RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CCNB3Q8WWL7 1395 aa13.64□□□□□ -0.23
CCDC88A-202ENST00000336838 WDR43Q15061 677 aaKnown RBP eCLIP13.63□□□□□ -0.235e-6■□□□□ 10.7
CCDC88A-202ENST00000336838 CCER2I3L3R5 266 aa13.61□□□□□ -0.23
CCDC88A-202ENST00000336838 TSPY4P0CV99 314 aa13.6□□□□□ -0.23
CCDC88A-202ENST00000336838 TSPY10P0CW01 314 aa13.6□□□□□ -0.23
CCDC88A-202ENST00000336838 FAM9BQ8IZU0 186 aa13.6□□□□□ -0.23
CCDC88A-202ENST00000336838 P3H3Q8IVL6 736 aa13.6□□□□□ -0.23
CCDC88A-202ENST00000336838 NPM2Q86SE8 214 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-202ENST00000336838 ARHGAP35Q9NRY4 1499 aa13.59□□□□□ -0.23
CCDC88A-202ENST00000336838 PPM1GO15355 546 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-202ENST00000336838 ARID4BQ4LE39 1312 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-202ENST00000336838 WIZO95785 1651 aa13.58□□□□□ -0.24
CCDC88A-202ENST00000336838 SMARCA4P51532 1647 aa13.56□□□□□ -0.24
CCDC88A-202ENST00000336838 MYH16Q9H6N6 1097 aa13.56□□□□□ -0.24
CCDC88A-202ENST00000336838 ZNF777Q9ULD5 760 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-202ENST00000336838 FBLN2P98095 1184 aa13.55□□□□□ -0.24
CCDC88A-202ENST00000336838 PPP4R2Q9NY27 417 aa13.54□□□□□ -0.24
CCDC88A-202ENST00000336838 CHMP4BQ9H444 224 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-202ENST00000336838 GOLGA6L22H0YM25 854 aa13.53□□□□□ -0.24
CCDC88A-202ENST00000336838 SETD5Q9C0A6 1442 aa13.53□□□□□ -0.24
CCDC88A-202ENST00000336838 FMN1Q68DA7 1419 aa13.52□□□□□ -0.25
CCDC88A-202ENST00000336838 MROH2BQ7Z745 1585 aa13.5□□□□□ -0.25
CCDC88A-202ENST00000336838 CCDC88BA6NC98 1476 aa13.49□□□□□ -0.25
CCDC88A-202ENST00000336838 MS4A1P11836 297 aa13.48□□□□□ -0.25
CCDC88A-202ENST00000336838 ABCC8Q09428 1581 aa13.46□□□□□ -0.25
CCDC88A-202ENST00000336838 CFAP44Q96MT7 982 aa13.46□□□□□ -0.25
CCDC88A-202ENST00000336838 NBR1Q14596 966 aa13.44□□□□□ -0.26
CCDC88A-202ENST00000336838 TRIM44Q96DX7 344 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-202ENST00000336838 CFAP53Q96M91 514 aa13.44□□□□□ -0.26
CCDC88A-202ENST00000336838 CASC1Q6TDU7 716 aa13.43□□□□□ -0.26
CCDC88A-202ENST00000336838 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-202ENST00000336838 ESF1Q9H501 851 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-202ENST00000336838 CECR2Q9BXF3 1484 aa13.43□□□□□ -0.26
CCDC88A-202ENST00000336838 KIF21BO75037 1637 aa13.43□□□□□ -0.26
CCDC88A-202ENST00000336838 NOP58Q9Y2X3 529 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-202ENST00000336838 KNSTRNQ9Y448 316 aa13.42□□□□□ -0.26
CCDC88A-202ENST00000336838 ROCK2O75116 1388 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-202ENST00000336838 PTMSP20962 102 aa13.4□□□□□ -0.26
CCDC88A-202ENST00000336838 PLEKHD1A6NEE1 506 aa13.39□□□□□ -0.27
CCDC88A-202ENST00000336838 NCLP19338 710 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-202ENST00000336838 NPM1P06748 294 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC88A-202ENST00000336838 CHIC2Q9UKJ5 165 aa13.39□□□□□ -0.27
CCDC88A-202ENST00000336838 TNNT2P45379 298 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-202ENST00000336838 PNNQ9H307 717 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-202ENST00000336838 CARMIL1Q5VZK9 1371 aa13.38□□□□□ -0.27
CCDC88A-202ENST00000336838 CUX2O14529 1486 aa13.38□□□□□ -0.27
CCDC88A-202ENST00000336838 PHLDB1Q86UU1 1377 aa13.37□□□□□ -0.27
CCDC88A-202ENST00000336838 CHMP7Q8WUX9 453 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-202ENST00000336838 SOGA1O94964 1423 aa13.37□□□□□ -0.27
CCDC88A-202ENST00000336838 CUX1P39880 1505 aa13.36□□□□□ -0.27
CCDC88A-202ENST00000336838 CFDP1Q9UEE9 299 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-202ENST00000336838 STAG3Q9UJ98 1225 aa13.35□□□□□ -0.27
CCDC88A-202ENST00000336838 L1TD1Q5T7N2 865 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-202ENST00000336838 CCDC18Q5T9S5 1454 aa13.33□□□□□ -0.28
CCDC88A-202ENST00000336838 ARID3CA6NKF2 412 aa13.33□□□□□ -0.28
CCDC88A-202ENST00000336838 RRP7BPQ9NSQ0 103 aa13.33□□□□□ -0.28
CCDC88A-202ENST00000336838 CARD11Q9BXL7 1154 aa13.32□□□□□ -0.28
CCDC88A-202ENST00000336838 ERICH3Q5RHP9 1530 aa13.32□□□□□ -0.28
CCDC88A-202ENST00000336838 KANK1Q14678 1352 aa13.31□□□□□ -0.28
CCDC88A-202ENST00000336838 HAP1P54257 671 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-202ENST00000336838 FTSJ3Q8IY81 847 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-202ENST00000336838 RALBP1Q15311 655 aa13.3□□□□□ -0.28
CCDC88A-202ENST00000336838 RAPGEF2Q9Y4G8 1499 aa13.3□□□□□ -0.28
CCDC88A-202ENST00000336838 EIF3AQ14152 1382 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-202ENST00000336838 KTN1Q86UP2 1357 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-202ENST00000336838 EIF4G1Q04637 1599 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-202ENST00000336838 RAB3GAP2Q9H2M9 1393 aa13.28□□□□□ -0.28
CCDC88A-202ENST00000336838 KDM2AQ9Y2K7 1162 aa13.27□□□□□ -0.28
CCDC88A-202ENST00000336838 NUDCQ9Y266 331 aa13.27□□□□□ -0.28
CCDC88A-202ENST00000336838 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.26□□□□□ -0.299e-7■■■□□ 15.8
CCDC88A-202ENST00000336838 CARMIL2Q6F5E8 1435 aa13.26□□□□□ -0.29
CCDC88A-202ENST00000336838 TMF1P82094 1093 aa13.25□□□□□ -0.29
CCDC88A-202ENST00000336838 USP35Q9P2H5 1018 aa13.25□□□□□ -0.29
CCDC88A-202ENST00000336838 TCERG1O14776 1098 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-202ENST00000336838 PDS5BQ9NTI5 1447 aa13.24□□□□□ -0.29
CCDC88A-202ENST00000336838 PDE3BQ13370 1112 aa13.24□□□□□ -0.29
CCDC88A-202ENST00000336838 CHGAP10645 457 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-202ENST00000336838 GOLGA6L6A8MZA4 724 aa13.23□□□□□ -0.29
CCDC88A-202ENST00000336838 MAPK8IP3Q9UPT6 1336 aa13.22□□□□□ -0.29
CCDC88A-202ENST00000336838 IRX6P78412 446 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-202ENST00000336838 ANKRD30AQ9BXX3 1397 aa13.21□□□□□ -0.3
CCDC88A-202ENST00000336838 SALL2Q9Y467 1007 aaPredicted RBP13.21□□□□□ -0.3
CCDC88A-202ENST00000336838 NRDCO43847 1150 aa13.2□□□□□ -0.3
CCDC88A-202ENST00000336838 RBM19Q9Y4C8 960 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-202ENST00000336838 ZRSR1Q15695 479 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-202ENST00000336838 ERCC6Q03468 1493 aa13.19□□□□□ -0.3
CCDC88A-202ENST00000336838 HSCBQ8IWL3 235 aa13.19□□□□□ -0.3
CCDC88A-202ENST00000336838 RSPH4AQ5TD94 716 aa13.18□□□□□ -0.3
CCDC88A-202ENST00000336838 CALD1Q05682 793 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-202ENST00000336838 CHAF1AQ13111 956 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-202ENST00000336838 PTMAP06454 111 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-202ENST00000336838 CHMP4AQ9BY43 222 aa13.16□□□□□ -0.3
CCDC88A-202ENST00000336838 EFCAB5A4FU69 1503 aa13.16□□□□□ -0.3
CCDC88A-202ENST00000336838 KIF15Q9NS87 1388 aa13.15□□□□□ -0.3
CCDC88A-202ENST00000336838 NGEFQ8N5V2 710 aa13.15□□□□□ -0.3
CCDC88A-202ENST00000336838 BCL11AQ9H165 835 aa13.15□□□□□ -0.3
CCDC88A-202ENST00000336838 HIRIP3Q9BW71 556 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-202ENST00000336838 IPO8O15397 1037 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-202ENST00000336838 MCCP23508 829 aa13.13□□□□□ -0.31
CCDC88A-202ENST00000336838 UACAQ9BZF9 1416 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms