RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 CHGAP10645 457 aaKnown RBP13□□□□□ -0.33
COL4A6-201ENST00000334504 ZBTB7CA1YPR0 619 aa12.99□□□□□ -0.33
COL4A6-201ENST00000334504 NOP58Q9Y2X3 529 aaKnown RBP12.98□□□□□ -0.33
COL4A6-201ENST00000334504 WDR43Q15061 677 aaKnown RBP eCLIP12.97□□□□□ -0.33
COL4A6-201ENST00000334504 DEKP35659 375 aaKnown RBP12.96□□□□□ -0.33
COL4A6-201ENST00000334504 P3H3Q8IVL6 736 aa12.95□□□□□ -0.34
COL4A6-201ENST00000334504 ZNF777Q9ULD5 760 aaPredicted RBP12.94□□□□□ -0.34
COL4A6-201ENST00000334504 TPRNQ4KMQ1 711 aa12.94□□□□□ -0.34
COL4A6-201ENST00000334504 MYH16Q9H6N6 1097 aa12.93□□□□□ -0.34
COL4A6-201ENST00000334504 DCAF1Q9Y4B6 1507 aa12.93□□□□□ -0.34
COL4A6-201ENST00000334504 HIRIP3Q9BW71 556 aaPredicted RBP12.9□□□□□ -0.35
COL4A6-201ENST00000334504 SUPT16HQ9Y5B9 1047 aaKnown RBP12.89□□□□□ -0.35
COL4A6-201ENST00000334504 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.89□□□□□ -0.35
COL4A6-201ENST00000334504 ARID4BQ4LE39 1312 aaPredicted RBP12.88□□□□□ -0.35
COL4A6-201ENST00000334504 TULP1O00294 542 aaPredicted RBP12.88□□□□□ -0.35
COL4A6-201ENST00000334504 ZRSR1Q15695 479 aaKnown RBP12.86□□□□□ -0.35
COL4A6-201ENST00000334504 PLCB2Q00722 1185 aa12.86□□□□□ -0.35
COL4A6-201ENST00000334504 CSRNP3Q8WYN3 585 aa12.83□□□□□ -0.36
COL4A6-201ENST00000334504 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
COL4A6-201ENST00000334504 C14orf37Q86TY3 774 aa12.82□□□□□ -0.36
COL4A6-201ENST00000334504 PPP4R2Q9NY27 417 aa12.82□□□□□ -0.36
COL4A6-201ENST00000334504 MSNP26038 577 aaKnown RBP12.81□□□□□ -0.36
COL4A6-201ENST00000334504 L1TD1Q5T7N2 865 aaKnown RBP12.8□□□□□ -0.36
COL4A6-201ENST00000334504 CHAF1AQ13111 956 aaPredicted RBP12.78□□□□□ -0.36
COL4A6-201ENST00000334504 ARID3AQ99856 593 aa12.78□□□□□ -0.36
COL4A6-201ENST00000334504 CASC1Q6TDU7 716 aa12.77□□□□□ -0.37
COL4A6-201ENST00000334504 NPM1P06748 294 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL4A6-201ENST00000334504 GOLGA6L6A8MZA4 724 aa12.77□□□□□ -0.37
COL4A6-201ENST00000334504 RGS3P49796 1198 aa12.77□□□□□ -0.37
COL4A6-201ENST00000334504 HSP90AB1P08238 724 aaKnown RBP12.76□□□□□ -0.37
COL4A6-201ENST00000334504 HAP1P54257 671 aaPredicted RBP12.76□□□□□ -0.37
COL4A6-201ENST00000334504 KDM2AQ9Y2K7 1162 aa12.76□□□□□ -0.37
COL4A6-201ENST00000334504 NCBP3Q53F19 620 aaKnown RBP12.76□□□□□ -0.37
COL4A6-201ENST00000334504 RBM19Q9Y4C8 960 aaKnown RBP12.75□□□□□ -0.37
COL4A6-201ENST00000334504 CHIC2Q9UKJ5 165 aa12.74□□□□□ -0.37
COL4A6-201ENST00000334504 B4GALNT3Q6L9W6 998 aa12.74□□□□□ -0.37
COL4A6-201ENST00000334504 EIF4G2P78344 907 aaKnown RBP eCLIP12.73□□□□□ -0.37
COL4A6-201ENST00000334504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.7□□□□□ -0.38
COL4A6-201ENST00000334504 TNNT3P45378 269 aaPredicted RBP12.69□□□□□ -0.38
COL4A6-201ENST00000334504 FTSJ3Q8IY81 847 aaKnown RBP12.69□□□□□ -0.38
COL4A6-201ENST00000334504 SPRYD3Q8NCJ5 442 aa12.69□□□□□ -0.38
COL4A6-201ENST00000334504 NRDCO43847 1150 aa12.68□□□□□ -0.38
COL4A6-201ENST00000334504 PNNQ9H307 717 aaKnown RBP12.68□□□□□ -0.38
COL4A6-201ENST00000334504 HSCBQ8IWL3 235 aa12.67□□□□□ -0.38
COL4A6-201ENST00000334504 DRC7Q8IY82 874 aa12.66□□□□□ -0.38
COL4A6-201ENST00000334504 TAOK2Q9UL54 1235 aa12.65□□□□□ -0.38
COL4A6-201ENST00000334504 NPHP1O15259 732 aa12.63□□□□□ -0.39
COL4A6-201ENST00000334504 FRAT1Q92837 279 aaPredicted RBP12.61□□□□□ -0.39
COL4A6-201ENST00000334504 GZF1Q9H116 711 aaPredicted RBP12.61□□□□□ -0.39
COL4A6-201ENST00000334504 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
COL4A6-201ENST00000334504 GOLGA6L4A6NEF3 574 aa12.6□□□□□ -0.39
COL4A6-201ENST00000334504 VSIG10Q8N0Z9 540 aa12.59□□□□□ -0.39
COL4A6-201ENST00000334504 HSP90AA2PQ14568 343 aaPredicted RBP12.58□□□□□ -0.4
COL4A6-201ENST00000334504 NEUROD2Q15784 382 aa12.58□□□□□ -0.4
COL4A6-201ENST00000334504 KIAA2012Q0VF49 1180 aa12.58□□□□□ -0.4
COL4A6-201ENST00000334504 TSHZ2Q9NRE2 1034 aa12.57□□□□□ -0.4
COL4A6-201ENST00000334504 LMOD2Q6P5Q4 547 aa12.57□□□□□ -0.4
COL4A6-201ENST00000334504 SCRIBQ14160 1630 aa12.57□□□□□ -0.4
COL4A6-201ENST00000334504 CFAP53Q96M91 514 aa12.56□□□□□ -0.4
COL4A6-201ENST00000334504 NAP1L2Q9ULW6 460 aaPredicted RBP12.55□□□□□ -0.4
COL4A6-201ENST00000334504 CCDC180Q9P1Z9 1646 aa12.55□□□□□ -0.4
COL4A6-201ENST00000334504 FGD1P98174 961 aa12.55□□□□□ -0.4
COL4A6-201ENST00000334504 GOLGA6L3A6NEY3 463 aa12.55□□□□□ -0.4
COL4A6-201ENST00000334504 RSPH6AQ9H0K4 717 aa12.54□□□□□ -0.4
COL4A6-201ENST00000334504 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
COL4A6-201ENST00000334504 PPP1R15AO75807 674 aaPredicted RBP12.53□□□□□ -0.4
COL4A6-201ENST00000334504 GBP4Q96PP9 640 aa12.53□□□□□ -0.4
COL4A6-201ENST00000334504 RRP7BPQ9NSQ0 103 aa12.53□□□□□ -0.4
COL4A6-201ENST00000334504 PTMSP20962 102 aa12.52□□□□□ -0.4
COL4A6-201ENST00000334504 KCNJ4P48050 445 aa12.52□□□□□ -0.4
COL4A6-201ENST00000334504 SLKQ9H2G2 1235 aaPredicted RBP12.52□□□□□ -0.41
COL4A6-201ENST00000334504 MAPK8IP3Q9UPT6 1336 aa12.49□□□□□ -0.41
COL4A6-201ENST00000334504 OS9Q13438 667 aaPredicted RBP12.48□□□□□ -0.41
COL4A6-201ENST00000334504 IPO9Q96P70 1041 aaKnown RBP12.48□□□□□ -0.41
COL4A6-201ENST00000334504 MS4A1P11836 297 aa12.48□□□□□ -0.41
COL4A6-201ENST00000334504 CHMP4BQ9H444 224 aaKnown RBP12.48□□□□□ -0.41
COL4A6-201ENST00000334504 MCCP23508 829 aa12.48□□□□□ -0.41
COL4A6-201ENST00000334504 TSPY4P0CV99 314 aa12.48□□□□□ -0.41
COL4A6-201ENST00000334504 TSPY10P0CW01 314 aa12.48□□□□□ -0.41
COL4A6-201ENST00000334504 MTUS2Q5JR59 1369 aa12.47□□□□□ -0.41
COL4A6-201ENST00000334504 CC2D1BQ5T0F9 858 aaKnown RBP12.46□□□□□ -0.41
COL4A6-201ENST00000334504 KCNH8Q96L42 1107 aa12.46□□□□□ -0.41
COL4A6-201ENST00000334504 GOLGA6L1Q8N7Z2 621 aa12.46□□□□□ -0.41
COL4A6-201ENST00000334504 NOC3LQ8WTT2 800 aaKnown RBP12.46□□□□□ -0.42
COL4A6-201ENST00000334504 RGL3Q3MIN7 710 aa12.45□□□□□ -0.42
COL4A6-201ENST00000334504 CARD11Q9BXL7 1154 aa12.45□□□□□ -0.42
COL4A6-201ENST00000334504 MYO15BQ96JP2 1530 aa12.44□□□□□ -0.42
COL4A6-201ENST00000334504 CDCA8Q53HL2 280 aa12.44□□□□□ -0.42
COL4A6-201ENST00000334504 TCERG1O14776 1098 aaKnown RBP12.43□□□□□ -0.42
COL4A6-201ENST00000334504 SYAP1Q96A49 352 aaPredicted RBP12.42□□□□□ -0.42
COL4A6-201ENST00000334504 SIN3AQ96ST3 1273 aa12.42□□□□□ -0.42
COL4A6-201ENST00000334504 CLIP1P30622 1438 aa12.42□□□□□ -0.42
COL4A6-201ENST00000334504 CLSTN1O94985 981 aa12.42□□□□□ -0.42
COL4A6-201ENST00000334504 TIMELESSQ9UNS1 1208 aa12.42□□□□□ -0.42
COL4A6-201ENST00000334504 NUDCQ9Y266 331 aa12.41□□□□□ -0.42
COL4A6-201ENST00000334504 CCER2I3L3R5 266 aa12.41□□□□□ -0.42
COL4A6-201ENST00000334504 CHMP7Q8WUX9 453 aaPredicted RBP12.41□□□□□ -0.42
COL4A6-201ENST00000334504 SETQ01105 290 aaPredicted RBP12.4□□□□□ -0.42
COL4A6-201ENST00000334504 ZNF771Q7L3S4 317 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-201ENST00000334504 CFAP44Q96MT7 982 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms