RNA–Protein interactions for RNA: ENST00000323926.10

FN1-201, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 8,708 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-201ENST00000323926 NISCHQ9Y2I1 1504 aa20.77■□□□□ 0.92
FN1-201ENST00000323926 DCAF8L2P0C7V8 631 aa20.75■□□□□ 0.91
FN1-201ENST00000323926 PELP1Q8IZL8 1130 aaKnown RBP20.41■□□□□ 0.86
FN1-201ENST00000323926 FAM9AQ8IZU1 332 aaPredicted RBP20.05■□□□□ 0.8
FN1-201ENST00000323926 APLP2Q06481 763 aa19.75■□□□□ 0.75
FN1-201ENST00000323926 SUPT5HO00267 1087 aaKnown RBP19.65■□□□□ 0.74
FN1-201ENST00000323926 CCER1Q8TC90 406 aaPredicted RBP19.42■□□□□ 0.7
FN1-201ENST00000323926 ZEB1P37275 1124 aaPredicted RBP19.31■□□□□ 0.68
FN1-201ENST00000323926 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
FN1-201ENST00000323926 MYT1Q01538 1121 aa19.14■□□□□ 0.65
FN1-201ENST00000323926 CENPBP07199 599 aaPredicted RBP19.11■□□□□ 0.65
FN1-201ENST00000323926 ERICH6Q7L0X2 663 aa18.93■□□□□ 0.62
FN1-201ENST00000323926 NEFLP07196 543 aa18.77■□□□□ 0.6
FN1-201ENST00000323926 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
FN1-201ENST00000323926 YTHDC1Q96MU7 727 aaKnown RBP18.69■□□□□ 0.58
FN1-201ENST00000323926 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
FN1-201ENST00000323926 EHMT2Q96KQ7 1210 aa18.51■□□□□ 0.55
FN1-201ENST00000323926 PCGF6Q9BYE7 350 aa18.48■□□□□ 0.55
FN1-201ENST00000323926 DAXXQ9UER7 740 aaPredicted RBP18.38■□□□□ 0.53
FN1-201ENST00000323926 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
FN1-201ENST00000323926 TRIM26Q12899 539 aaPredicted RBP18.22■□□□□ 0.51
FN1-201ENST00000323926 CCDC180Q9P1Z9 1646 aa18.19■□□□□ 0.5
FN1-201ENST00000323926 TTBK1Q5TCY1 1321 aaPredicted RBP18.06■□□□□ 0.48
FN1-201ENST00000323926 RANGAP1P46060 587 aaPredicted RBP18.03■□□□□ 0.48
FN1-201ENST00000323926 MYT1LQ9UL68 1186 aa17.93■□□□□ 0.46
FN1-201ENST00000323926 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.86■□□□□ 0.45
FN1-201ENST00000323926 HNRNPUL2Q1KMD3 747 aaKnown RBP17.86■□□□□ 0.45
FN1-201ENST00000323926 ZNF316A6NFI3 1004 aaPredicted RBP17.83■□□□□ 0.44
FN1-201ENST00000323926 RTL5Q5HYW3 569 aaPredicted RBP17.79■□□□□ 0.44
FN1-201ENST00000323926 CLSPNQ9HAW4 1339 aa17.7■□□□□ 0.42
FN1-201ENST00000323926 ZBTB47Q9UFB7 747 aaPredicted RBP17.68■□□□□ 0.42
FN1-201ENST00000323926 NEFMP07197 916 aa17.66■□□□□ 0.42
FN1-201ENST00000323926 HRCP23327 699 aa17.64■□□□□ 0.42
FN1-201ENST00000323926 ACIN1Q9UKV3 1341 aaKnown RBP17.6■□□□□ 0.41
FN1-201ENST00000323926 POLR3GLQ9BT43 218 aa17.55■□□□□ 0.4
FN1-201ENST00000323926 SLC4A1APQ9BWU0 796 aaKnown RBP17.53■□□□□ 0.4
FN1-201ENST00000323926 ITGAEP38570 1179 aa17.51■□□□□ 0.39
FN1-201ENST00000323926 DIEXFQ68CQ4 756 aaKnown RBP17.47■□□□□ 0.39
FN1-201ENST00000323926 ANP32CO43423 234 aa17.46■□□□□ 0.39
FN1-201ENST00000323926 CDK11AQ9UQ88 783 aaPredicted RBP17.46■□□□□ 0.39
FN1-201ENST00000323926 CHIC1Q5VXU3 224 aa17.42■□□□□ 0.38
FN1-201ENST00000323926 FAM50AQ14320 339 aaKnown RBP17.41■□□□□ 0.38
FN1-201ENST00000323926 ABCC9O60706 1549 aa17.38■□□□□ 0.37
FN1-201ENST00000323926 RB1CC1Q8TDY2 1594 aa17.36■□□□□ 0.37
FN1-201ENST00000323926 TRIM52Q96A61 297 aa17.34■□□□□ 0.37
FN1-201ENST00000323926 SCRIBQ14160 1630 aa17.32■□□□□ 0.36
FN1-201ENST00000323926 ANP32BQ92688 251 aaKnown RBP17.3■□□□□ 0.36
FN1-201ENST00000323926 CANXP27824 592 aaKnown RBP17.27■□□□□ 0.35
FN1-201ENST00000323926 ANP32AP39687 249 aaKnown RBP17.23■□□□□ 0.35
FN1-201ENST00000323926 NACADO15069 1562 aa17.21■□□□□ 0.35
FN1-201ENST00000323926 PPARGC1BQ86YN6 1023 aaKnown RBP17.21■□□□□ 0.35
FN1-201ENST00000323926 UPF2Q9HAU5 1272 aaKnown RBP17.21■□□□□ 0.35
FN1-201ENST00000323926 EIF5BO60841 1220 aaKnown RBP17.2■□□□□ 0.34
FN1-201ENST00000323926 ZCCHC6Q5VYS8 1495 aaKnown RBP17.18■□□□□ 0.34
FN1-201ENST00000323926 ESF1Q9H501 851 aaKnown RBP17.17■□□□□ 0.34
FN1-201ENST00000323926 DCAF1Q9Y4B6 1507 aa17.15■□□□□ 0.34
FN1-201ENST00000323926 LOC105371045A0A1W2PR82 267 aa17.09■□□□□ 0.33
FN1-201ENST00000323926 EEA1Q15075 1411 aa17.09■□□□□ 0.33
FN1-201ENST00000323926 TONSLQ96HA7 1378 aa17.06■□□□□ 0.32
FN1-201ENST00000323926 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.05■□□□□ 0.32
FN1-201ENST00000323926 NEUROD1Q13562 356 aa17.03■□□□□ 0.32
FN1-201ENST00000323926 GLIPR1L2Q4G1C9 344 aa17.03■□□□□ 0.32
FN1-201ENST00000323926 HSP90AA1P07900 732 aaKnown RBP17.01■□□□□ 0.31
FN1-201ENST00000323926 BCANQ96GW7 911 aa17.01■□□□□ 0.31
FN1-201ENST00000323926 NPM1P06748 294 aaKnown RBP eCLIP17■□□□□ 0.31
FN1-201ENST00000323926 ANP32EQ9BTT0 268 aa16.97■□□□□ 0.31
FN1-201ENST00000323926 SLC24A1O60721 1099 aa16.97■□□□□ 0.31
FN1-201ENST00000323926 CSRNP3Q8WYN3 585 aa16.97■□□□□ 0.31
FN1-201ENST00000323926 RSF1Q96T23 1441 aaPredicted RBP16.96■□□□□ 0.31
FN1-201ENST00000323926 FBLN2P98095 1184 aa16.95■□□□□ 0.3
FN1-201ENST00000323926 ZNF326Q5BKZ1 582 aaKnown RBP16.94■□□□□ 0.3
FN1-201ENST00000323926 CNGB1Q14028 1251 aaPredicted RBP16.91■□□□□ 0.3
FN1-201ENST00000323926 STAG3Q9UJ98 1225 aa16.89■□□□□ 0.29
FN1-201ENST00000323926 PABPN1Q86U42 306 aaKnown RBP eCLIP16.88■□□□□ 0.29
FN1-201ENST00000323926 MYH16Q9H6N6 1097 aa16.86■□□□□ 0.29
FN1-201ENST00000323926 CDCA8Q53HL2 280 aa16.81■□□□□ 0.28
FN1-201ENST00000323926 CDK11BP21127 795 aaKnown RBP16.8■□□□□ 0.28
FN1-201ENST00000323926 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
FN1-201ENST00000323926 MTUS2Q5JR59 1369 aa16.78■□□□□ 0.28
FN1-201ENST00000323926 TSPY4P0CV99 314 aa16.77■□□□□ 0.28
FN1-201ENST00000323926 TSPY10P0CW01 314 aa16.77■□□□□ 0.28
FN1-201ENST00000323926 GTF3C3Q9Y5Q9 886 aa16.77■□□□□ 0.27
FN1-201ENST00000323926 GOLGA3Q08378 1498 aa16.76■□□□□ 0.27
FN1-201ENST00000323926 WDR43Q15061 677 aaKnown RBP eCLIP16.75■□□□□ 0.27
FN1-201ENST00000323926 CHMP4BQ9H444 224 aaKnown RBP16.75■□□□□ 0.27
FN1-201ENST00000323926 TMC1Q8TDI8 760 aa16.74■□□□□ 0.27
FN1-201ENST00000323926 BECN1Q14457 450 aa16.73■□□□□ 0.27
FN1-201ENST00000323926 NPM2Q86SE8 214 aaKnown RBP16.71■□□□□ 0.27
FN1-201ENST00000323926 DDRGK1Q96HY6 314 aa16.71■□□□□ 0.26
FN1-201ENST00000323926 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
FN1-201ENST00000323926 ZNF777Q9ULD5 760 aaPredicted RBP16.69■□□□□ 0.26
FN1-201ENST00000323926 FHAD1B1AJZ9 1412 aa16.68■□□□□ 0.26
FN1-201ENST00000323926 GOLGA6L22H0YM25 854 aa16.66■□□□□ 0.26
FN1-201ENST00000323926 CEP164Q9UPV0 1460 aa16.66■□□□□ 0.26
FN1-201ENST00000323926 CASC1Q6TDU7 716 aa16.66■□□□□ 0.26
FN1-201ENST00000323926 CLIP1P30622 1438 aa16.66■□□□□ 0.26
FN1-201ENST00000323926 KIF27Q86VH2 1401 aa16.64■□□□□ 0.25
FN1-201ENST00000323926 CFAP44Q96MT7 982 aa16.63■□□□□ 0.25
FN1-201ENST00000323926 PNNQ9H307 717 aaKnown RBP16.62■□□□□ 0.25
FN1-201ENST00000323926 NCLP19338 710 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms