RNA–Protein interactions for RNA: ENST00000346162.10

SRPK1-201, Transcript of SRSF protein kinase 1, humanhuman

TSL 2

Gene SRPK1, Length 4,762 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPK1-201ENST00000346162 NISCHQ9Y2I1 1504 aa27.2■■□□□ 1.95
SRPK1-201ENST00000346162 DCAF8L2P0C7V8 631 aa26.7■■□□□ 1.86
SRPK1-201ENST00000346162 SUPT5HO00267 1087 aaKnown RBP25.77■■□□□ 1.72
SRPK1-201ENST00000346162 SHROOM4Q9ULL8 1493 aa25.54■■□□□ 1.68
SRPK1-201ENST00000346162 PELP1Q8IZL8 1130 aaKnown RBP25.36■■□□□ 1.65
SRPK1-201ENST00000346162 MYT1Q01538 1121 aa25■■□□□ 1.59
SRPK1-201ENST00000346162 EHMT2Q96KQ7 1210 aa24.51■■□□□ 1.51
SRPK1-201ENST00000346162 PCGF6Q9BYE7 350 aa24.46■■□□□ 1.51
SRPK1-201ENST00000346162 FAM9AQ8IZU1 332 aaPredicted RBP24.17■■□□□ 1.46
SRPK1-201ENST00000346162 CENPBP07199 599 aaPredicted RBP24.1■■□□□ 1.45
SRPK1-201ENST00000346162 HRCP23327 699 aa24.09■■□□□ 1.45
SRPK1-201ENST00000346162 TRIM41Q8WV44 630 aa23.9■■□□□ 1.42
SRPK1-201ENST00000346162 ZEB1P37275 1124 aaPredicted RBP23.84■■□□□ 1.41
SRPK1-201ENST00000346162 APLP2Q06481 763 aa23.83■■□□□ 1.41
SRPK1-201ENST00000346162 TTBK1Q5TCY1 1321 aaPredicted RBP23.68■■□□□ 1.38
SRPK1-201ENST00000346162 PPARGC1BQ86YN6 1023 aaKnown RBP23.63■■□□□ 1.37
SRPK1-201ENST00000346162 ERICH6Q7L0X2 663 aa23.53■■□□□ 1.36
SRPK1-201ENST00000346162 CHIC1Q5VXU3 224 aa23.48■■□□□ 1.35
SRPK1-201ENST00000346162 RANGAP1P46060 587 aaPredicted RBP23.41■■□□□ 1.34
SRPK1-201ENST00000346162 YTHDC1Q96MU7 727 aaKnown RBP23.39■■□□□ 1.33
SRPK1-201ENST00000346162 UBTFP17480 764 aaKnown RBP23.38■■□□□ 1.33
SRPK1-201ENST00000346162 CCER1Q8TC90 406 aaPredicted RBP23.35■■□□□ 1.33
SRPK1-201ENST00000346162 LOC105371045A0A1W2PR82 267 aa23.27■■□□□ 1.31
SRPK1-201ENST00000346162 TRIM26Q12899 539 aaPredicted RBP23.2■■□□□ 1.3
SRPK1-201ENST00000346162 ATP1B4Q9UN42 357 aaPredicted RBP23.02■■□□□ 1.28
SRPK1-201ENST00000346162 GTF3C3Q9Y5Q9 886 aa23.02■■□□□ 1.28
SRPK1-201ENST00000346162 NEFLP07196 543 aa22.89■■□□□ 1.25
SRPK1-201ENST00000346162 ABCC9O60706 1549 aa22.87■■□□□ 1.25
SRPK1-201ENST00000346162 ACIN1Q9UKV3 1341 aaKnown RBP22.76■■□□□ 1.23
SRPK1-201ENST00000346162 DIEXFQ68CQ4 756 aaKnown RBP22.72■■□□□ 1.23
SRPK1-201ENST00000346162 SCAF1Q9H7N4 1312 aaKnown RBP22.7■■□□□ 1.22
SRPK1-201ENST00000346162 ZCCHC6Q5VYS8 1495 aaKnown RBP22.63■■□□□ 1.21
SRPK1-201ENST00000346162 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.211e-9■□□□□ 9.3
SRPK1-201ENST00000346162 HNRNPUL2Q1KMD3 747 aaKnown RBP22.58■■□□□ 1.21
SRPK1-201ENST00000346162 ITGAEP38570 1179 aa22.52■■□□□ 1.2
SRPK1-201ENST00000346162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.48■■□□□ 1.19
SRPK1-201ENST00000346162 NEUROD1Q13562 356 aa22.35■■□□□ 1.17
SRPK1-201ENST00000346162 CCDC180Q9P1Z9 1646 aa22.29■■□□□ 1.16
SRPK1-201ENST00000346162 RTL5Q5HYW3 569 aaPredicted RBP22.26■■□□□ 1.15
SRPK1-201ENST00000346162 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
SRPK1-201ENST00000346162 BCANQ96GW7 911 aa22.19■■□□□ 1.14
SRPK1-201ENST00000346162 CSRNP3Q8WYN3 585 aa22.15■■□□□ 1.14
SRPK1-201ENST00000346162 BCL11AQ9H165 835 aa22.06■■□□□ 1.12
SRPK1-201ENST00000346162 FAM50AQ14320 339 aaKnown RBP22.03■■□□□ 1.12
SRPK1-201ENST00000346162 DCAF1Q9Y4B6 1507 aa21.98■■□□□ 1.11
SRPK1-201ENST00000346162 DAXXQ9UER7 740 aaPredicted RBP21.97■■□□□ 1.11
SRPK1-201ENST00000346162 ZNF316A6NFI3 1004 aaPredicted RBP21.95■■□□□ 1.1
SRPK1-201ENST00000346162 ANP32EQ9BTT0 268 aa21.94■■□□□ 1.1
SRPK1-201ENST00000346162 POLR3GLQ9BT43 218 aa21.94■■□□□ 1.1
SRPK1-201ENST00000346162 EIF5BO60841 1220 aaKnown RBP21.9■■□□□ 1.1
SRPK1-201ENST00000346162 CDK11AQ9UQ88 783 aaPredicted RBP21.86■■□□□ 1.09
SRPK1-201ENST00000346162 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.08
SRPK1-201ENST00000346162 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
SRPK1-201ENST00000346162 CLSPNQ9HAW4 1339 aa21.81■■□□□ 1.08
SRPK1-201ENST00000346162 MYT1LQ9UL68 1186 aa21.81■■□□□ 1.08
SRPK1-201ENST00000346162 CNGB1Q14028 1251 aaPredicted RBP21.79■■□□□ 1.08
SRPK1-201ENST00000346162 TRIM52Q96A61 297 aa21.76■■□□□ 1.07
SRPK1-201ENST00000346162 P3H3Q8IVL6 736 aa21.74■■□□□ 1.07
SRPK1-201ENST00000346162 FKBP8Q14318 412 aa21.61■■□□□ 1.05
SRPK1-201ENST00000346162 RB1CC1Q8TDY2 1594 aa21.57■■□□□ 1.04
SRPK1-201ENST00000346162 FBLN2P98095 1184 aa21.54■■□□□ 1.04
SRPK1-201ENST00000346162 NACADO15069 1562 aa21.54■■□□□ 1.04
SRPK1-201ENST00000346162 GLIPR1L2Q4G1C9 344 aa21.54■■□□□ 1.04
SRPK1-201ENST00000346162 ANP32CO43423 234 aa21.52■■□□□ 1.04
SRPK1-201ENST00000346162 ARID3CA6NKF2 412 aa21.48■■□□□ 1.03
SRPK1-201ENST00000346162 NBR1Q14596 966 aa21.48■■□□□ 1.03
SRPK1-201ENST00000346162 ANP32AP39687 249 aaKnown RBP21.45■■□□□ 1.02
SRPK1-201ENST00000346162 MIER1Q8N108 512 aa21.45■■□□□ 1.02
SRPK1-201ENST00000346162 ZNF326Q5BKZ1 582 aaKnown RBP21.44■■□□□ 1.02
SRPK1-201ENST00000346162 CLIP1P30622 1438 aa21.41■■□□□ 1.02
SRPK1-201ENST00000346162 EEA1Q15075 1411 aa21.4■■□□□ 1.02
SRPK1-201ENST00000346162 CECR2Q9BXF3 1484 aa21.38■■□□□ 1.01
SRPK1-201ENST00000346162 CEP162Q5TB80 1403 aa21.36■■□□□ 1.01
SRPK1-201ENST00000346162 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1.01
SRPK1-201ENST00000346162 SLC4A1APQ9BWU0 796 aaKnown RBP21.31■■□□□ 1
SRPK1-201ENST00000346162 GOLGA3Q08378 1498 aa21.3■■□□□ 1
SRPK1-201ENST00000346162 BAZ1AQ9NRL2 1556 aaPredicted RBP21.27■■□□□ 1
SRPK1-201ENST00000346162 ZNF777Q9ULD5 760 aaPredicted RBP21.27■■□□□ 1
SRPK1-201ENST00000346162 TNIKQ9UKE5 1360 aa21.25■□□□□ 0.99
SRPK1-201ENST00000346162 TONSLQ96HA7 1378 aa21.23■□□□□ 0.99
SRPK1-201ENST00000346162 NPM2Q86SE8 214 aaKnown RBP21.23■□□□□ 0.99
SRPK1-201ENST00000346162 BAZ1BQ9UIG0 1483 aaKnown RBP21.21■□□□□ 0.99
SRPK1-201ENST00000346162 SUPT16HQ9Y5B9 1047 aaKnown RBP21.2■□□□□ 0.98
SRPK1-201ENST00000346162 ZBTB47Q9UFB7 747 aaPredicted RBP21.18■□□□□ 0.98
SRPK1-201ENST00000346162 RTN4Q9NQC3 1192 aaKnown RBP21.17■□□□□ 0.98
SRPK1-201ENST00000346162 DDX10Q13206 875 aaKnown RBP21.17■□□□□ 0.98
SRPK1-201ENST00000346162 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
SRPK1-201ENST00000346162 CHIC2Q9UKJ5 165 aa21.12■□□□□ 0.97
SRPK1-201ENST00000346162 MROH2BQ7Z745 1585 aa21.12■□□□□ 0.97
SRPK1-201ENST00000346162 MTUS2Q5JR59 1369 aa21.11■□□□□ 0.97
SRPK1-201ENST00000346162 DEKP35659 375 aaKnown RBP21.08■□□□□ 0.96
SRPK1-201ENST00000346162 KIF27Q86VH2 1401 aa21.06■□□□□ 0.96
SRPK1-201ENST00000346162 SOGA1O94964 1423 aa21.05■□□□□ 0.96
SRPK1-201ENST00000346162 TSHZ2Q9NRE2 1034 aa21.02■□□□□ 0.96
SRPK1-201ENST00000346162 RBM19Q9Y4C8 960 aaKnown RBP20.99■□□□□ 0.95
SRPK1-201ENST00000346162 PRKCSHP14314 528 aaPredicted RBP20.98■□□□□ 0.95
SRPK1-201ENST00000346162 HNRNPUQ00839 825 aaKnown RBP eCLIP20.98■□□□□ 0.95
SRPK1-201ENST00000346162 CCDC88BA6NC98 1476 aa20.96■□□□□ 0.95
SRPK1-201ENST00000346162 IRX6P78412 446 aaPredicted RBP20.96■□□□□ 0.95
SRPK1-201ENST00000346162 HIRIP3Q9BW71 556 aaPredicted RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms