CSDE1-203ENST00000358528 FGD5Q6ZNL6 1462 aa8.9□□□□□ -0.99
CSDE1-203ENST00000358528 ZBTB47Q9UFB7 747 aaPredicted RBP8.9□□□□□ -0.99
CSDE1-203ENST00000358528 MPHOSPH9Q99550 1183 aa8.89□□□□□ -0.99
CSDE1-203ENST00000358528 NOP58Q9Y2X3 529 aaKnown RBP8.88□□□□□ -0.99
CSDE1-203ENST00000358528 RAD54L2Q9Y4B4 1467 aa8.88□□□□□ -0.99
CSDE1-203ENST00000358528 PRKRIP1Q9H875 184 aaPredicted RBP8.88□□□□□ -0.99
CSDE1-203ENST00000358528 DAXXQ9UER7 740 aaPredicted RBP8.88□□□□□ -0.99
CSDE1-203ENST00000358528 CADPSQ9ULU8 1353 aa8.88□□□□□ -0.99
CSDE1-203ENST00000358528 FGD6Q6ZV73 1430 aa8.87□□□□□ -0.99
CSDE1-203ENST00000358528 FMN1Q68DA7 1419 aa8.86□□□□□ -0.99
CSDE1-203ENST00000358528 RTN4Q9NQC3 1192 aaKnown RBP8.85□□□□□ -0.99
CSDE1-203ENST00000358528 LAS1LQ9Y4W2 734 aaKnown RBP8.85□□□□□ -0.99
CSDE1-203ENST00000358528 CFTRP13569 1480 aa8.85□□□□□ -0.99
CSDE1-203ENST00000358528 FANCIQ9NVI1 1328 aa8.85□□□□□ -0.99
CSDE1-203ENST00000358528 BIVM-ERCC5R4GMW8 1640 aa8.85□□□□□ -0.99
CSDE1-203ENST00000358528 C11orf95C9JLR9 678 aaPredicted RBP8.84□□□□□ -0.99
CSDE1-203ENST00000358528 UACAQ9BZF9 1416 aa8.84□□□□□ -0.99
CSDE1-203ENST00000358528 NCAPD3P42695 1498 aa8.84□□□□□ -0.99
CSDE1-203ENST00000358528 PCF11O94913 1555 aaKnown RBP8.83□□□□□ -1
CSDE1-203ENST00000358528 PAK3O75914 559 aaPredicted RBP8.81□□□□□ -1
CSDE1-203ENST00000358528 RGL3Q3MIN7 710 aa8.81□□□□□ -1
CSDE1-203ENST00000358528 CARD11Q9BXL7 1154 aa8.81□□□□□ -1
CSDE1-203ENST00000358528 NBPF8Q3BBV2 869 aa8.8□□□□□ -1
CSDE1-203ENST00000358528 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.8□□□□□ -11e-10■■□□□ 13.5
CSDE1-203ENST00000358528 MYT1LQ9UL68 1186 aa8.8□□□□□ -1
CSDE1-203ENST00000358528 FANCD2Q9BXW9 1451 aa8.8□□□□□ -1
CSDE1-203ENST00000358528 KIF7Q2M1P5 1343 aa8.8□□□□□ -1
CSDE1-203ENST00000358528 ZBED9Q6R2W3 1325 aa8.8□□□□□ -1
CSDE1-203ENST00000358528 ZNF644Q9H582 1327 aaPredicted RBP8.8□□□□□ -1
CSDE1-203ENST00000358528 CASKIN1Q8WXD9 1431 aa8.8□□□□□ -1
CSDE1-203ENST00000358528 CFDP1Q9UEE9 299 aaPredicted RBP8.8□□□□□ -1
CSDE1-203ENST00000358528 CCDC7Q96M83 1385 aa8.79□□□□□ -1
CSDE1-203ENST00000358528 PTPRKQ15262 1439 aa8.79□□□□□ -1
CSDE1-203ENST00000358528 ERICH6BQ5W0A0 696 aa8.79□□□□□ -1
CSDE1-203ENST00000358528 NCOA2Q15596 1464 aa8.79□□□□□ -1
CSDE1-203ENST00000358528 MYOM3Q5VTT5 1437 aa8.78□□□□□ -1
CSDE1-203ENST00000358528 PKD2Q13563 968 aa8.78□□□□□ -1
CSDE1-203ENST00000358528 NUDCQ9Y266 331 aa8.78□□□□□ -1
CSDE1-203ENST00000358528 AKNAQ7Z591 1439 aa8.78□□□□□ -1
CSDE1-203ENST00000358528 CNTLNQ9NXG0 1405 aa8.78□□□□□ -1
CSDE1-203ENST00000358528 NAIPQ13075 1403 aa8.78□□□□□ -1
CSDE1-203ENST00000358528 AQRO60306 1485 aaKnown RBP eCLIP8.77□□□□□ -12e-7■■■■□ 24.7
CSDE1-203ENST00000358528 FYCO1Q9BQS8 1478 aa8.77□□□□□ -1.01
CSDE1-203ENST00000358528 HFM1A2PYH4 1435 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms