RNA–Protein interactions for RNA: ENST00000289272.2

PCDHA13-201, Transcript of protocadherin alpha 13, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHA13, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA13-201ENST00000289272 MROH2BQ7Z745 1585 aa23.41■■□□□ 1.34
PCDHA13-201ENST00000289272 TSPY4P0CV99 314 aa23.38■■□□□ 1.33
PCDHA13-201ENST00000289272 TSPY10P0CW01 314 aa23.38■■□□□ 1.33
PCDHA13-201ENST00000289272 SUPT16HQ9Y5B9 1047 aaKnown RBP23.35■■□□□ 1.33
PCDHA13-201ENST00000289272 SOGA1O94964 1423 aa23.35■■□□□ 1.33
PCDHA13-201ENST00000289272 ERICH6BQ5W0A0 696 aa23.33■■□□□ 1.33
PCDHA13-201ENST00000289272 STAG3Q9UJ98 1225 aa23.32■■□□□ 1.32
PCDHA13-201ENST00000289272 FAM9BQ8IZU0 186 aa23.32■■□□□ 1.32
PCDHA13-201ENST00000289272 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
PCDHA13-201ENST00000289272 PPP4R2Q9NY27 417 aa23.27■■□□□ 1.32
PCDHA13-201ENST00000289272 BECN1Q14457 450 aa23.27■■□□□ 1.32
PCDHA13-201ENST00000289272 HSP90AA1P07900 732 aaKnown RBP23.25■■□□□ 1.31
PCDHA13-201ENST00000289272 MRS2Q9HD23 443 aa23.25■■□□□ 1.31
PCDHA13-201ENST00000289272 NOP58Q9Y2X3 529 aaKnown RBP23.23■■□□□ 1.31
PCDHA13-201ENST00000289272 HIRIP3Q9BW71 556 aaPredicted RBP23.22■■□□□ 1.31
PCDHA13-201ENST00000289272 TMC1Q8TDI8 760 aa23.22■■□□□ 1.31
PCDHA13-201ENST00000289272 CHGAP10645 457 aaKnown RBP23.21■■□□□ 1.31
PCDHA13-201ENST00000289272 EIF4G2P78344 907 aaKnown RBP eCLIP23.21■■□□□ 1.31
PCDHA13-201ENST00000289272 RRP7BPQ9NSQ0 103 aa23.2■■□□□ 1.3
PCDHA13-201ENST00000289272 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
PCDHA13-201ENST00000289272 PLEKHD1A6NEE1 506 aa23.18■■□□□ 1.3
PCDHA13-201ENST00000289272 VPS8Q8N3P4 1428 aa23.16■■□□□ 1.3
PCDHA13-201ENST00000289272 TIMELESSQ9UNS1 1208 aa23.14■■□□□ 1.29
PCDHA13-201ENST00000289272 CCNB3Q8WWL7 1395 aa23.13■■□□□ 1.29
PCDHA13-201ENST00000289272 CCER2I3L3R5 266 aa23.13■■□□□ 1.29
PCDHA13-201ENST00000289272 ERCC6Q03468 1493 aa23.12■■□□□ 1.29
PCDHA13-201ENST00000289272 TNNT2P45379 298 aaPredicted RBP23.11■■□□□ 1.29
PCDHA13-201ENST00000289272 TRIM44Q96DX7 344 aaPredicted RBP23.11■■□□□ 1.29
PCDHA13-201ENST00000289272 TOP2AP11388 1531 aaKnown RBP23.1■■□□□ 1.29
PCDHA13-201ENST00000289272 WIZO95785 1651 aa23.1■■□□□ 1.29
PCDHA13-201ENST00000289272 FHAD1B1AJZ9 1412 aa23.09■■□□□ 1.29
PCDHA13-201ENST00000289272 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.08■■□□□ 1.29
PCDHA13-201ENST00000289272 SLC24A1O60721 1099 aa23.07■■□□□ 1.28
PCDHA13-201ENST00000289272 SMARCA2P51531 1590 aa23.06■■□□□ 1.28
PCDHA13-201ENST00000289272 KDM2AQ9Y2K7 1162 aa23.06■■□□□ 1.28
PCDHA13-201ENST00000289272 CARMIL1Q5VZK9 1371 aa23.04■■□□□ 1.28
PCDHA13-201ENST00000289272 CUX2O14529 1486 aa23.03■■□□□ 1.28
PCDHA13-201ENST00000289272 RBM19Q9Y4C8 960 aaKnown RBP23.02■■□□□ 1.28
PCDHA13-201ENST00000289272 DEKP35659 375 aaKnown RBP23.02■■□□□ 1.28
PCDHA13-201ENST00000289272 GOLGA6L22H0YM25 854 aa23.01■■□□□ 1.27
PCDHA13-201ENST00000289272 SALL2Q9Y467 1007 aaPredicted RBP23.01■■□□□ 1.27
PCDHA13-201ENST00000289272 SIN3AQ96ST3 1273 aa23.01■■□□□ 1.27
PCDHA13-201ENST00000289272 WDR43Q15061 677 aaKnown RBP eCLIP22.98■■□□□ 1.27
PCDHA13-201ENST00000289272 IRX6P78412 446 aaPredicted RBP22.97■■□□□ 1.27
PCDHA13-201ENST00000289272 L1TD1Q5T7N2 865 aaKnown RBP22.94■■□□□ 1.26
PCDHA13-201ENST00000289272 CFDP1Q9UEE9 299 aaPredicted RBP22.93■■□□□ 1.26
PCDHA13-201ENST00000289272 TSHZ2Q9NRE2 1034 aa22.9■■□□□ 1.26
PCDHA13-201ENST00000289272 KCNH8Q96L42 1107 aa22.9■■□□□ 1.26
PCDHA13-201ENST00000289272 KANK4Q5T7N3 995 aaPredicted RBP22.89■■□□□ 1.26
PCDHA13-201ENST00000289272 SETD5Q9C0A6 1442 aa22.89■■□□□ 1.25
PCDHA13-201ENST00000289272 PDS5BQ9NTI5 1447 aa22.88■■□□□ 1.25
PCDHA13-201ENST00000289272 NAP1L5Q96NT1 182 aaPredicted RBP22.82■■□□□ 1.24
PCDHA13-201ENST00000289272 CDCA8Q53HL2 280 aa22.81■■□□□ 1.24
PCDHA13-201ENST00000289272 ARHGAP35Q9NRY4 1499 aa22.81■■□□□ 1.24
PCDHA13-201ENST00000289272 SMARCA4P51532 1647 aa22.81■■□□□ 1.24
PCDHA13-201ENST00000289272 NCLP19338 710 aaKnown RBP22.81■■□□□ 1.24
PCDHA13-201ENST00000289272 PPP1R15AO75807 674 aaPredicted RBP22.77■■□□□ 1.24
PCDHA13-201ENST00000289272 PLPPR3Q6T4P5 718 aa22.77■■□□□ 1.24
PCDHA13-201ENST00000289272 CARD11Q9BXL7 1154 aa22.76■■□□□ 1.23
PCDHA13-201ENST00000289272 MYH16Q9H6N6 1097 aa22.75■■□□□ 1.23
PCDHA13-201ENST00000289272 RGL3Q3MIN7 710 aa22.74■■□□□ 1.23
PCDHA13-201ENST00000289272 RAB3GAP2Q9H2M9 1393 aa22.73■■□□□ 1.23
PCDHA13-201ENST00000289272 USP35Q9P2H5 1018 aa22.73■■□□□ 1.23
PCDHA13-201ENST00000289272 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
PCDHA13-201ENST00000289272 PTMSP20962 102 aa22.72■■□□□ 1.23
PCDHA13-201ENST00000289272 RAPGEF2Q9Y4G8 1499 aa22.72■■□□□ 1.23
PCDHA13-201ENST00000289272 ARXQ96QS3 562 aa22.7■■□□□ 1.23
PCDHA13-201ENST00000289272 LAS1LQ9Y4W2 734 aaKnown RBP22.7■■□□□ 1.23
PCDHA13-201ENST00000289272 ATAD2BQ9ULI0 1458 aa22.7■■□□□ 1.22
PCDHA13-201ENST00000289272 CARMIL2Q6F5E8 1435 aa22.69■■□□□ 1.22
PCDHA13-201ENST00000289272 TCERG1O14776 1098 aaKnown RBP22.68■■□□□ 1.22
PCDHA13-201ENST00000289272 FMN1Q68DA7 1419 aa22.68■■□□□ 1.22
PCDHA13-201ENST00000289272 RUSC2Q8N2Y8 1516 aa22.66■■□□□ 1.22
PCDHA13-201ENST00000289272 FANCIQ9NVI1 1328 aa22.64■■□□□ 1.22
PCDHA13-201ENST00000289272 RTN4Q9NQC3 1192 aaKnown RBP22.64■■□□□ 1.21
PCDHA13-201ENST00000289272 MS4A1P11836 297 aa22.63■■□□□ 1.21
PCDHA13-201ENST00000289272 CHMP4BQ9H444 224 aaKnown RBP22.62■■□□□ 1.21
PCDHA13-201ENST00000289272 IPO9Q96P70 1041 aaKnown RBP22.62■■□□□ 1.21
PCDHA13-201ENST00000289272 PTMAP06454 111 aaKnown RBP22.62■■□□□ 1.21
PCDHA13-201ENST00000289272 B4GALNT3Q6L9W6 998 aa22.61■■□□□ 1.21
PCDHA13-201ENST00000289272 KNSTRNQ9Y448 316 aa22.61■■□□□ 1.21
PCDHA13-201ENST00000289272 KANK1Q14678 1352 aa22.6■■□□□ 1.21
PCDHA13-201ENST00000289272 CFAP53Q96M91 514 aa22.59■■□□□ 1.21
PCDHA13-201ENST00000289272 ARID4BQ4LE39 1312 aaPredicted RBP22.59■■□□□ 1.21
PCDHA13-201ENST00000289272 CADPSQ9ULU8 1353 aa22.58■■□□□ 1.21
PCDHA13-201ENST00000289272 HSPA5P11021 654 aaKnown RBP22.58■■□□□ 1.2
PCDHA13-201ENST00000289272 CFAP44Q96MT7 982 aa22.58■■□□□ 1.2
PCDHA13-201ENST00000289272 CASC1Q6TDU7 716 aa22.57■■□□□ 1.2
PCDHA13-201ENST00000289272 RSPH6AQ9H0K4 717 aa22.57■■□□□ 1.2
PCDHA13-201ENST00000289272 SENP3-EIF4A1A0A087X0R7 540 aa22.54■■□□□ 1.2
PCDHA13-201ENST00000289272 DNTTIP2Q5QJE6 756 aaKnown RBP22.53■■□□□ 1.2
PCDHA13-201ENST00000289272 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
PCDHA13-201ENST00000289272 DHX57Q6P158 1386 aaKnown RBP22.52■■□□□ 1.2
PCDHA13-201ENST00000289272 MSNP26038 577 aaKnown RBP22.51■■□□□ 1.19
PCDHA13-201ENST00000289272 HDGFP51858 240 aaKnown RBP22.5■■□□□ 1.19
PCDHA13-201ENST00000289272 CDK11BP21127 795 aaKnown RBP22.49■■□□□ 1.19
PCDHA13-201ENST00000289272 FHOD3Q2V2M9 1422 aa22.49■■□□□ 1.19
PCDHA13-201ENST00000289272 DCAF11Q8TEB1 546 aa22.49■■□□□ 1.19
PCDHA13-201ENST00000289272 C14orf37Q86TY3 774 aa22.48■■□□□ 1.19
PCDHA13-201ENST00000289272 PNNQ9H307 717 aaKnown RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms