RNA–Protein interactions for RNA: ENST00000315994.6

SH3PXD2A-201, Transcript of SH3 and PX domains 2A, humanhuman

TSL 1 (best)

Gene SH3PXD2A, Length 5,504 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3PXD2A-201ENST00000315994 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
SH3PXD2A-201ENST00000315994 CFDP1Q9UEE9 299 aaPredicted RBP17.55■□□□□ 0.4
SH3PXD2A-201ENST00000315994 EIF4G1Q04637 1599 aaKnown RBP17.54■□□□□ 0.4
SH3PXD2A-201ENST00000315994 DDX10Q13206 875 aaKnown RBP17.54■□□□□ 0.4
SH3PXD2A-201ENST00000315994 CANXP27824 592 aaKnown RBP17.52■□□□□ 0.4
SH3PXD2A-201ENST00000315994 CADPSQ9ULU8 1353 aa17.51■□□□□ 0.39
SH3PXD2A-201ENST00000315994 PLPPR3Q6T4P5 718 aa17.5■□□□□ 0.39
SH3PXD2A-201ENST00000315994 SLC24A1O60721 1099 aa17.5■□□□□ 0.39
SH3PXD2A-201ENST00000315994 KDM2AQ9Y2K7 1162 aa17.49■□□□□ 0.39
SH3PXD2A-201ENST00000315994 ZBTB47Q9UFB7 747 aaPredicted RBP17.47■□□□□ 0.39
SH3PXD2A-201ENST00000315994 SCAF1Q9H7N4 1312 aaKnown RBP17.46■□□□□ 0.39
SH3PXD2A-201ENST00000315994 VPS8Q8N3P4 1428 aa17.44■□□□□ 0.38
SH3PXD2A-201ENST00000315994 EIF4G2P78344 907 aaKnown RBP eCLIP17.43■□□□□ 0.38
SH3PXD2A-201ENST00000315994 CCNB3Q8WWL7 1395 aa17.42■□□□□ 0.38
SH3PXD2A-201ENST00000315994 HNRNPUQ00839 825 aaKnown RBP eCLIP17.39■□□□□ 0.372e-6■■□□□ 12.3
SH3PXD2A-201ENST00000315994 TDRD9Q8NDG6 1382 aaKnown RBP17.39■□□□□ 0.37
SH3PXD2A-201ENST00000315994 FAM9BQ8IZU0 186 aa17.38■□□□□ 0.37
SH3PXD2A-201ENST00000315994 RTL5Q5HYW3 569 aaPredicted RBP17.37■□□□□ 0.37
SH3PXD2A-201ENST00000315994 TMC1Q8TDI8 760 aa17.36■□□□□ 0.37
SH3PXD2A-201ENST00000315994 CARMIL2Q6F5E8 1435 aa17.36■□□□□ 0.37
SH3PXD2A-201ENST00000315994 FMN1Q68DA7 1419 aa17.33■□□□□ 0.36
SH3PXD2A-201ENST00000315994 ARHGAP35Q9NRY4 1499 aa17.32■□□□□ 0.36
SH3PXD2A-201ENST00000315994 RAPGEF2Q9Y4G8 1499 aa17.32■□□□□ 0.36
SH3PXD2A-201ENST00000315994 HIRIP3Q9BW71 556 aaPredicted RBP17.31■□□□□ 0.36
SH3PXD2A-201ENST00000315994 MRS2Q9HD23 443 aa17.3■□□□□ 0.36
SH3PXD2A-201ENST00000315994 RGL3Q3MIN7 710 aa17.29■□□□□ 0.36
SH3PXD2A-201ENST00000315994 WDR43Q15061 677 aaKnown RBP eCLIP17.28■□□□□ 0.36
SH3PXD2A-201ENST00000315994 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
SH3PXD2A-201ENST00000315994 PPP1R15AO75807 674 aaPredicted RBP17.27■□□□□ 0.35
SH3PXD2A-201ENST00000315994 MIER1Q8N108 512 aa17.25■□□□□ 0.35
SH3PXD2A-201ENST00000315994 FKBP8Q14318 412 aa17.25■□□□□ 0.35
SH3PXD2A-201ENST00000315994 KANK4Q5T7N3 995 aaPredicted RBP17.23■□□□□ 0.35
SH3PXD2A-201ENST00000315994 CDCA8Q53HL2 280 aa17.22■□□□□ 0.35
SH3PXD2A-201ENST00000315994 SETD5Q9C0A6 1442 aa17.21■□□□□ 0.35
SH3PXD2A-201ENST00000315994 SIN3AQ96ST3 1273 aa17.21■□□□□ 0.35
SH3PXD2A-201ENST00000315994 SALL2Q9Y467 1007 aaPredicted RBP17.21■□□□□ 0.35
SH3PXD2A-201ENST00000315994 ARID4BQ4LE39 1312 aaPredicted RBP17.21■□□□□ 0.35
SH3PXD2A-201ENST00000315994 CARD11Q9BXL7 1154 aa17.21■□□□□ 0.34
SH3PXD2A-201ENST00000315994 BCL11AQ9H165 835 aa17.19■□□□□ 0.34
SH3PXD2A-201ENST00000315994 NCAPD3P42695 1498 aa17.19■□□□□ 0.34
SH3PXD2A-201ENST00000315994 TIMELESSQ9UNS1 1208 aa17.18■□□□□ 0.34
SH3PXD2A-201ENST00000315994 KANK1Q14678 1352 aa17.17■□□□□ 0.34
SH3PXD2A-201ENST00000315994 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.17■□□□□ 0.34
SH3PXD2A-201ENST00000315994 FHOD3Q2V2M9 1422 aa17.15■□□□□ 0.34
SH3PXD2A-201ENST00000315994 ANP32AP39687 249 aaKnown RBP17.13■□□□□ 0.33
SH3PXD2A-201ENST00000315994 RUSC2Q8N2Y8 1516 aa17.12■□□□□ 0.33
SH3PXD2A-201ENST00000315994 SENP3Q9H4L4 574 aaPredicted RBP17.11■□□□□ 0.33
SH3PXD2A-201ENST00000315994 KNSTRNQ9Y448 316 aa17.1■□□□□ 0.33
SH3PXD2A-201ENST00000315994 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
SH3PXD2A-201ENST00000315994 CCDC18Q5T9S5 1454 aa17.07■□□□□ 0.32
SH3PXD2A-201ENST00000315994 EFCAB2Q5VUJ9 269 aa17.07■□□□□ 0.32
SH3PXD2A-201ENST00000315994 JPH4Q96JJ6 628 aa17.06■□□□□ 0.32
SH3PXD2A-201ENST00000315994 CCDC136Q96JN2 1154 aa17.05■□□□□ 0.32
SH3PXD2A-201ENST00000315994 ANKRD30AQ9BXX3 1397 aa17.05■□□□□ 0.32
SH3PXD2A-201ENST00000315994 CFAP53Q96M91 514 aa17.05■□□□□ 0.32
SH3PXD2A-201ENST00000315994 RAB3GAP2Q9H2M9 1393 aa17.05■□□□□ 0.32
SH3PXD2A-201ENST00000315994 DCAF11Q8TEB1 546 aa17.05■□□□□ 0.32
SH3PXD2A-201ENST00000315994 C14orf37Q86TY3 774 aa17.02■□□□□ 0.32
SH3PXD2A-201ENST00000315994 GAPVD1Q14C86 1478 aa17.02■□□□□ 0.32
SH3PXD2A-201ENST00000315994 PKD2Q13563 968 aa17.02■□□□□ 0.32
SH3PXD2A-201ENST00000315994 NPM2Q86SE8 214 aaKnown RBP17.01■□□□□ 0.31
SH3PXD2A-201ENST00000315994 POGKQ9P215 609 aa17.01■□□□□ 0.31
SH3PXD2A-201ENST00000315994 IGF1RP08069 1367 aa17■□□□□ 0.31
SH3PXD2A-201ENST00000315994 UPF2Q9HAU5 1272 aaKnown RBP16.99■□□□□ 0.31
SH3PXD2A-201ENST00000315994 RSPH4AQ5TD94 716 aa16.98■□□□□ 0.31
SH3PXD2A-201ENST00000315994 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
SH3PXD2A-201ENST00000315994 TMF1P82094 1093 aa16.98■□□□□ 0.31
SH3PXD2A-201ENST00000315994 RAD54L2Q9Y4B4 1467 aa16.98■□□□□ 0.31
SH3PXD2A-201ENST00000315994 NUP155O75694 1391 aa16.96■□□□□ 0.31
SH3PXD2A-201ENST00000315994 A0A0G2JS52 829 aa16.96■□□□□ 0.31
SH3PXD2A-201ENST00000315994 TRHP20396 242 aaPredicted RBP16.96■□□□□ 0.31
SH3PXD2A-201ENST00000315994 HDGFP51858 240 aaKnown RBP16.96■□□□□ 0.31
SH3PXD2A-201ENST00000315994 GGT6Q6P531 493 aa16.95■□□□□ 0.3
SH3PXD2A-201ENST00000315994 CFTRP13569 1480 aa16.94■□□□□ 0.3
SH3PXD2A-201ENST00000315994 ZBTB7CA1YPR0 619 aa16.94■□□□□ 0.3
SH3PXD2A-201ENST00000315994 HMGXB3Q12766 1538 aa16.93■□□□□ 0.3
SH3PXD2A-201ENST00000315994 FOXD1Q16676 465 aa16.92■□□□□ 0.3
SH3PXD2A-201ENST00000315994 HNRNPMP52272 730 aaKnown RBP eCLIP16.92■□□□□ 0.31e-6■■■■■ 32.6
SH3PXD2A-201ENST00000315994 HAP1P54257 671 aaPredicted RBP16.92■□□□□ 0.3
SH3PXD2A-201ENST00000315994 MLECQ14165 292 aa16.92■□□□□ 0.3
SH3PXD2A-201ENST00000315994 PTPRGP23470 1445 aa16.91■□□□□ 0.3
SH3PXD2A-201ENST00000315994 IRX6P78412 446 aaPredicted RBP16.9■□□□□ 0.3
SH3PXD2A-201ENST00000315994 HSPA5P11021 654 aaKnown RBP16.9■□□□□ 0.3
SH3PXD2A-201ENST00000315994 NUDCQ9Y266 331 aa16.89■□□□□ 0.3
SH3PXD2A-201ENST00000315994 MYH16Q9H6N6 1097 aa16.89■□□□□ 0.29
SH3PXD2A-201ENST00000315994 PPM1GO15355 546 aaPredicted RBP16.88■□□□□ 0.29
SH3PXD2A-201ENST00000315994 ANP32EQ9BTT0 268 aa16.88■□□□□ 0.29
SH3PXD2A-201ENST00000315994 SPAG9O60271 1321 aaKnown RBP16.87■□□□□ 0.29
SH3PXD2A-201ENST00000315994 CC2D1BQ5T0F9 858 aaKnown RBP16.87■□□□□ 0.29
SH3PXD2A-201ENST00000315994 CC2D2AQ9P2K1 1620 aa16.87■□□□□ 0.29
SH3PXD2A-201ENST00000315994 HSP90AA1P07900 732 aaKnown RBP16.86■□□□□ 0.29
SH3PXD2A-201ENST00000315994 MAPK8IP3Q9UPT6 1336 aa16.86■□□□□ 0.29
SH3PXD2A-201ENST00000315994 PLEKHG5O94827 1062 aa16.85■□□□□ 0.29
SH3PXD2A-201ENST00000315994 KIF3BO15066 747 aa16.84■□□□□ 0.29
SH3PXD2A-201ENST00000315994 ROCK2O75116 1388 aaKnown RBP16.84■□□□□ 0.29
SH3PXD2A-201ENST00000315994 KIF21BO75037 1637 aa16.83■□□□□ 0.29
SH3PXD2A-201ENST00000315994 SYNJ1O43426 1573 aa16.83■□□□□ 0.28
SH3PXD2A-201ENST00000315994 AQRO60306 1485 aaKnown RBP eCLIP16.83■□□□□ 0.286e-7■■■□□ 16.8
SH3PXD2A-201ENST00000315994 CCER2I3L3R5 266 aa16.83■□□□□ 0.28
SH3PXD2A-201ENST00000315994 ERICH3Q5RHP9 1530 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms