RNA–Protein interactions for RNA: ENST00000307142.8

SYNPO2-201, Transcript of synaptopodin 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SYNPO2, Length 7,295 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-201ENST00000307142 GOLGA3Q08378 1498 aa14.62□□□□□ -0.07
SYNPO2-201ENST00000307142 CUX2O14529 1486 aa14.58□□□□□ -0.08
SYNPO2-201ENST00000307142 RGL3Q3MIN7 710 aa14.57□□□□□ -0.08
SYNPO2-201ENST00000307142 EEA1Q15075 1411 aa14.54□□□□□ -0.08
SYNPO2-201ENST00000307142 NPM2Q86SE8 214 aaKnown RBP14.53□□□□□ -0.08
SYNPO2-201ENST00000307142 TMC1Q8TDI8 760 aa14.53□□□□□ -0.08
SYNPO2-201ENST00000307142 LMOD2Q6P5Q4 547 aa14.52□□□□□ -0.09
SYNPO2-201ENST00000307142 SALL2Q9Y467 1007 aaPredicted RBP14.51□□□□□ -0.09
SYNPO2-201ENST00000307142 SOGA1O94964 1423 aa14.5□□□□□ -0.09
SYNPO2-201ENST00000307142 CEP164Q9UPV0 1460 aa14.49□□□□□ -0.09
SYNPO2-201ENST00000307142 CARMIL1Q5VZK9 1371 aa14.49□□□□□ -0.09
SYNPO2-201ENST00000307142 WIZO95785 1651 aa14.49□□□□□ -0.09
SYNPO2-201ENST00000307142 WDR43Q15061 677 aaKnown RBP eCLIP14.48□□□□□ -0.09
SYNPO2-201ENST00000307142 MROH2BQ7Z745 1585 aa14.48□□□□□ -0.09
SYNPO2-201ENST00000307142 CEP162Q5TB80 1403 aa14.46□□□□□ -0.09
SYNPO2-201ENST00000307142 CARMIL2Q6F5E8 1435 aa14.46□□□□□ -0.09
SYNPO2-201ENST00000307142 MYT1Q01538 1121 aa14.46□□□□□ -0.09
SYNPO2-201ENST00000307142 CCDC88BA6NC98 1476 aa14.46□□□□□ -0.1
SYNPO2-201ENST00000307142 CCNB3Q8WWL7 1395 aa14.45□□□□□ -0.1
SYNPO2-201ENST00000307142 FAM9BQ8IZU0 186 aa14.45□□□□□ -0.1
SYNPO2-201ENST00000307142 POGKQ9P215 609 aa14.44□□□□□ -0.1
SYNPO2-201ENST00000307142 KANK1Q14678 1352 aa14.43□□□□□ -0.1
SYNPO2-201ENST00000307142 DDX10Q13206 875 aaKnown RBP14.43□□□□□ -0.1
SYNPO2-201ENST00000307142 TDRD9Q8NDG6 1382 aaKnown RBP14.43□□□□□ -0.1
SYNPO2-201ENST00000307142 ARXQ96QS3 562 aa14.42□□□□□ -0.1
SYNPO2-201ENST00000307142 PPM1GO15355 546 aaPredicted RBP14.41□□□□□ -0.1
SYNPO2-201ENST00000307142 ABCC8Q09428 1581 aa14.4□□□□□ -0.1
SYNPO2-201ENST00000307142 HDGFP51858 240 aaKnown RBP14.39□□□□□ -0.11
SYNPO2-201ENST00000307142 GGT6Q6P531 493 aa14.39□□□□□ -0.11
SYNPO2-201ENST00000307142 RTL5Q5HYW3 569 aaPredicted RBP14.38□□□□□ -0.11
SYNPO2-201ENST00000307142 HIRIP3Q9BW71 556 aaPredicted RBP14.37□□□□□ -0.11
SYNPO2-201ENST00000307142 FHAD1B1AJZ9 1412 aa14.37□□□□□ -0.11
SYNPO2-201ENST00000307142 ACIN1Q9UKV3 1341 aaKnown RBP14.34□□□□□ -0.11
SYNPO2-201ENST00000307142 CYB5RLQ6IPT4 315 aa14.34□□□□□ -0.11
SYNPO2-201ENST00000307142 AEBP2Q6ZN18 517 aaPredicted RBP14.34□□□□□ -0.11
SYNPO2-201ENST00000307142 TOP2AP11388 1531 aaKnown RBP14.33□□□□□ -0.11
SYNPO2-201ENST00000307142 SMARCA4P51532 1647 aa14.33□□□□□ -0.12
SYNPO2-201ENST00000307142 CADPSQ9ULU8 1353 aa14.33□□□□□ -0.12
SYNPO2-201ENST00000307142 EIF4G2P78344 907 aaKnown RBP eCLIP14.33□□□□□ -0.12
SYNPO2-201ENST00000307142 HNRNPUQ00839 825 aaKnown RBP eCLIP14.33□□□□□ -0.12
SYNPO2-201ENST00000307142 NPHP1O15259 732 aa14.32□□□□□ -0.12
SYNPO2-201ENST00000307142 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
SYNPO2-201ENST00000307142 CDCA8Q53HL2 280 aa14.29□□□□□ -0.12
SYNPO2-201ENST00000307142 OSCARQ8IYS5 282 aa14.29□□□□□ -0.12
SYNPO2-201ENST00000307142 CARD11Q9BXL7 1154 aa14.29□□□□□ -0.12
SYNPO2-201ENST00000307142 FANCD2Q9BXW9 1451 aa14.27□□□□□ -0.13
SYNPO2-201ENST00000307142 CFAP53Q96M91 514 aa14.27□□□□□ -0.13
SYNPO2-201ENST00000307142 KNSTRNQ9Y448 316 aa14.27□□□□□ -0.13
SYNPO2-201ENST00000307142 ATAD2BQ9ULI0 1458 aa14.26□□□□□ -0.13
SYNPO2-201ENST00000307142 MRS2Q9HD23 443 aa14.26□□□□□ -0.13
SYNPO2-201ENST00000307142 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.25□□□□□ -0.13
SYNPO2-201ENST00000307142 SOX12O15370 315 aa14.25□□□□□ -0.13
SYNPO2-201ENST00000307142 SAFB2Q14151 953 aaKnown RBP eCLIP14.25□□□□□ -0.13
SYNPO2-201ENST00000307142 EFCAB2Q5VUJ9 269 aa14.24□□□□□ -0.13
SYNPO2-201ENST00000307142 STK26Q9P289 416 aa14.23□□□□□ -0.13
SYNPO2-201ENST00000307142 MYH16Q9H6N6 1097 aa14.23□□□□□ -0.13
SYNPO2-201ENST00000307142 HSP90AA1P07900 732 aaKnown RBP14.23□□□□□ -0.13
SYNPO2-201ENST00000307142 TNNT2P45379 298 aaPredicted RBP14.23□□□□□ -0.13
SYNPO2-201ENST00000307142 MYO15BQ96JP2 1530 aa14.22□□□□□ -0.13
SYNPO2-201ENST00000307142 JPH4Q96JJ6 628 aa14.22□□□□□ -0.13
SYNPO2-201ENST00000307142 SRPK2P78362 688 aaKnown RBP14.22□□□□□ -0.13
SYNPO2-201ENST00000307142 LAS1LQ9Y4W2 734 aaKnown RBP14.21□□□□□ -0.13
SYNPO2-201ENST00000307142 ARHGAP35Q9NRY4 1499 aa14.2□□□□□ -0.14
SYNPO2-201ENST00000307142 DCAF11Q8TEB1 546 aa14.2□□□□□ -0.14
SYNPO2-201ENST00000307142 PAK3O75914 559 aaPredicted RBP14.2□□□□□ -0.14
SYNPO2-201ENST00000307142 PRDM2Q13029 1718 aa14.18□□□□□ -0.14
SYNPO2-201ENST00000307142 GTF3C3Q9Y5Q9 886 aa14.18□□□□□ -0.14
SYNPO2-201ENST00000307142 UPF2Q9HAU5 1272 aaKnown RBP14.17□□□□□ -0.14
SYNPO2-201ENST00000307142 EID1Q9Y6B2 187 aa14.16□□□□□ -0.14
SYNPO2-201ENST00000307142 HNRNPMP52272 730 aaKnown RBP eCLIP14.16□□□□□ -0.14
SYNPO2-201ENST00000307142 FMN1Q68DA7 1419 aa14.16□□□□□ -0.14
SYNPO2-201ENST00000307142 CCDC9Q9Y3X0 531 aaKnown RBP14.15□□□□□ -0.14
SYNPO2-201ENST00000307142 KIF3BO15066 747 aa14.15□□□□□ -0.14
SYNPO2-201ENST00000307142 MAPK8IP3Q9UPT6 1336 aa14.15□□□□□ -0.14
SYNPO2-201ENST00000307142 NUDCQ9Y266 331 aa14.13□□□□□ -0.15
SYNPO2-201ENST00000307142 NEUROD2Q15784 382 aa14.12□□□□□ -0.15
SYNPO2-201ENST00000307142 RAPGEF2Q9Y4G8 1499 aa14.12□□□□□ -0.15
SYNPO2-201ENST00000307142 WASHC2CQ9Y4E1 1318 aa14.12□□□□□ -0.15
SYNPO2-201ENST00000307142 ANP32AP39687 249 aaKnown RBP14.12□□□□□ -0.15
SYNPO2-201ENST00000307142 U2SURPO15042 1029 aaKnown RBP14.12□□□□□ -0.15
SYNPO2-201ENST00000307142 SPAG9O60271 1321 aaKnown RBP14.12□□□□□ -0.15
SYNPO2-201ENST00000307142 SENP3-EIF4A1A0A087X0R7 540 aa14.11□□□□□ -0.15
SYNPO2-201ENST00000307142 CC2D1BQ5T0F9 858 aaKnown RBP14.11□□□□□ -0.15
SYNPO2-201ENST00000307142 FKBP8Q14318 412 aa14.11□□□□□ -0.15
SYNPO2-201ENST00000307142 SIN3AQ96ST3 1273 aa14.1□□□□□ -0.15
SYNPO2-201ENST00000307142 CC2D2AQ9P2K1 1620 aa14.09□□□□□ -0.15
SYNPO2-201ENST00000307142 NUTM2DQ5VT03 806 aaPredicted RBP14.09□□□□□ -0.15
SYNPO2-201ENST00000307142 CSB-PGBD3P0DP91 1061 aa14.09□□□□□ -0.15
SYNPO2-201ENST00000307142 TMF1P82094 1093 aa14.09□□□□□ -0.15
SYNPO2-201ENST00000307142 FAM69CQ0P6D2 419 aa14.09□□□□□ -0.15
SYNPO2-201ENST00000307142 FHOD3Q2V2M9 1422 aa14.08□□□□□ -0.16
SYNPO2-201ENST00000307142 PKD2Q13563 968 aa14.08□□□□□ -0.16
SYNPO2-201ENST00000307142 PTPRGP23470 1445 aa14.07□□□□□ -0.16
SYNPO2-201ENST00000307142 FOXD1Q16676 465 aa14.07□□□□□ -0.16
SYNPO2-201ENST00000307142 CCDC18Q5T9S5 1454 aa14.06□□□□□ -0.16
SYNPO2-201ENST00000307142 ANKRD30AQ9BXX3 1397 aa14.06□□□□□ -0.16
SYNPO2-201ENST00000307142 CCDC136Q96JN2 1154 aa14.05□□□□□ -0.16
SYNPO2-201ENST00000307142 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
SYNPO2-201ENST00000307142 PNNQ9H307 717 aaKnown RBP14.04□□□□□ -0.16
SYNPO2-201ENST00000307142 NUP155O75694 1391 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms