RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 TRIM52Q96A61 297 aa15.43■□□□□ 0.06
ZNF558-201ENST00000301475 PPP1R15AO75807 674 aaPredicted RBP15.43■□□□□ 0.06
ZNF558-201ENST00000301475 BIVM-ERCC5R4GMW8 1640 aa15.41■□□□□ 0.06
ZNF558-201ENST00000301475 SIN3AQ96ST3 1273 aa15.38■□□□□ 0.05
ZNF558-201ENST00000301475 ARHGAP35Q9NRY4 1499 aa15.38■□□□□ 0.05
ZNF558-201ENST00000301475 HIRIP3Q9BW71 556 aaPredicted RBP15.36■□□□□ 0.05
ZNF558-201ENST00000301475 CCER2I3L3R5 266 aa15.35■□□□□ 0.05
ZNF558-201ENST00000301475 SETD5Q9C0A6 1442 aa15.34■□□□□ 0.05
ZNF558-201ENST00000301475 FANCIQ9NVI1 1328 aa15.32■□□□□ 0.04
ZNF558-201ENST00000301475 CFTRP13569 1480 aa15.31■□□□□ 0.04
ZNF558-201ENST00000301475 ANP32CO43423 234 aa15.3■□□□□ 0.04
ZNF558-201ENST00000301475 CADPSQ9ULU8 1353 aa15.3■□□□□ 0.04
ZNF558-201ENST00000301475 TIAM1Q13009 1591 aa15.3■□□□□ 0.04
ZNF558-201ENST00000301475 PHLDB1Q86UU1 1377 aa15.26■□□□□ 0.03
ZNF558-201ENST00000301475 NESP48681 1621 aa15.26■□□□□ 0.03
ZNF558-201ENST00000301475 IRX6P78412 446 aaPredicted RBP15.25■□□□□ 0.03
ZNF558-201ENST00000301475 CUX1P39880 1505 aa15.25■□□□□ 0.03
ZNF558-201ENST00000301475 KIF27Q86VH2 1401 aa15.25■□□□□ 0.03
ZNF558-201ENST00000301475 MAP3K1Q13233 1512 aa15.23■□□□□ 0.03
ZNF558-201ENST00000301475 LRRC9Q6ZRR7 1453 aa15.22■□□□□ 0.03
ZNF558-201ENST00000301475 TIMELESSQ9UNS1 1208 aa15.22■□□□□ 0.03
ZNF558-201ENST00000301475 ERICH6Q7L0X2 663 aa15.21■□□□□ 0.03
ZNF558-201ENST00000301475 CDK11AQ9UQ88 783 aaPredicted RBP15.21■□□□□ 0.03
ZNF558-201ENST00000301475 FAM50AQ14320 339 aaKnown RBP15.2■□□□□ 0.02
ZNF558-201ENST00000301475 HNRNPUQ00839 825 aaKnown RBP eCLIP15.18■□□□□ 0.02
ZNF558-201ENST00000301475 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
ZNF558-201ENST00000301475 CFAP43Q8NDM7 1665 aa15.15■□□□□ 0.02
ZNF558-201ENST00000301475 DEKP35659 375 aaKnown RBP15.11■□□□□ 0.01
ZNF558-201ENST00000301475 TONSLQ96HA7 1378 aa15.11■□□□□ 0.01
ZNF558-201ENST00000301475 PCF11O94913 1555 aaKnown RBP15.11■□□□□ 0.01
ZNF558-201ENST00000301475 MYT1LQ9UL68 1186 aa15.08■□□□□ 0
ZNF558-201ENST00000301475 PPP4R2Q9NY27 417 aa15.08■□□□□ 0
ZNF558-201ENST00000301475 KDM5BQ9UGL1 1544 aa15.07■□□□□ 0
ZNF558-201ENST00000301475 IGF1RP08069 1367 aa15.06■□□□□ 0
ZNF558-201ENST00000301475 ERICH6BQ5W0A0 696 aa15.06■□□□□ 0
ZNF558-201ENST00000301475 PRKCSHP14314 528 aaPredicted RBP15.06■□□□□ 0
ZNF558-201ENST00000301475 FGD5Q6ZNL6 1462 aa15.05■□□□□ -0
ZNF558-201ENST00000301475 FHAD1B1AJZ9 1412 aa15.05■□□□□ -0
ZNF558-201ENST00000301475 CCDC18Q5T9S5 1454 aa15.04■□□□□ -0
ZNF558-201ENST00000301475 B4GALNT3Q6L9W6 998 aa15.04■□□□□ -0
ZNF558-201ENST00000301475 CCDC184Q52MB2 194 aa15.03■□□□□ -0
ZNF558-201ENST00000301475 WASHC2AQ641Q2 1341 aa15.02■□□□□ -0
ZNF558-201ENST00000301475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.02□□□□□ -0.01
ZNF558-201ENST00000301475 RAD54L2Q9Y4B4 1467 aa15.01□□□□□ -0.01
ZNF558-201ENST00000301475 UACAQ9BZF9 1416 aa15.01□□□□□ -0.01
ZNF558-201ENST00000301475 PAK3O75914 559 aaPredicted RBP15□□□□□ -0.01
ZNF558-201ENST00000301475 P3H3Q8IVL6 736 aa15□□□□□ -0.01
ZNF558-201ENST00000301475 CARMIL1Q5VZK9 1371 aa15□□□□□ -0.01
ZNF558-201ENST00000301475 NOP58Q9Y2X3 529 aaKnown RBP14.99□□□□□ -0.01
ZNF558-201ENST00000301475 PTPRKQ15262 1439 aa14.99□□□□□ -0.01
ZNF558-201ENST00000301475 ATP1B4Q9UN42 357 aaPredicted RBP14.99□□□□□ -0.01
ZNF558-201ENST00000301475 PTPN23Q9H3S7 1636 aa14.99□□□□□ -0.01
ZNF558-201ENST00000301475 NBR1Q14596 966 aa14.98□□□□□ -0.01
ZNF558-201ENST00000301475 HFM1A2PYH4 1435 aa14.98□□□□□ -0.01
ZNF558-201ENST00000301475 PRDM2Q13029 1718 aa14.98□□□□□ -0.01
ZNF558-201ENST00000301475 FGD6Q6ZV73 1430 aa14.98□□□□□ -0.01
ZNF558-201ENST00000301475 FHOD3Q2V2M9 1422 aa14.97□□□□□ -0.01
ZNF558-201ENST00000301475 PDS5BQ9NTI5 1447 aa14.97□□□□□ -0.01
ZNF558-201ENST00000301475 AQRO60306 1485 aaKnown RBP eCLIP14.97□□□□□ -0.012e-10■■■■■ 54.2
ZNF558-201ENST00000301475 NCOA2Q15596 1464 aa14.97□□□□□ -0.01
ZNF558-201ENST00000301475 FYCO1Q9BQS8 1478 aa14.96□□□□□ -0.01
ZNF558-201ENST00000301475 TOPBP1Q92547 1522 aa14.96□□□□□ -0.01
ZNF558-201ENST00000301475 HSPA5P11021 654 aaKnown RBP14.96□□□□□ -0.01
ZNF558-201ENST00000301475 LAMC3Q9Y6N6 1575 aa14.95□□□□□ -0.02
ZNF558-201ENST00000301475 CNTLNQ9NXG0 1405 aa14.95□□□□□ -0.02
ZNF558-201ENST00000301475 POLA1P09884 1462 aaPredicted RBP14.94□□□□□ -0.02
ZNF558-201ENST00000301475 TDRD9Q8NDG6 1382 aaKnown RBP14.93□□□□□ -0.02
ZNF558-201ENST00000301475 URB2Q14146 1524 aaKnown RBP14.93□□□□□ -0.02
ZNF558-201ENST00000301475 NAIPQ13075 1403 aa14.93□□□□□ -0.02
ZNF558-201ENST00000301475 ZBED9Q6R2W3 1325 aa14.93□□□□□ -0.02
ZNF558-201ENST00000301475 FAM9BQ8IZU0 186 aa14.92□□□□□ -0.02
ZNF558-201ENST00000301475 CASKIN1Q8WXD9 1431 aa14.92□□□□□ -0.02
ZNF558-201ENST00000301475 DNMBPQ6XZF7 1577 aa14.9□□□□□ -0.02
ZNF558-201ENST00000301475 PRKRIP1Q9H875 184 aaPredicted RBP14.9□□□□□ -0.02
ZNF558-201ENST00000301475 MRS2Q9HD23 443 aa14.88□□□□□ -0.03
ZNF558-201ENST00000301475 C11orf95C9JLR9 678 aaPredicted RBP14.88□□□□□ -0.03
ZNF558-201ENST00000301475 ANO8Q9HCE9 1232 aaPredicted RBP14.87□□□□□ -0.03
ZNF558-201ENST00000301475 DENND4BO75064 1496 aaPredicted RBP14.87□□□□□ -0.03
ZNF558-201ENST00000301475 KIF21AQ7Z4S6 1674 aa14.86□□□□□ -0.03
ZNF558-201ENST00000301475 AKNAQ7Z591 1439 aa14.86□□□□□ -0.03
ZNF558-201ENST00000301475 EIF4G2P78344 907 aaKnown RBP eCLIP14.86□□□□□ -0.03
ZNF558-201ENST00000301475 EFCAB5A4FU69 1503 aa14.86□□□□□ -0.03
ZNF558-201ENST00000301475 NCOA1Q15788 1441 aa14.85□□□□□ -0.03
ZNF558-201ENST00000301475 CCDC7Q96M83 1385 aa14.85□□□□□ -0.03
ZNF558-201ENST00000301475 FMN1Q68DA7 1419 aa14.85□□□□□ -0.03
ZNF558-201ENST00000301475 SNAPC4Q5SXM2 1469 aa14.84□□□□□ -0.03
ZNF558-201ENST00000301475 MTUS2Q5JR59 1369 aa14.82□□□□□ -0.04
ZNF558-201ENST00000301475 IPO9Q96P70 1041 aaKnown RBP14.82□□□□□ -0.04
ZNF558-201ENST00000301475 LRRIQ1Q96JM4 1722 aa14.82□□□□□ -0.04
ZNF558-201ENST00000301475 HECW1Q76N89 1606 aa14.82□□□□□ -0.04
ZNF558-201ENST00000301475 ERCC6Q03468 1493 aa14.81□□□□□ -0.04
ZNF558-201ENST00000301475 MYOM3Q5VTT5 1437 aa14.81□□□□□ -0.04
ZNF558-201ENST00000301475 ANP32AP39687 249 aaKnown RBP14.8□□□□□ -0.04
ZNF558-201ENST00000301475 SMG6Q86US8 1419 aaKnown RBP14.8□□□□□ -0.04
ZNF558-201ENST00000301475 ABCA10Q8WWZ4 1543 aa14.8□□□□□ -0.04
ZNF558-201ENST00000301475 SALL2Q9Y467 1007 aaPredicted RBP14.79□□□□□ -0.04
ZNF558-201ENST00000301475 KDM6BO15054 1643 aa14.78□□□□□ -0.04
ZNF558-201ENST00000301475 RTL5Q5HYW3 569 aaPredicted RBP14.78□□□□□ -0.04
ZNF558-201ENST00000301475 CTTNBP2Q8WZ74 1663 aa14.78□□□□□ -0.04
ZNF558-201ENST00000301475 IL27Q8NEV9 243 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms