RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
ATP2C1-201ENST00000328560 FHOD3Q2V2M9 1422 aa20.28■□□□□ 0.84
ATP2C1-201ENST00000328560 NESP48681 1621 aa20.28■□□□□ 0.84
ATP2C1-201ENST00000328560 TIAM1Q13009 1591 aa20.26■□□□□ 0.83
ATP2C1-201ENST00000328560 LRRC9Q6ZRR7 1453 aa20.26■□□□□ 0.83
ATP2C1-201ENST00000328560 FHAD1B1AJZ9 1412 aa20.25■□□□□ 0.83
ATP2C1-201ENST00000328560 SETD5Q9C0A6 1442 aa20.24■□□□□ 0.83
ATP2C1-201ENST00000328560 PRDM2Q13029 1718 aa20.24■□□□□ 0.83
ATP2C1-201ENST00000328560 TOPBP1Q92547 1522 aa20.2■□□□□ 0.82
ATP2C1-201ENST00000328560 POLA1P09884 1462 aaPredicted RBP20.19■□□□□ 0.82
ATP2C1-201ENST00000328560 HIRIP3Q9BW71 556 aaPredicted RBP20.18■□□□□ 0.82
ATP2C1-201ENST00000328560 PDS5BQ9NTI5 1447 aa20.18■□□□□ 0.82
ATP2C1-201ENST00000328560 DNMBPQ6XZF7 1577 aa20.18■□□□□ 0.82
ATP2C1-201ENST00000328560 TDRD9Q8NDG6 1382 aaKnown RBP20.17■□□□□ 0.82
ATP2C1-201ENST00000328560 DDX10Q13206 875 aaKnown RBP20.15■□□□□ 0.82
ATP2C1-201ENST00000328560 KCNH8Q96L42 1107 aa20.15■□□□□ 0.82
ATP2C1-201ENST00000328560 PCF11O94913 1555 aaKnown RBP20.14■□□□□ 0.82
ATP2C1-201ENST00000328560 MAP3K1Q13233 1512 aa20.13■□□□□ 0.81
ATP2C1-201ENST00000328560 ABCA10Q8WWZ4 1543 aa20.13■□□□□ 0.81
ATP2C1-201ENST00000328560 DNAJC5BQ9UF47 199 aa20.12■□□□□ 0.81
ATP2C1-201ENST00000328560 MAPKBP1O60336 1514 aa20.12■□□□□ 0.81
ATP2C1-201ENST00000328560 MTUS2Q5JR59 1369 aa20.1■□□□□ 0.81
ATP2C1-201ENST00000328560 LAMC3Q9Y6N6 1575 aa20.07■□□□□ 0.8
ATP2C1-201ENST00000328560 ARID3CA6NKF2 412 aa20.06■□□□□ 0.8
ATP2C1-201ENST00000328560 CASKIN1Q8WXD9 1431 aa20.04■□□□□ 0.8
ATP2C1-201ENST00000328560 FYCO1Q9BQS8 1478 aa20.02■□□□□ 0.8
ATP2C1-201ENST00000328560 URB2Q14146 1524 aaKnown RBP20.02■□□□□ 0.79
ATP2C1-201ENST00000328560 GAPVD1Q14C86 1478 aa20.01■□□□□ 0.79
ATP2C1-201ENST00000328560 FMN1Q68DA7 1419 aa20.01■□□□□ 0.79
ATP2C1-201ENST00000328560 WDR97A6NE52 1622 aa20.01■□□□□ 0.79
ATP2C1-201ENST00000328560 SUPT16HQ9Y5B9 1047 aaKnown RBP20■□□□□ 0.79
ATP2C1-201ENST00000328560 CHIC2Q9UKJ5 165 aa19.98■□□□□ 0.79
ATP2C1-201ENST00000328560 PPP1R15AO75807 674 aaPredicted RBP19.97■□□□□ 0.79
ATP2C1-201ENST00000328560 EFCAB5A4FU69 1503 aa19.97■□□□□ 0.79
ATP2C1-201ENST00000328560 FGD6Q6ZV73 1430 aa19.97■□□□□ 0.79
ATP2C1-201ENST00000328560 CFAP43Q8NDM7 1665 aa19.97■□□□□ 0.79
ATP2C1-201ENST00000328560 TONSLQ96HA7 1378 aa19.96■□□□□ 0.79
ATP2C1-201ENST00000328560 RRP7BPQ9NSQ0 103 aa19.95■□□□□ 0.78
ATP2C1-201ENST00000328560 CUL7Q14999 1698 aa19.94■□□□□ 0.78
ATP2C1-201ENST00000328560 BCANQ96GW7 911 aa19.91■□□□□ 0.78
ATP2C1-201ENST00000328560 TRIM52Q96A61 297 aa19.91■□□□□ 0.78
ATP2C1-201ENST00000328560 AQRO60306 1485 aaKnown RBP eCLIP19.91■□□□□ 0.782e-7■■■■■ 33.1
ATP2C1-201ENST00000328560 TIMELESSQ9UNS1 1208 aa19.9■□□□□ 0.78
ATP2C1-201ENST00000328560 PTPRKQ15262 1439 aa19.89■□□□□ 0.77
ATP2C1-201ENST00000328560 CCDC18Q5T9S5 1454 aa19.88■□□□□ 0.77
ATP2C1-201ENST00000328560 ANP32CO43423 234 aa19.88■□□□□ 0.77
ATP2C1-201ENST00000328560 SNAPC4Q5SXM2 1469 aa19.87■□□□□ 0.77
ATP2C1-201ENST00000328560 CTTNBP2Q8WZ74 1663 aa19.87■□□□□ 0.77
ATP2C1-201ENST00000328560 NCOA2Q15596 1464 aa19.86■□□□□ 0.77
ATP2C1-201ENST00000328560 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.86■□□□□ 0.77
ATP2C1-201ENST00000328560 MYOM3Q5VTT5 1437 aa19.83■□□□□ 0.76
ATP2C1-201ENST00000328560 HFM1A2PYH4 1435 aa19.8■□□□□ 0.76
ATP2C1-201ENST00000328560 FKBP8Q14318 412 aa19.79■□□□□ 0.76
ATP2C1-201ENST00000328560 FBLN2P98095 1184 aa19.79■□□□□ 0.76
ATP2C1-201ENST00000328560 UACAQ9BZF9 1416 aa19.79■□□□□ 0.76
ATP2C1-201ENST00000328560 NAIPQ13075 1403 aa19.78■□□□□ 0.76
ATP2C1-201ENST00000328560 GRIN2BQ13224 1484 aa19.77■□□□□ 0.76
ATP2C1-201ENST00000328560 ABCA5Q8WWZ7 1642 aa19.76■□□□□ 0.75
ATP2C1-201ENST00000328560 FOXD1Q16676 465 aa19.75■□□□□ 0.75
ATP2C1-201ENST00000328560 KIF21AQ7Z4S6 1674 aa19.74■□□□□ 0.75
ATP2C1-201ENST00000328560 MRC2Q9UBG0 1479 aa19.74■□□□□ 0.75
ATP2C1-201ENST00000328560 SAMD9Q5K651 1589 aa19.73■□□□□ 0.75
ATP2C1-201ENST00000328560 PTPN23Q9H3S7 1636 aa19.72■□□□□ 0.75
ATP2C1-201ENST00000328560 NEFLP07196 543 aa19.71■□□□□ 0.75
ATP2C1-201ENST00000328560 CHMP7Q8WUX9 453 aaPredicted RBP19.71■□□□□ 0.75
ATP2C1-201ENST00000328560 ERCC6Q03468 1493 aa19.7■□□□□ 0.74
ATP2C1-201ENST00000328560 EHBP1L1Q8N3D4 1523 aa19.69■□□□□ 0.74
ATP2C1-201ENST00000328560 SUPT6HQ7KZ85 1726 aaKnown RBP19.69■□□□□ 0.74
ATP2C1-201ENST00000328560 MAGI3Q5TCQ9 1506 aa19.68■□□□□ 0.74
ATP2C1-201ENST00000328560 CCER2I3L3R5 266 aa19.68■□□□□ 0.74
ATP2C1-201ENST00000328560 CDK11AQ9UQ88 783 aaPredicted RBP19.68■□□□□ 0.74
ATP2C1-201ENST00000328560 LRRIQ1Q96JM4 1722 aa19.68■□□□□ 0.74
ATP2C1-201ENST00000328560 CDK13Q14004 1512 aaKnown RBP19.67■□□□□ 0.74
ATP2C1-201ENST00000328560 HSPA5P11021 654 aaKnown RBP19.66■□□□□ 0.74
ATP2C1-201ENST00000328560 MPHOSPH9Q99550 1183 aa19.66■□□□□ 0.74
ATP2C1-201ENST00000328560 TSHZ2Q9NRE2 1034 aa19.64■□□□□ 0.74
ATP2C1-201ENST00000328560 MYT1Q01538 1121 aa19.64■□□□□ 0.73
ATP2C1-201ENST00000328560 UGGT2Q9NYU1 1516 aa19.64■□□□□ 0.73
ATP2C1-201ENST00000328560 ZNF644Q9H582 1327 aaPredicted RBP19.63■□□□□ 0.73
ATP2C1-201ENST00000328560 EPRSP07814 1512 aaKnown RBP19.63■□□□□ 0.73
ATP2C1-201ENST00000328560 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
ATP2C1-201ENST00000328560 IFT140Q96RY7 1462 aa19.62■□□□□ 0.73
ATP2C1-201ENST00000328560 L3MBTL2Q969R5 705 aa19.61■□□□□ 0.73
ATP2C1-201ENST00000328560 HNRNPUQ00839 825 aaKnown RBP eCLIP19.61■□□□□ 0.73
ATP2C1-201ENST00000328560 EIF4G2P78344 907 aaKnown RBP eCLIP19.6■□□□□ 0.73
ATP2C1-201ENST00000328560 ZNF777Q9ULD5 760 aaPredicted RBP19.6■□□□□ 0.73
ATP2C1-201ENST00000328560 IQGAP2Q13576 1575 aa19.59■□□□□ 0.73
ATP2C1-201ENST00000328560 THOC2Q8NI27 1593 aaKnown RBP19.59■□□□□ 0.73
ATP2C1-201ENST00000328560 CNGB1Q14028 1251 aaPredicted RBP19.59■□□□□ 0.73
ATP2C1-201ENST00000328560 ZNF608Q9ULD9 1512 aaPredicted RBP19.58■□□□□ 0.73
ATP2C1-201ENST00000328560 WASHC2AQ641Q2 1341 aa19.57■□□□□ 0.72
ATP2C1-201ENST00000328560 SLC4A1APQ9BWU0 796 aaKnown RBP19.57■□□□□ 0.72
ATP2C1-201ENST00000328560 HECW1Q76N89 1606 aa19.56■□□□□ 0.72
ATP2C1-201ENST00000328560 IRX6P78412 446 aaPredicted RBP19.52■□□□□ 0.72
ATP2C1-201ENST00000328560 ARHGEF11O15085 1522 aa19.52■□□□□ 0.72
ATP2C1-201ENST00000328560 KDM6BO15054 1643 aa19.52■□□□□ 0.72
ATP2C1-201ENST00000328560 ZNF326Q5BKZ1 582 aaKnown RBP19.52■□□□□ 0.72
ATP2C1-201ENST00000328560 POLR3GLQ9BT43 218 aa19.52■□□□□ 0.72
ATP2C1-201ENST00000328560 ADAMTS12P58397 1594 aa19.51■□□□□ 0.71
ATP2C1-201ENST00000328560 TCOF1Q13428 1488 aaKnown RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms