RNA–Protein interactions for RNA: ENST00000269571.9

ERBB2-201, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ERBB2, Length 4,545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-201ENST00000269571 CANXP27824 592 aaKnown RBP16.29■□□□□ 0.2
ERBB2-201ENST00000269571 B4GALNT3Q6L9W6 998 aa16.29■□□□□ 0.2
ERBB2-201ENST00000269571 TMC1Q8TDI8 760 aa16.27■□□□□ 0.2
ERBB2-201ENST00000269571 CHMP7Q8WUX9 453 aaPredicted RBP16.27■□□□□ 0.2
ERBB2-201ENST00000269571 CCDC88BA6NC98 1476 aa16.25■□□□□ 0.19
ERBB2-201ENST00000269571 EEA1Q15075 1411 aa16.25■□□□□ 0.19
ERBB2-201ENST00000269571 SOGA1O94964 1423 aa16.25■□□□□ 0.19
ERBB2-201ENST00000269571 ERICH6BQ5W0A0 696 aa16.24■□□□□ 0.19
ERBB2-201ENST00000269571 GOLGA3Q08378 1498 aa16.24■□□□□ 0.19
ERBB2-201ENST00000269571 KCNH8Q96L42 1107 aa16.24■□□□□ 0.19
ERBB2-201ENST00000269571 LAS1LQ9Y4W2 734 aaKnown RBP16.24■□□□□ 0.19
ERBB2-201ENST00000269571 NOP58Q9Y2X3 529 aaKnown RBP16.21■□□□□ 0.19
ERBB2-201ENST00000269571 TNIKQ9UKE5 1360 aa16.2■□□□□ 0.18
ERBB2-201ENST00000269571 KIF27Q86VH2 1401 aa16.2■□□□□ 0.18
ERBB2-201ENST00000269571 NEFMP07197 916 aa16.2■□□□□ 0.18
ERBB2-201ENST00000269571 ANO8Q9HCE9 1232 aaPredicted RBP16.2■□□□□ 0.18
ERBB2-201ENST00000269571 MTUS2Q5JR59 1369 aa16.18■□□□□ 0.18
ERBB2-201ENST00000269571 ABCC8Q09428 1581 aa16.18■□□□□ 0.18
ERBB2-201ENST00000269571 WIZO95785 1651 aa16.18■□□□□ 0.18
ERBB2-201ENST00000269571 PPP4R2Q9NY27 417 aa16.16■□□□□ 0.18
ERBB2-201ENST00000269571 EIF4G2P78344 907 aaKnown RBP eCLIP16.16■□□□□ 0.18
ERBB2-201ENST00000269571 RRP7BPQ9NSQ0 103 aa16.15■□□□□ 0.18
ERBB2-201ENST00000269571 CEP164Q9UPV0 1460 aa16.13■□□□□ 0.17
ERBB2-201ENST00000269571 SLC24A1O60721 1099 aa16.13■□□□□ 0.17
ERBB2-201ENST00000269571 KDM2AQ9Y2K7 1162 aa16.11■□□□□ 0.17
ERBB2-201ENST00000269571 CHGAP10645 457 aaKnown RBP16.08■□□□□ 0.16
ERBB2-201ENST00000269571 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.07■□□□□ 0.16
ERBB2-201ENST00000269571 CUX2O14529 1486 aa16.06■□□□□ 0.16
ERBB2-201ENST00000269571 SMARCA2P51531 1590 aa16.04■□□□□ 0.16
ERBB2-201ENST00000269571 NPM1P06748 294 aaKnown RBP eCLIP16.04■□□□□ 0.16
ERBB2-201ENST00000269571 HSP90AA1P07900 732 aaKnown RBP16.03■□□□□ 0.16
ERBB2-201ENST00000269571 KANK4Q5T7N3 995 aaPredicted RBP16.03■□□□□ 0.16
ERBB2-201ENST00000269571 CARMIL1Q5VZK9 1371 aa16.02■□□□□ 0.16
ERBB2-201ENST00000269571 PPM1GO15355 546 aaPredicted RBP16.02■□□□□ 0.16
ERBB2-201ENST00000269571 UPF2Q9HAU5 1272 aaKnown RBP16.02■□□□□ 0.15
ERBB2-201ENST00000269571 NAP1L5Q96NT1 182 aaPredicted RBP16.01■□□□□ 0.15
ERBB2-201ENST00000269571 ERCC6Q03468 1493 aa16.01■□□□□ 0.15
ERBB2-201ENST00000269571 TOP2AP11388 1531 aaKnown RBP16.01■□□□□ 0.15
ERBB2-201ENST00000269571 ATAD2BQ9ULI0 1458 aa16■□□□□ 0.15
ERBB2-201ENST00000269571 TSPY4P0CV99 314 aa16■□□□□ 0.15
ERBB2-201ENST00000269571 TSPY10P0CW01 314 aa16■□□□□ 0.15
ERBB2-201ENST00000269571 CCER2I3L3R5 266 aa15.96■□□□□ 0.15
ERBB2-201ENST00000269571 PKNOX2Q96KN3 472 aa15.96■□□□□ 0.14
ERBB2-201ENST00000269571 TDRD9Q8NDG6 1382 aaKnown RBP15.96■□□□□ 0.14
ERBB2-201ENST00000269571 PLEKHD1A6NEE1 506 aa15.95■□□□□ 0.14
ERBB2-201ENST00000269571 SMARCA4P51532 1647 aa15.94■□□□□ 0.14
ERBB2-201ENST00000269571 CCNB3Q8WWL7 1395 aa15.94■□□□□ 0.14
ERBB2-201ENST00000269571 RGS3P49796 1198 aa15.94■□□□□ 0.14
ERBB2-201ENST00000269571 ANP32BQ92688 251 aaKnown RBP15.94■□□□□ 0.14
ERBB2-201ENST00000269571 VSIG10Q8N0Z9 540 aa15.94■□□□□ 0.14
ERBB2-201ENST00000269571 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.93■□□□□ 0.14
ERBB2-201ENST00000269571 DDRGK1Q96HY6 314 aa15.93■□□□□ 0.14
ERBB2-201ENST00000269571 WDR43Q15061 677 aaKnown RBP eCLIP15.92■□□□□ 0.141e-5■■■■□ 24.6
ERBB2-201ENST00000269571 CADPSQ9ULU8 1353 aa15.9■□□□□ 0.14
ERBB2-201ENST00000269571 SENP3Q9H4L4 574 aaPredicted RBP15.89■□□□□ 0.13
ERBB2-201ENST00000269571 PLPPR3Q6T4P5 718 aa15.89■□□□□ 0.13
ERBB2-201ENST00000269571 CFDP1Q9UEE9 299 aaPredicted RBP15.88■□□□□ 0.13
ERBB2-201ENST00000269571 FANCIQ9NVI1 1328 aa15.88■□□□□ 0.13
ERBB2-201ENST00000269571 RGL3Q3MIN7 710 aa15.87■□□□□ 0.13
ERBB2-201ENST00000269571 RUSC2Q8N2Y8 1516 aa15.87■□□□□ 0.13
ERBB2-201ENST00000269571 STAG3Q9UJ98 1225 aa15.86■□□□□ 0.13
ERBB2-201ENST00000269571 HSPA5P11021 654 aaKnown RBP15.86■□□□□ 0.13
ERBB2-201ENST00000269571 VPS8Q8N3P4 1428 aa15.85■□□□□ 0.13
ERBB2-201ENST00000269571 PDS5BQ9NTI5 1447 aa15.84■□□□□ 0.13
ERBB2-201ENST00000269571 EIF4G1Q04637 1599 aaKnown RBP15.84■□□□□ 0.13
ERBB2-201ENST00000269571 RSPH6AQ9H0K4 717 aa15.83■□□□□ 0.13
ERBB2-201ENST00000269571 RAB3GAP2Q9H2M9 1393 aa15.83■□□□□ 0.12
ERBB2-201ENST00000269571 TNNT2P45379 298 aaPredicted RBP15.83■□□□□ 0.12
ERBB2-201ENST00000269571 PODXL2Q9NZ53 605 aa15.82■□□□□ 0.12
ERBB2-201ENST00000269571 ESF1Q9H501 851 aaKnown RBP15.82■□□□□ 0.12
ERBB2-201ENST00000269571 FOXD1Q16676 465 aa15.81■□□□□ 0.12
ERBB2-201ENST00000269571 PPP1R15AO75807 674 aaPredicted RBP15.8■□□□□ 0.12
ERBB2-201ENST00000269571 TIMELESSQ9UNS1 1208 aa15.8■□□□□ 0.12
ERBB2-201ENST00000269571 BECN1Q14457 450 aa15.8■□□□□ 0.12
ERBB2-201ENST00000269571 TRIM44Q96DX7 344 aaPredicted RBP15.8■□□□□ 0.12
ERBB2-201ENST00000269571 DHX57Q6P158 1386 aaKnown RBP15.8■□□□□ 0.12
ERBB2-201ENST00000269571 ARID4BQ4LE39 1312 aaPredicted RBP15.79■□□□□ 0.12
ERBB2-201ENST00000269571 CARD11Q9BXL7 1154 aa15.78■□□□□ 0.12
ERBB2-201ENST00000269571 FHAD1B1AJZ9 1412 aa15.78■□□□□ 0.12
ERBB2-201ENST00000269571 IPO9Q96P70 1041 aaKnown RBP15.78■□□□□ 0.12
ERBB2-201ENST00000269571 RAPGEF2Q9Y4G8 1499 aa15.77■□□□□ 0.12
ERBB2-201ENST00000269571 UBE2Q2Q8WVN8 375 aa15.77■□□□□ 0.11
ERBB2-201ENST00000269571 SETD5Q9C0A6 1442 aa15.76■□□□□ 0.11
ERBB2-201ENST00000269571 NEUROD2Q15784 382 aa15.76■□□□□ 0.11
ERBB2-201ENST00000269571 HSP90AA2PQ14568 343 aaPredicted RBP15.75■□□□□ 0.11
ERBB2-201ENST00000269571 CC2D1BQ5T0F9 858 aaKnown RBP15.75■□□□□ 0.11
ERBB2-201ENST00000269571 IL27Q8NEV9 243 aa15.75■□□□□ 0.11
ERBB2-201ENST00000269571 SPRYD3Q8NCJ5 442 aa15.74■□□□□ 0.11
ERBB2-201ENST00000269571 PNNQ9H307 717 aaKnown RBP15.73■□□□□ 0.11
ERBB2-201ENST00000269571 NCLP19338 710 aaKnown RBP15.7■□□□□ 0.1
ERBB2-201ENST00000269571 FRAT1Q92837 279 aaPredicted RBP15.7■□□□□ 0.1
ERBB2-201ENST00000269571 SLC4A3P48751 1232 aa15.7■□□□□ 0.1
ERBB2-201ENST00000269571 FANCD2Q9BXW9 1451 aa15.68■□□□□ 0.1
ERBB2-201ENST00000269571 SLKQ9H2G2 1235 aaPredicted RBP15.67■□□□□ 0.1
ERBB2-201ENST00000269571 USP35Q9P2H5 1018 aa15.67■□□□□ 0.1
ERBB2-201ENST00000269571 FHOD3Q2V2M9 1422 aa15.66■□□□□ 0.1
ERBB2-201ENST00000269571 GZF1Q9H116 711 aaPredicted RBP15.66■□□□□ 0.1
ERBB2-201ENST00000269571 A0A0U1RQG5 324 aaPredicted RBP15.66■□□□□ 0.1
ERBB2-201ENST00000269571 TPRNQ4KMQ1 711 aa15.66■□□□□ 0.1
ERBB2-201ENST00000269571 RCAN3Q9UKA8 241 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms