RNA–Protein interactions for RNA: ENST00000338635.10

XRCC4-202, Transcript of X-ray repair cross complementing 4, humanhuman

APPRIS P4 TSL 2 BASIC

Gene XRCC4, Length 1,579 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-202ENST00000338635 AEBP2Q6ZN18 517 aaPredicted RBP22.42■■□□□ 1.18
XRCC4-202ENST00000338635 CHIC1Q5VXU3 224 aa20.97■□□□□ 0.95
XRCC4-202ENST00000338635 SENP3Q9H4L4 574 aaPredicted RBP19.27■□□□□ 0.67
XRCC4-202ENST00000338635 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
XRCC4-202ENST00000338635 FOXD1Q16676 465 aa18.04■□□□□ 0.48
XRCC4-202ENST00000338635 POTEDQ86YR6 584 aa18.04■□□□□ 0.48
XRCC4-202ENST00000338635 MSH5O43196 834 aa17.19■□□□□ 0.34
XRCC4-202ENST00000338635 PIAS4Q8N2W9 510 aaPredicted RBP16.69■□□□□ 0.26
XRCC4-202ENST00000338635 PPP6R1Q9UPN7 881 aa16.29■□□□□ 0.2
XRCC4-202ENST00000338635 ADRA2BP18089 450 aa16.21■□□□□ 0.18
XRCC4-202ENST00000338635 PLPPR3Q6T4P5 718 aa16.11■□□□□ 0.17
XRCC4-202ENST00000338635 CACNB1Q02641 598 aaPredicted RBP15.22■□□□□ 0.03
XRCC4-202ENST00000338635 DMRT2Q9Y5R5 561 aa15.15■□□□□ 0.02
XRCC4-202ENST00000338635 MAPK8IP2Q13387 824 aaPredicted RBP15.11■□□□□ 0.01
XRCC4-202ENST00000338635 SCAF1Q9H7N4 1312 aaKnown RBP14.85□□□□□ -0.03
XRCC4-202ENST00000338635 DCAF8L1A6NGE4 600 aa14.6□□□□□ -0.07
XRCC4-202ENST00000338635 RNF39Q9H2S5 420 aa14.58□□□□□ -0.08
XRCC4-202ENST00000338635 C1QBPQ07021 282 aaKnown RBP14.34□□□□□ -0.11
XRCC4-202ENST00000338635 HOXD11P31277 338 aaPredicted RBP14.3□□□□□ -0.12
XRCC4-202ENST00000338635 PPP4R3CPQ6ZMV5 832 aa14.03□□□□□ -0.16
XRCC4-202ENST00000338635 POTEHQ6S545 545 aa14□□□□□ -0.17
XRCC4-202ENST00000338635 RNF216Q9NWF9 866 aaPredicted RBP14□□□□□ -0.17
XRCC4-202ENST00000338635 DNAJC5BQ9UF47 199 aa13.96□□□□□ -0.18
XRCC4-202ENST00000338635 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
XRCC4-202ENST00000338635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.65□□□□□ -0.22
XRCC4-202ENST00000338635 DSG3P32926 999 aa13.41□□□□□ -0.26
XRCC4-202ENST00000338635 CAPN15O75808 1086 aa13.32□□□□□ -0.28
XRCC4-202ENST00000338635 SPINK5Q9NQ38 1064 aaPredicted RBP13.29□□□□□ -0.28
XRCC4-202ENST00000338635 NCBP3Q53F19 620 aaKnown RBP13.28□□□□□ -0.28
XRCC4-202ENST00000338635 U3KPZ7 1027 aaPredicted RBP13.25□□□□□ -0.29
XRCC4-202ENST00000338635 NPM3O75607 178 aaKnown RBP13.07□□□□□ -0.32
XRCC4-202ENST00000338635 ABCB7O75027 752 aa12.94□□□□□ -0.34
XRCC4-202ENST00000338635 TRHP20396 242 aaPredicted RBP12.93□□□□□ -0.34
XRCC4-202ENST00000338635 ZNF219Q9P2Y4 722 aaPredicted RBP12.86□□□□□ -0.35
XRCC4-202ENST00000338635 APLP2Q06481 763 aa12.84□□□□□ -0.35
XRCC4-202ENST00000338635 CHRDL2Q6WN34 429 aa12.83□□□□□ -0.36
XRCC4-202ENST00000338635 RBM42Q9BTD8 480 aaKnown RBP12.82□□□□□ -0.36
XRCC4-202ENST00000338635 KCNA4P22459 653 aa12.79□□□□□ -0.36
XRCC4-202ENST00000338635 SP7Q8TDD2 431 aaPredicted RBP12.77□□□□□ -0.37
XRCC4-202ENST00000338635 SLC4A2P04920 1241 aa12.66□□□□□ -0.38
XRCC4-202ENST00000338635 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.63□□□□□ -0.39
XRCC4-202ENST00000338635 HNRNPUL2Q1KMD3 747 aaKnown RBP12.63□□□□□ -0.39
XRCC4-202ENST00000338635 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.4
XRCC4-202ENST00000338635 POLA2Q14181 598 aa12.4□□□□□ -0.42
XRCC4-202ENST00000338635 HAX1O00165 279 aa12.37□□□□□ -0.43
XRCC4-202ENST00000338635 AKT1S1Q96B36 256 aa12.37□□□□□ -0.43
XRCC4-202ENST00000338635 PIP4P2Q8N4L2 257 aa12.36□□□□□ -0.43
XRCC4-202ENST00000338635 REM2Q8IYK8 340 aaPredicted RBP12.26□□□□□ -0.45
XRCC4-202ENST00000338635 FXR2P51116 673 aaKnown RBP eCLIP12.17□□□□□ -0.46
XRCC4-202ENST00000338635 EVX2Q03828 476 aa12.13□□□□□ -0.47
XRCC4-202ENST00000338635 PITPNM1O00562 1244 aa12.13□□□□□ -0.47
XRCC4-202ENST00000338635 MYCNP04198 464 aaPredicted RBP12.1□□□□□ -0.47
XRCC4-202ENST00000338635 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
XRCC4-202ENST00000338635 SLC4A1APQ9BWU0 796 aaKnown RBP12.07□□□□□ -0.48
XRCC4-202ENST00000338635 OSCARQ8IYS5 282 aa12.03□□□□□ -0.48
XRCC4-202ENST00000338635 LHX8Q68G74 356 aa11.98□□□□□ -0.49
XRCC4-202ENST00000338635 FOXD4L1Q9NU39 408 aa11.93□□□□□ -0.5
XRCC4-202ENST00000338635 ATF5Q9Y2D1 282 aaPredicted RBP11.88□□□□□ -0.51
XRCC4-202ENST00000338635 PLSCR2Q9NRY7 297 aa11.85□□□□□ -0.51
XRCC4-202ENST00000338635 GABBR2O75899 941 aa11.83□□□□□ -0.52
XRCC4-202ENST00000338635 PRKAR2AP13861 404 aaKnown RBP11.82□□□□□ -0.52
XRCC4-202ENST00000338635 C19orf67A6NJJ6 358 aa11.81□□□□□ -0.52
XRCC4-202ENST00000338635 ZBTB22O15209 634 aa11.75□□□□□ -0.53
XRCC4-202ENST00000338635 CLEC11AQ9Y240 323 aa11.67□□□□□ -0.54
XRCC4-202ENST00000338635 SPDYE2BA6NHP3 402 aa11.66□□□□□ -0.54
XRCC4-202ENST00000338635 SPDYE6P0CI01 402 aa11.66□□□□□ -0.54
XRCC4-202ENST00000338635 SPDYE2Q495Y8 402 aa11.66□□□□□ -0.54
XRCC4-202ENST00000338635 SPDYE1Q8NFV5 336 aaPredicted RBP11.65□□□□□ -0.54
XRCC4-202ENST00000338635 ATXN8OSP0DMR3 200 aa11.58□□□□□ -0.56
XRCC4-202ENST00000338635 POTEIP0CG38 1075 aa11.56□□□□□ -0.56
XRCC4-202ENST00000338635 CHADLQ6NUI6 762 aa11.52□□□□□ -0.57
XRCC4-202ENST00000338635 FBLN2P98095 1184 aa11.5□□□□□ -0.57
XRCC4-202ENST00000338635 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
XRCC4-202ENST00000338635 SSUH2Q9Y2M2 353 aa11.41□□□□□ -0.58
XRCC4-202ENST00000338635 CD44P16070 742 aaKnown RBP11.39□□□□□ -0.59
XRCC4-202ENST00000338635 CLCN6P51797 869 aa11.39□□□□□ -0.59
XRCC4-202ENST00000338635 PRR29P0C7W0 189 aa11.37□□□□□ -0.59
XRCC4-202ENST00000338635 DCBLD2Q96PD2 775 aa11.37□□□□□ -0.59
XRCC4-202ENST00000338635 POTEMA6NI47 508 aa11.31□□□□□ -0.6
XRCC4-202ENST00000338635 MKRN4PQ13434 485 aaPredicted RBP11.28□□□□□ -0.6
XRCC4-202ENST00000338635 OTUD5Q96G74 571 aa11.28□□□□□ -0.6
XRCC4-202ENST00000338635 FARP1Q9Y4F1 1045 aaPredicted RBP11.27□□□□□ -0.61
XRCC4-202ENST00000338635 POTEGQ6S5H5 508 aa11.24□□□□□ -0.61
XRCC4-202ENST00000338635 PABPN1Q86U42 306 aaKnown RBP eCLIP11.21□□□□□ -0.61
XRCC4-202ENST00000338635 ZNF579Q8NAF0 562 aaKnown RBP11.18□□□□□ -0.62
XRCC4-202ENST00000338635 CSRNP3Q8WYN3 585 aa11.18□□□□□ -0.62
XRCC4-202ENST00000338635 PCDH10Q9P2E7 1040 aa11.18□□□□□ -0.62
XRCC4-202ENST00000338635 POTEB2H3BUK9 544 aa11.16□□□□□ -0.62
XRCC4-202ENST00000338635 ZRANB1Q9UGI0 708 aa11.12□□□□□ -0.63
XRCC4-202ENST00000338635 GALR2O43603 387 aaPredicted RBP11.09□□□□□ -0.63
XRCC4-202ENST00000338635 EHMT2Q96KQ7 1210 aa11.02□□□□□ -0.65
XRCC4-202ENST00000338635 PELP1Q8IZL8 1130 aaKnown RBP10.94□□□□□ -0.66
XRCC4-202ENST00000338635 LCE2DQ5TA82 110 aaPredicted RBP10.9□□□□□ -0.67
XRCC4-202ENST00000338635 PHF12Q96QT6 1004 aa10.9□□□□□ -0.67
XRCC4-202ENST00000338635 CREBZFQ9NS37 354 aa10.9□□□□□ -0.67
XRCC4-202ENST00000338635 FAM163AQ96GL9 167 aaPredicted RBP10.89□□□□□ -0.67
XRCC4-202ENST00000338635 PAK3O75914 559 aaPredicted RBP10.88□□□□□ -0.67
XRCC4-202ENST00000338635 MAMSTRQ6ZN01 415 aa10.88□□□□□ -0.67
XRCC4-202ENST00000338635 POTEJP0CG39 1038 aa10.87□□□□□ -0.67
XRCC4-202ENST00000338635 METRNQ9UJH8 293 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms