RNA–Protein interactions for RNA: ENST00000338635.10

XRCC4-202, Transcript of X-ray repair cross complementing 4, humanhuman

APPRIS P4 TSL 2 BASIC

Gene XRCC4, Length 1,579 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-202ENST00000338635 SLC39A7Q92504 469 aa10.84□□□□□ -0.67
XRCC4-202ENST00000338635 C7P10643 843 aa10.83□□□□□ -0.68
XRCC4-202ENST00000338635 ASTLQ6HA08 431 aaPredicted RBP10.81□□□□□ -0.68
XRCC4-202ENST00000338635 ATMINO43313 823 aaPredicted RBP10.77□□□□□ -0.68
XRCC4-202ENST00000338635 SCUBE2Q9NQ36 999 aa10.77□□□□□ -0.68
XRCC4-202ENST00000338635 STAG3Q9UJ98 1225 aa10.75□□□□□ -0.69
XRCC4-202ENST00000338635 SPDYE4A6NLX3 237 aa10.73□□□□□ -0.69
XRCC4-202ENST00000338635 MS4A3Q96HJ5 214 aa10.73□□□□□ -0.69
XRCC4-202ENST00000338635 CDAN1Q8IWY9 1227 aa10.71□□□□□ -0.69
XRCC4-202ENST00000338635 NPM1P06748 294 aaKnown RBP eCLIP10.7□□□□□ -0.7
XRCC4-202ENST00000338635 ATN1P54259 1190 aaPredicted RBP10.62□□□□□ -0.71
XRCC4-202ENST00000338635 MNX1P50219 401 aaPredicted RBP10.6□□□□□ -0.71
XRCC4-202ENST00000338635 POTEFA5A3E0 1075 aa10.58□□□□□ -0.72
XRCC4-202ENST00000338635 MMRN1Q13201 1228 aa10.52□□□□□ -0.73
XRCC4-202ENST00000338635 BMP2KQ9NSY1 1161 aaPredicted RBP10.49□□□□□ -0.73
XRCC4-202ENST00000338635 TSPYL2Q9H2G4 693 aaPredicted RBP10.48□□□□□ -0.73
XRCC4-202ENST00000338635 ST18O60284 1047 aa10.46□□□□□ -0.74
XRCC4-202ENST00000338635 SPNS2Q8IVW8 549 aa10.45□□□□□ -0.74
XRCC4-202ENST00000338635 SEC24BO95487 1268 aa10.44□□□□□ -0.74
XRCC4-202ENST00000338635 CCDC61Q9Y6R9 512 aa10.44□□□□□ -0.74
XRCC4-202ENST00000338635 KIF12Q96FN5 646 aa10.43□□□□□ -0.74
XRCC4-202ENST00000338635 COLQQ9Y215 455 aaPredicted RBP10.43□□□□□ -0.74
XRCC4-202ENST00000338635 PROM2Q8N271 834 aa10.43□□□□□ -0.74
XRCC4-202ENST00000338635 TRPC6Q9Y210 931 aa10.43□□□□□ -0.74
XRCC4-202ENST00000338635 TIE1P35590 1138 aa10.42□□□□□ -0.74
XRCC4-202ENST00000338635 SLAIN1Q8ND83 568 aa10.39□□□□□ -0.75
XRCC4-202ENST00000338635 TTLL13PA6NNM8 815 aa10.33□□□□□ -0.76
XRCC4-202ENST00000338635 MAP3K13O43283 966 aa10.33□□□□□ -0.76
XRCC4-202ENST00000338635 IER5LQ5T953 404 aa10.31□□□□□ -0.76
XRCC4-202ENST00000338635 TMEM121BQ9BXQ6 578 aaPredicted RBP10.29□□□□□ -0.76
XRCC4-202ENST00000338635 TRIM35Q9UPQ4 493 aa10.27□□□□□ -0.76
XRCC4-202ENST00000338635 MIER1Q8N108 512 aa10.26□□□□□ -0.77
XRCC4-202ENST00000338635 PLEKHG5O94827 1062 aa10.24□□□□□ -0.77
XRCC4-202ENST00000338635 SNPHO15079 494 aa10.2□□□□□ -0.78
XRCC4-202ENST00000338635 MARVELD3Q96A59 401 aa10.2□□□□□ -0.78
XRCC4-202ENST00000338635 PLCG2P16885 1265 aa10.18□□□□□ -0.78
XRCC4-202ENST00000338635 PLCD3Q8N3E9 789 aa10.17□□□□□ -0.78
XRCC4-202ENST00000338635 FKBP8Q14318 412 aa10.15□□□□□ -0.78
XRCC4-202ENST00000338635 RASEFQ8IZ41 740 aa10.15□□□□□ -0.78
XRCC4-202ENST00000338635 SGIP1Q9BQI5 828 aa10.15□□□□□ -0.78
XRCC4-202ENST00000338635 PCDHB13Q9Y5F0 798 aa10.13□□□□□ -0.79
XRCC4-202ENST00000338635 IRX5P78411 483 aaPredicted RBP10.09□□□□□ -0.79
XRCC4-202ENST00000338635 KRTAP3-3Q9BYR6 98 aa10.09□□□□□ -0.79
XRCC4-202ENST00000338635 KRTAP3-2Q9BYR7 98 aa10.09□□□□□ -0.79
XRCC4-202ENST00000338635 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.09□□□□□ -0.79
XRCC4-202ENST00000338635 TMEM106CQ9BVX2 250 aa10.08□□□□□ -0.8
XRCC4-202ENST00000338635 EMP3P54852 163 aa10.07□□□□□ -0.8
XRCC4-202ENST00000338635 ZBTB47Q9UFB7 747 aaPredicted RBP10.07□□□□□ -0.8
XRCC4-202ENST00000338635 NUBP1P53384 320 aa10.04□□□□□ -0.8
XRCC4-202ENST00000338635 IFNL1Q8IU54 200 aa10.04□□□□□ -0.8
XRCC4-202ENST00000338635 OCEL1Q9H607 264 aa10.04□□□□□ -0.8
XRCC4-202ENST00000338635 HS3ST6Q96QI5 342 aa10.03□□□□□ -0.8
XRCC4-202ENST00000338635 POTEB3A0JP26 581 aa10.01□□□□□ -0.81
XRCC4-202ENST00000338635 POTEBQ6S5H4 581 aa10.01□□□□□ -0.81
XRCC4-202ENST00000338635 FAM205CA6NFA0 338 aa9.99□□□□□ -0.81
XRCC4-202ENST00000338635 FAM212AQ96EL1 285 aa9.97□□□□□ -0.81
XRCC4-202ENST00000338635 FBXO3Q9UK99 471 aa9.96□□□□□ -0.82
XRCC4-202ENST00000338635 DCAF8Q5TAQ9 597 aa9.91□□□□□ -0.82
XRCC4-202ENST00000338635 C3orf67Q6ZVT6 689 aa9.89□□□□□ -0.83
XRCC4-202ENST00000338635 RNF166Q96A37 237 aaPredicted RBP9.88□□□□□ -0.83
XRCC4-202ENST00000338635 PYGBP11216 843 aa9.85□□□□□ -0.83
XRCC4-202ENST00000338635 KLHL34Q8N239 644 aa9.84□□□□□ -0.83
XRCC4-202ENST00000338635 L3MBTL3Q96JM7 780 aaPredicted RBP9.84□□□□□ -0.83
XRCC4-202ENST00000338635 VASPP50552 380 aaPredicted RBP9.83□□□□□ -0.84
XRCC4-202ENST00000338635 PDCD7Q8N8D1 485 aaKnown RBP9.82□□□□□ -0.84
XRCC4-202ENST00000338635 PCDHB8Q9UN66 801 aa9.79□□□□□ -0.84
XRCC4-202ENST00000338635 MYT1LQ9UL68 1186 aa9.78□□□□□ -0.84
XRCC4-202ENST00000338635 GSE1Q14687 1217 aa9.76□□□□□ -0.85
XRCC4-202ENST00000338635 ERBB3P21860 1342 aa9.74□□□□□ -0.85
XRCC4-202ENST00000338635 HOXB1P14653 301 aaPredicted RBP9.71□□□□□ -0.85
XRCC4-202ENST00000338635 MKRN3Q13064 507 aaKnown RBP9.71□□□□□ -0.85
XRCC4-202ENST00000338635 HOXB3P14651 431 aaPredicted RBP9.71□□□□□ -0.86
XRCC4-202ENST00000338635 GOLGA2Q08379 1002 aa9.7□□□□□ -0.86
XRCC4-202ENST00000338635 CHRM1P11229 460 aaPredicted RBP9.69□□□□□ -0.86
XRCC4-202ENST00000338635 ZNF467Q7Z7K2 595 aaPredicted RBP9.69□□□□□ -0.86
XRCC4-202ENST00000338635 ZNF710Q8N1W2 664 aa9.68□□□□□ -0.86
XRCC4-202ENST00000338635 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.68□□□□□ -0.86
XRCC4-202ENST00000338635 IFNLR1Q8IU57 520 aaPredicted RBP9.66□□□□□ -0.86
XRCC4-202ENST00000338635 SPOCK2Q92563 424 aa9.65□□□□□ -0.86
XRCC4-202ENST00000338635 VARS2Q5ST30 1063 aaKnown RBP9.63□□□□□ -0.87
XRCC4-202ENST00000338635 PTGER2P43116 358 aa9.63□□□□□ -0.87
XRCC4-202ENST00000338635 PSEN1P49768 467 aa9.63□□□□□ -0.87
XRCC4-202ENST00000338635 CIZ1Q9ULV3 898 aaPredicted RBP9.63□□□□□ -0.87
XRCC4-202ENST00000338635 DOK7Q18PE1 504 aa9.62□□□□□ -0.87
XRCC4-202ENST00000338635 ZNF687Q8N1G0 1237 aa9.58□□□□□ -0.88
XRCC4-202ENST00000338635 G3V3G9 751 aa9.58□□□□□ -0.88
XRCC4-202ENST00000338635 DPY19L2Q6NUT2 758 aa9.58□□□□□ -0.88
XRCC4-202ENST00000338635 ILDR1Q86SU0 546 aaPredicted RBP9.57□□□□□ -0.88
XRCC4-202ENST00000338635 PDAP1Q13442 181 aaKnown RBP9.56□□□□□ -0.88
XRCC4-202ENST00000338635 RIMBP2O15034 1052 aa9.55□□□□□ -0.88
XRCC4-202ENST00000338635 BOLA1Q9Y3E2 137 aa9.55□□□□□ -0.88
XRCC4-202ENST00000338635 ANKRD13DQ6ZTN6 518 aa9.5□□□□□ -0.89
XRCC4-202ENST00000338635 CABP2Q9NPB3 220 aa9.5□□□□□ -0.89
XRCC4-202ENST00000338635 PLA2G2EQ9NZK7 142 aa9.5□□□□□ -0.89
XRCC4-202ENST00000338635 ZSWIM6Q9HCJ5 1215 aa9.47□□□□□ -0.89
XRCC4-202ENST00000338635 TRIM41Q8WV44 630 aa9.45□□□□□ -0.9
XRCC4-202ENST00000338635 GPR153Q6NV75 609 aa9.42□□□□□ -0.9
XRCC4-202ENST00000338635 LSM11P83369 360 aaKnown RBP eCLIP9.39□□□□□ -0.911e-11■■■■■ 50.1
XRCC4-202ENST00000338635 EFCAB3Q8N7B9 438 aa9.39□□□□□ -0.91
XRCC4-202ENST00000338635 HCSTQ9UBK5 93 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms