RNA–Protein interactions for RNA: ENST00000323926.10

FN1-201, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 8,708 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-201ENST00000323926 CCDC136Q96JN2 1154 aa16.61■□□□□ 0.25
FN1-201ENST00000323926 SMARCA2P51531 1590 aa16.6■□□□□ 0.25
FN1-201ENST00000323926 MS4A1P11836 297 aa16.58■□□□□ 0.25
FN1-201ENST00000323926 HNRNPUQ00839 825 aaKnown RBP eCLIP16.58■□□□□ 0.25
FN1-201ENST00000323926 CFAP53Q96M91 514 aa16.58■□□□□ 0.24
FN1-201ENST00000323926 CHMP7Q8WUX9 453 aaPredicted RBP16.57■□□□□ 0.24
FN1-201ENST00000323926 EIF4G2P78344 907 aaKnown RBP eCLIP16.56■□□□□ 0.24
FN1-201ENST00000323926 KAT6BQ8WYB5 2073 aa16.55■□□□□ 0.24
FN1-201ENST00000323926 ZRSR1Q15695 479 aaKnown RBP16.54■□□□□ 0.24
FN1-201ENST00000323926 HAP1P54257 671 aaPredicted RBP16.52■□□□□ 0.24
FN1-201ENST00000323926 TNNT2P45379 298 aaPredicted RBP16.52■□□□□ 0.23
FN1-201ENST00000323926 CHGAP10645 457 aaKnown RBP16.51■□□□□ 0.23
FN1-201ENST00000323926 ARID4BQ4LE39 1312 aaPredicted RBP16.5■□□□□ 0.23
FN1-201ENST00000323926 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
FN1-201ENST00000323926 CEP162Q5TB80 1403 aa16.49■□□□□ 0.23
FN1-201ENST00000323926 TRIM44Q96DX7 344 aaPredicted RBP16.48■□□□□ 0.23
FN1-201ENST00000323926 CHMP4AQ9BY43 222 aa16.47■□□□□ 0.23
FN1-201ENST00000323926 NRDCO43847 1150 aa16.47■□□□□ 0.23
FN1-201ENST00000323926 GOLGA6L6A8MZA4 724 aa16.47■□□□□ 0.23
FN1-201ENST00000323926 KANK1Q14678 1352 aa16.46■□□□□ 0.23
FN1-201ENST00000323926 PLEKHD1A6NEE1 506 aa16.46■□□□□ 0.23
FN1-201ENST00000323926 ERCC6Q03468 1493 aa16.46■□□□□ 0.22
FN1-201ENST00000323926 HDGFP51858 240 aaKnown RBP16.45■□□□□ 0.22
FN1-201ENST00000323926 WRNQ14191 1432 aaPredicted RBP eCLIP16.44■□□□□ 0.22
FN1-201ENST00000323926 FKBP8Q14318 412 aa16.44■□□□□ 0.22
FN1-201ENST00000323926 MRS2Q9HD23 443 aa16.43■□□□□ 0.22
FN1-201ENST00000323926 PPP1R15AO75807 674 aaPredicted RBP16.43■□□□□ 0.22
FN1-201ENST00000323926 KNSTRNQ9Y448 316 aa16.42■□□□□ 0.22
FN1-201ENST00000323926 L1TD1Q5T7N2 865 aaKnown RBP16.4■□□□□ 0.22
FN1-201ENST00000323926 TIMELESSQ9UNS1 1208 aa16.4■□□□□ 0.22
FN1-201ENST00000323926 MYO15BQ96JP2 1530 aa16.39■□□□□ 0.21
FN1-201ENST00000323926 FAM9BQ8IZU0 186 aa16.39■□□□□ 0.21
FN1-201ENST00000323926 BCL11AQ9H165 835 aa16.39■□□□□ 0.21
FN1-201ENST00000323926 NUDCQ9Y266 331 aa16.38■□□□□ 0.21
FN1-201ENST00000323926 PTMSP20962 102 aa16.37■□□□□ 0.21
FN1-201ENST00000323926 FTSJ3Q8IY81 847 aaKnown RBP16.36■□□□□ 0.21
FN1-201ENST00000323926 TNIKQ9UKE5 1360 aa16.35■□□□□ 0.21
FN1-201ENST00000323926 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.35■□□□□ 0.21
FN1-201ENST00000323926 DDX10Q13206 875 aaKnown RBP16.34■□□□□ 0.21
FN1-201ENST00000323926 PPM1GO15355 546 aaPredicted RBP16.32■□□□□ 0.2
FN1-201ENST00000323926 ERICH6BQ5W0A0 696 aa16.31■□□□□ 0.2
FN1-201ENST00000323926 MAPK8IP3Q9UPT6 1336 aa16.29■□□□□ 0.2
FN1-201ENST00000323926 ARHGAP35Q9NRY4 1499 aa16.28■□□□□ 0.2
FN1-201ENST00000323926 CALD1Q05682 793 aaKnown RBP16.27■□□□□ 0.2
FN1-201ENST00000323926 ARID3CA6NKF2 412 aa16.27■□□□□ 0.2
FN1-201ENST00000323926 CFDP1Q9UEE9 299 aaPredicted RBP16.27■□□□□ 0.2
FN1-201ENST00000323926 C14orf37Q86TY3 774 aa16.27■□□□□ 0.19
FN1-201ENST00000323926 CARMIL2Q6F5E8 1435 aa16.26■□□□□ 0.19
FN1-201ENST00000323926 EIF3AQ14152 1382 aaKnown RBP16.25■□□□□ 0.19
FN1-201ENST00000323926 FMN1Q68DA7 1419 aa16.25■□□□□ 0.19
FN1-201ENST00000323926 HDAC5Q9UQL6 1122 aa16.24■□□□□ 0.19
FN1-201ENST00000323926 MCCP23508 829 aa16.23■□□□□ 0.19
FN1-201ENST00000323926 CHAF1AQ13111 956 aaPredicted RBP16.23■□□□□ 0.19
FN1-201ENST00000323926 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
FN1-201ENST00000323926 CCNB3Q8WWL7 1395 aa16.22■□□□□ 0.19
FN1-201ENST00000323926 USP35Q9P2H5 1018 aa16.21■□□□□ 0.19
FN1-201ENST00000323926 SCAF1Q9H7N4 1312 aaKnown RBP16.2■□□□□ 0.18
FN1-201ENST00000323926 KDM2AQ9Y2K7 1162 aa16.2■□□□□ 0.18
FN1-201ENST00000323926 PTMAP06454 111 aaKnown RBP16.19■□□□□ 0.18
FN1-201ENST00000323926 CHIC2Q9UKJ5 165 aa16.19■□□□□ 0.18
FN1-201ENST00000323926 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
FN1-201ENST00000323926 CCDC34Q96HJ3 373 aa16.17■□□□□ 0.18
FN1-201ENST00000323926 PHLDB1Q86UU1 1377 aa16.17■□□□□ 0.18
FN1-201ENST00000323926 GOLGA2Q08379 1002 aa16.15■□□□□ 0.18
FN1-201ENST00000323926 TOP2AP11388 1531 aaKnown RBP16.15■□□□□ 0.18
FN1-201ENST00000323926 EIF4G1Q04637 1599 aaKnown RBP16.15■□□□□ 0.18
FN1-201ENST00000323926 TMF1P82094 1093 aa16.14■□□□□ 0.17
FN1-201ENST00000323926 CARD11Q9BXL7 1154 aa16.14■□□□□ 0.17
FN1-201ENST00000323926 CCDC18Q5T9S5 1454 aa16.13■□□□□ 0.17
FN1-201ENST00000323926 PRDM2Q13029 1718 aa16.13■□□□□ 0.17
FN1-201ENST00000323926 HTATSF1O43719 755 aaKnown RBP16.12■□□□□ 0.17
FN1-201ENST00000323926 POGKQ9P215 609 aa16.12■□□□□ 0.17
FN1-201ENST00000323926 IPO8O15397 1037 aaKnown RBP16.11■□□□□ 0.17
FN1-201ENST00000323926 DNTTIP2Q5QJE6 756 aaKnown RBP16.11■□□□□ 0.17
FN1-201ENST00000323926 ANO8Q9HCE9 1232 aaPredicted RBP16.11■□□□□ 0.17
FN1-201ENST00000323926 RSPH4AQ5TD94 716 aa16.1■□□□□ 0.17
FN1-201ENST00000323926 ROCK2O75116 1388 aaKnown RBP16.1■□□□□ 0.17
FN1-201ENST00000323926 FGD1P98174 961 aa16.1■□□□□ 0.17
FN1-201ENST00000323926 CHMP4CQ96CF2 233 aa16.09■□□□□ 0.17
FN1-201ENST00000323926 UACAQ9BZF9 1416 aa16.08■□□□□ 0.17
FN1-201ENST00000323926 PPP4R2Q9NY27 417 aa16.08■□□□□ 0.16
FN1-201ENST00000323926 NPHP1O15259 732 aa16.08■□□□□ 0.16
FN1-201ENST00000323926 KIAA2012Q0VF49 1180 aa16.07■□□□□ 0.16
FN1-201ENST00000323926 NBR1Q14596 966 aa16.06■□□□□ 0.16
FN1-201ENST00000323926 GOLGA6L4A6NEF3 574 aa16.06■□□□□ 0.16
FN1-201ENST00000323926 SMARCA4P51532 1647 aa16.06■□□□□ 0.16
FN1-201ENST00000323926 VPS8Q8N3P4 1428 aa16.06■□□□□ 0.16
FN1-201ENST00000323926 SYAP1Q96A49 352 aaPredicted RBP16.06■□□□□ 0.16
FN1-201ENST00000323926 KCNJ4P48050 445 aa16.05■□□□□ 0.16
FN1-201ENST00000323926 HSCBQ8IWL3 235 aa16.05■□□□□ 0.16
FN1-201ENST00000323926 RRP7BPQ9NSQ0 103 aa16.05■□□□□ 0.16
FN1-201ENST00000323926 CCER2I3L3R5 266 aa16.05■□□□□ 0.16
FN1-201ENST00000323926 HSP90AB1P08238 724 aaKnown RBP16.04■□□□□ 0.16
FN1-201ENST00000323926 SALL2Q9Y467 1007 aaPredicted RBP16.04■□□□□ 0.16
FN1-201ENST00000323926 OS9Q13438 667 aaPredicted RBP16.04■□□□□ 0.16
FN1-201ENST00000323926 SETD5Q9C0A6 1442 aa16.03■□□□□ 0.16
FN1-201ENST00000323926 GPATCH3Q96I76 525 aa16.03■□□□□ 0.16
FN1-201ENST00000323926 KTN1Q86UP2 1357 aaKnown RBP16.03■□□□□ 0.16
FN1-201ENST00000323926 CSPP1Q1MSJ5 1256 aa16.02■□□□□ 0.16
FN1-201ENST00000323926 CUX2O14529 1486 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms