RNA–Protein interactions for RNA: ENST00000346162.10

SRPK1-201, Transcript of SRSF protein kinase 1, humanhuman

TSL 2

Gene SRPK1, Length 4,762 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPK1-201ENST00000346162 CHMP7Q8WUX9 453 aaPredicted RBP20.89■□□□□ 0.94
SRPK1-201ENST00000346162 RRP7BPQ9NSQ0 103 aa20.89■□□□□ 0.94
SRPK1-201ENST00000346162 FAM9BQ8IZU0 186 aa20.88■□□□□ 0.93
SRPK1-201ENST00000346162 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
SRPK1-201ENST00000346162 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.87■□□□□ 0.93
SRPK1-201ENST00000346162 TSPY4P0CV99 314 aa20.87■□□□□ 0.93
SRPK1-201ENST00000346162 TSPY10P0CW01 314 aa20.87■□□□□ 0.93
SRPK1-201ENST00000346162 NEFMP07197 916 aa20.84■□□□□ 0.93
SRPK1-201ENST00000346162 CCDC136Q96JN2 1154 aa20.84■□□□□ 0.93
SRPK1-201ENST00000346162 NOP58Q9Y2X3 529 aaKnown RBP20.81■□□□□ 0.92
SRPK1-201ENST00000346162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.79■□□□□ 0.924e-8■■□□□ 12.9
SRPK1-201ENST00000346162 WIZO95785 1651 aa20.78■□□□□ 0.92
SRPK1-201ENST00000346162 EIF4G2P78344 907 aaKnown RBP eCLIP20.78■□□□□ 0.92
SRPK1-201ENST00000346162 ARXQ96QS3 562 aa20.77■□□□□ 0.92
SRPK1-201ENST00000346162 ERICH6BQ5W0A0 696 aa20.76■□□□□ 0.91
SRPK1-201ENST00000346162 VPS8Q8N3P4 1428 aa20.76■□□□□ 0.91
SRPK1-201ENST00000346162 MRS2Q9HD23 443 aa20.76■□□□□ 0.91
SRPK1-201ENST00000346162 CARMIL1Q5VZK9 1371 aa20.75■□□□□ 0.91
SRPK1-201ENST00000346162 KDM2AQ9Y2K7 1162 aa20.75■□□□□ 0.91
SRPK1-201ENST00000346162 CCNB3Q8WWL7 1395 aa20.74■□□□□ 0.91
SRPK1-201ENST00000346162 CANXP27824 592 aaKnown RBP20.74■□□□□ 0.91
SRPK1-201ENST00000346162 CUX2O14529 1486 aa20.74■□□□□ 0.91
SRPK1-201ENST00000346162 TMC1Q8TDI8 760 aa20.73■□□□□ 0.91
SRPK1-201ENST00000346162 TOP2AP11388 1531 aaKnown RBP20.71■□□□□ 0.91
SRPK1-201ENST00000346162 CHGAP10645 457 aaKnown RBP20.71■□□□□ 0.91
SRPK1-201ENST00000346162 SIN3AQ96ST3 1273 aa20.71■□□□□ 0.91
SRPK1-201ENST00000346162 PLEKHD1A6NEE1 506 aa20.69■□□□□ 0.9
SRPK1-201ENST00000346162 SALL2Q9Y467 1007 aaPredicted RBP20.68■□□□□ 0.9
SRPK1-201ENST00000346162 FHAD1B1AJZ9 1412 aa20.68■□□□□ 0.9
SRPK1-201ENST00000346162 SMARCA2P51531 1590 aa20.66■□□□□ 0.9
SRPK1-201ENST00000346162 ANP32BQ92688 251 aaKnown RBP20.66■□□□□ 0.9
SRPK1-201ENST00000346162 NPM1P06748 294 aaKnown RBP eCLIP20.66■□□□□ 0.9
SRPK1-201ENST00000346162 KANK4Q5T7N3 995 aaPredicted RBP20.65■□□□□ 0.9
SRPK1-201ENST00000346162 CFDP1Q9UEE9 299 aaPredicted RBP20.64■□□□□ 0.89
SRPK1-201ENST00000346162 LAS1LQ9Y4W2 734 aaKnown RBP20.64■□□□□ 0.89
SRPK1-201ENST00000346162 PPM1GO15355 546 aaPredicted RBP20.63■□□□□ 0.89
SRPK1-201ENST00000346162 NAP1L5Q96NT1 182 aaPredicted RBP20.62■□□□□ 0.89
SRPK1-201ENST00000346162 KCNH8Q96L42 1107 aa20.55■□□□□ 0.88
SRPK1-201ENST00000346162 PPP4R2Q9NY27 417 aa20.54■□□□□ 0.88
SRPK1-201ENST00000346162 ANO8Q9HCE9 1232 aaPredicted RBP20.53■□□□□ 0.88
SRPK1-201ENST00000346162 RGL3Q3MIN7 710 aa20.5■□□□□ 0.87
SRPK1-201ENST00000346162 DDRGK1Q96HY6 314 aa20.5■□□□□ 0.87
SRPK1-201ENST00000346162 STAG3Q9UJ98 1225 aa20.5■□□□□ 0.87
SRPK1-201ENST00000346162 TIMELESSQ9UNS1 1208 aa20.5■□□□□ 0.87
SRPK1-201ENST00000346162 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
SRPK1-201ENST00000346162 SMARCA4P51532 1647 aa20.49■□□□□ 0.87
SRPK1-201ENST00000346162 SETD5Q9C0A6 1442 aa20.48■□□□□ 0.87
SRPK1-201ENST00000346162 ESF1Q9H501 851 aaKnown RBP20.48■□□□□ 0.87
SRPK1-201ENST00000346162 WDR43Q15061 677 aaKnown RBP eCLIP20.47■□□□□ 0.87
SRPK1-201ENST00000346162 RUSC2Q8N2Y8 1516 aa20.46■□□□□ 0.87
SRPK1-201ENST00000346162 B4GALNT3Q6L9W6 998 aa20.45■□□□□ 0.86
SRPK1-201ENST00000346162 RAPGEF2Q9Y4G8 1499 aa20.45■□□□□ 0.86
SRPK1-201ENST00000346162 TRIM44Q96DX7 344 aaPredicted RBP20.44■□□□□ 0.86
SRPK1-201ENST00000346162 SLC24A1O60721 1099 aa20.43■□□□□ 0.86
SRPK1-201ENST00000346162 TNNT2P45379 298 aaPredicted RBP20.43■□□□□ 0.86
SRPK1-201ENST00000346162 UPF2Q9HAU5 1272 aaKnown RBP20.42■□□□□ 0.86
SRPK1-201ENST00000346162 CARD11Q9BXL7 1154 aa20.42■□□□□ 0.86
SRPK1-201ENST00000346162 EIF4G1Q04637 1599 aaKnown RBP20.41■□□□□ 0.86
SRPK1-201ENST00000346162 TDRD9Q8NDG6 1382 aaKnown RBP20.41■□□□□ 0.86
SRPK1-201ENST00000346162 ARHGAP35Q9NRY4 1499 aa20.4■□□□□ 0.86
SRPK1-201ENST00000346162 RAB3GAP2Q9H2M9 1393 aa20.39■□□□□ 0.86
SRPK1-201ENST00000346162 CADPSQ9ULU8 1353 aa20.39■□□□□ 0.86
SRPK1-201ENST00000346162 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.39■□□□□ 0.85
SRPK1-201ENST00000346162 ERCC6Q03468 1493 aa20.36■□□□□ 0.85
SRPK1-201ENST00000346162 VSIG10Q8N0Z9 540 aa20.36■□□□□ 0.85
SRPK1-201ENST00000346162 HSP90AA1P07900 732 aaKnown RBP20.36■□□□□ 0.85
SRPK1-201ENST00000346162 SENP3-EIF4A1A0A087X0R7 540 aa20.34■□□□□ 0.85
SRPK1-201ENST00000346162 FMN1Q68DA7 1419 aa20.33■□□□□ 0.85
SRPK1-201ENST00000346162 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
SRPK1-201ENST00000346162 ARID4BQ4LE39 1312 aaPredicted RBP20.26■□□□□ 0.83
SRPK1-201ENST00000346162 CCER2I3L3R5 266 aa20.26■□□□□ 0.83
SRPK1-201ENST00000346162 FANCIQ9NVI1 1328 aa20.26■□□□□ 0.83
SRPK1-201ENST00000346162 FHOD3Q2V2M9 1422 aa20.25■□□□□ 0.83
SRPK1-201ENST00000346162 CDCA8Q53HL2 280 aa20.25■□□□□ 0.83
SRPK1-201ENST00000346162 KNSTRNQ9Y448 316 aa20.25■□□□□ 0.83
SRPK1-201ENST00000346162 HSPA5P11021 654 aaKnown RBP20.24■□□□□ 0.83
SRPK1-201ENST00000346162 RSPH6AQ9H0K4 717 aa20.24■□□□□ 0.83
SRPK1-201ENST00000346162 PPP1R15AO75807 674 aaPredicted RBP20.23■□□□□ 0.83
SRPK1-201ENST00000346162 FOXD1Q16676 465 aa20.23■□□□□ 0.83
SRPK1-201ENST00000346162 PKNOX2Q96KN3 472 aa20.23■□□□□ 0.83
SRPK1-201ENST00000346162 BECN1Q14457 450 aa20.23■□□□□ 0.83
SRPK1-201ENST00000346162 DCAF11Q8TEB1 546 aa20.22■□□□□ 0.83
SRPK1-201ENST00000346162 PLPPR3Q6T4P5 718 aa20.22■□□□□ 0.83
SRPK1-201ENST00000346162 IPO9Q96P70 1041 aaKnown RBP20.22■□□□□ 0.83
SRPK1-201ENST00000346162 PNNQ9H307 717 aaKnown RBP20.22■□□□□ 0.83
SRPK1-201ENST00000346162 SENP3Q9H4L4 574 aaPredicted RBP20.2■□□□□ 0.82
SRPK1-201ENST00000346162 MPHOSPH9Q99550 1183 aa20.19■□□□□ 0.82
SRPK1-201ENST00000346162 DHX57Q6P158 1386 aaKnown RBP20.18■□□□□ 0.82
SRPK1-201ENST00000346162 PKD2Q13563 968 aa20.18■□□□□ 0.82
SRPK1-201ENST00000346162 HSP90AA2PQ14568 343 aaPredicted RBP20.18■□□□□ 0.82
SRPK1-201ENST00000346162 CDK11BP21127 795 aaKnown RBP20.17■□□□□ 0.82
SRPK1-201ENST00000346162 L1TD1Q5T7N2 865 aaKnown RBP20.13■□□□□ 0.81
SRPK1-201ENST00000346162 CARMIL2Q6F5E8 1435 aa20.13■□□□□ 0.81
SRPK1-201ENST00000346162 CC2D1BQ5T0F9 858 aaKnown RBP20.1■□□□□ 0.81
SRPK1-201ENST00000346162 NCLP19338 710 aaKnown RBP20.09■□□□□ 0.81
SRPK1-201ENST00000346162 IGF1RP08069 1367 aa20.09■□□□□ 0.81
SRPK1-201ENST00000346162 FANCD2Q9BXW9 1451 aa20.09■□□□□ 0.81
SRPK1-201ENST00000346162 USP35Q9P2H5 1018 aa20.08■□□□□ 0.81
SRPK1-201ENST00000346162 CFAP53Q96M91 514 aa20.08■□□□□ 0.8
SRPK1-201ENST00000346162 L3MBTL2Q969R5 705 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms