RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 SIN3AQ96ST3 1273 aa15.72■□□□□ 0.11
VPS33A-201ENST00000267199 RRP7BPQ9NSQ0 103 aa15.71■□□□□ 0.11
VPS33A-201ENST00000267199 SENP3-EIF4A1A0A087X0R7 540 aa15.7■□□□□ 0.1
VPS33A-201ENST00000267199 KANK4Q5T7N3 995 aaPredicted RBP15.69■□□□□ 0.1
VPS33A-201ENST00000267199 MRS2Q9HD23 443 aa15.68■□□□□ 0.1
VPS33A-201ENST00000267199 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
VPS33A-201ENST00000267199 TOP2AP11388 1531 aaKnown RBP15.68■□□□□ 0.1
VPS33A-201ENST00000267199 RUSC2Q8N2Y8 1516 aa15.65■□□□□ 0.1
VPS33A-201ENST00000267199 TSHZ2Q9NRE2 1034 aa15.65■□□□□ 0.1
VPS33A-201ENST00000267199 RBM19Q9Y4C8 960 aaKnown RBP15.63■□□□□ 0.09
VPS33A-201ENST00000267199 EIF4G2P78344 907 aaKnown RBP eCLIP15.62■□□□□ 0.096e-9■■■■■ 37.6
VPS33A-201ENST00000267199 RTN4Q9NQC3 1192 aaKnown RBP15.6■□□□□ 0.09
VPS33A-201ENST00000267199 ARXQ96QS3 562 aa15.59■□□□□ 0.09
VPS33A-201ENST00000267199 CANXP27824 592 aaKnown RBP15.59■□□□□ 0.09
VPS33A-201ENST00000267199 CUX2O14529 1486 aa15.58■□□□□ 0.08
VPS33A-201ENST00000267199 CARMIL1Q5VZK9 1371 aa15.58■□□□□ 0.08
VPS33A-201ENST00000267199 TMC1Q8TDI8 760 aa15.56■□□□□ 0.08
VPS33A-201ENST00000267199 KDM2AQ9Y2K7 1162 aa15.55■□□□□ 0.08
VPS33A-201ENST00000267199 RAPGEF2Q9Y4G8 1499 aa15.54■□□□□ 0.08
VPS33A-201ENST00000267199 B4GALNT3Q6L9W6 998 aa15.53■□□□□ 0.08
VPS33A-201ENST00000267199 SMARCA4P51532 1647 aa15.52■□□□□ 0.08
VPS33A-201ENST00000267199 FHAD1B1AJZ9 1412 aa15.51■□□□□ 0.07
VPS33A-201ENST00000267199 TSPY4P0CV99 314 aa15.51■□□□□ 0.07
VPS33A-201ENST00000267199 TSPY10P0CW01 314 aa15.51■□□□□ 0.07
VPS33A-201ENST00000267199 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.49■□□□□ 0.07
VPS33A-201ENST00000267199 SMARCA2P51531 1590 aa15.49■□□□□ 0.07
VPS33A-201ENST00000267199 SETD5Q9C0A6 1442 aa15.49■□□□□ 0.07
VPS33A-201ENST00000267199 RAB3GAP2Q9H2M9 1393 aa15.48■□□□□ 0.07
VPS33A-201ENST00000267199 DEKP35659 375 aaKnown RBP15.48■□□□□ 0.07
VPS33A-201ENST00000267199 LAS1LQ9Y4W2 734 aaKnown RBP15.47■□□□□ 0.07
VPS33A-201ENST00000267199 CHMP7Q8WUX9 453 aaPredicted RBP15.46■□□□□ 0.07
VPS33A-201ENST00000267199 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.07
VPS33A-201ENST00000267199 PPP4R2Q9NY27 417 aa15.45■□□□□ 0.06
VPS33A-201ENST00000267199 TIMELESSQ9UNS1 1208 aa15.45■□□□□ 0.06
VPS33A-201ENST00000267199 KCNH8Q96L42 1107 aa15.44■□□□□ 0.06
VPS33A-201ENST00000267199 ATAD2BQ9ULI0 1458 aa15.43■□□□□ 0.06
VPS33A-201ENST00000267199 DHX57Q6P158 1386 aaKnown RBP15.41■□□□□ 0.06
VPS33A-201ENST00000267199 CFDP1Q9UEE9 299 aaPredicted RBP15.4■□□□□ 0.06
VPS33A-201ENST00000267199 NEFMP07197 916 aa15.38■□□□□ 0.05
VPS33A-201ENST00000267199 ARHGAP35Q9NRY4 1499 aa15.37■□□□□ 0.05
VPS33A-201ENST00000267199 CCER2I3L3R5 266 aa15.36■□□□□ 0.05
VPS33A-201ENST00000267199 PLEKHD1A6NEE1 506 aa15.36■□□□□ 0.05
VPS33A-201ENST00000267199 CHGAP10645 457 aaKnown RBP15.36■□□□□ 0.05
VPS33A-201ENST00000267199 RGL3Q3MIN7 710 aa15.36■□□□□ 0.05
VPS33A-201ENST00000267199 GLIPR1L2Q4G1C9 344 aa15.36■□□□□ 0.05
VPS33A-201ENST00000267199 PPP1R15AO75807 674 aaPredicted RBP15.35■□□□□ 0.05
VPS33A-201ENST00000267199 UPF2Q9HAU5 1272 aaKnown RBP15.34■□□□□ 0.05
VPS33A-201ENST00000267199 HSP90AA1P07900 732 aaKnown RBP15.33■□□□□ 0.05
VPS33A-201ENST00000267199 HSPA5P11021 654 aaKnown RBP15.32■□□□□ 0.04
VPS33A-201ENST00000267199 CARD11Q9BXL7 1154 aa15.31■□□□□ 0.04
VPS33A-201ENST00000267199 FOXD1Q16676 465 aa15.31■□□□□ 0.04
VPS33A-201ENST00000267199 WDR43Q15061 677 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS33A-201ENST00000267199 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
VPS33A-201ENST00000267199 FHOD3Q2V2M9 1422 aa15.29■□□□□ 0.04
VPS33A-201ENST00000267199 EIF4G1Q04637 1599 aaKnown RBP15.29■□□□□ 0.04
VPS33A-201ENST00000267199 ANP32BQ92688 251 aaKnown RBP15.27■□□□□ 0.04
VPS33A-201ENST00000267199 PPM1GO15355 546 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-201ENST00000267199 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-201ENST00000267199 DDRGK1Q96HY6 314 aa15.26■□□□□ 0.03
VPS33A-201ENST00000267199 CADPSQ9ULU8 1353 aa15.26■□□□□ 0.03
VPS33A-201ENST00000267199 FMN1Q68DA7 1419 aa15.25■□□□□ 0.03
VPS33A-201ENST00000267199 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.25■□□□□ 0.03
VPS33A-201ENST00000267199 MPHOSPH9Q99550 1183 aa15.22■□□□□ 0.03
VPS33A-201ENST00000267199 RGS3P49796 1198 aa15.21■□□□□ 0.03
VPS33A-201ENST00000267199 KIF21BO75037 1637 aa15.21■□□□□ 0.03
VPS33A-201ENST00000267199 DCAF11Q8TEB1 546 aa15.18■□□□□ 0.02
VPS33A-201ENST00000267199 L3MBTL2Q969R5 705 aa15.18■□□□□ 0.02
VPS33A-201ENST00000267199 IGF1RP08069 1367 aa15.16■□□□□ 0.02
VPS33A-201ENST00000267199 PKD2Q13563 968 aa15.16■□□□□ 0.02
VPS33A-201ENST00000267199 ERICH6BQ5W0A0 696 aa15.16■□□□□ 0.02
VPS33A-201ENST00000267199 SYNJ1O43426 1573 aa15.15■□□□□ 0.02
VPS33A-201ENST00000267199 SLC24A1O60721 1099 aa15.14■□□□□ 0.01
VPS33A-201ENST00000267199 BECN1Q14457 450 aa15.14■□□□□ 0.01
VPS33A-201ENST00000267199 NPM1P06748 294 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS33A-201ENST00000267199 KNSTRNQ9Y448 316 aa15.13■□□□□ 0.01
VPS33A-201ENST00000267199 NAP1L5Q96NT1 182 aaPredicted RBP15.12■□□□□ 0.01
VPS33A-201ENST00000267199 CC2D1BQ5T0F9 858 aaKnown RBP15.12■□□□□ 0.01
VPS33A-201ENST00000267199 TRIM44Q96DX7 344 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-201ENST00000267199 ARAP1Q96P48 1450 aa15.1■□□□□ 0.01
VPS33A-201ENST00000267199 STAG3Q9UJ98 1225 aa15.1■□□□□ 0.01
VPS33A-201ENST00000267199 SENP3Q9H4L4 574 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-201ENST00000267199 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
VPS33A-201ENST00000267199 PHLDB1Q86UU1 1377 aa15.09■□□□□ 0.01
VPS33A-201ENST00000267199 IPO9Q96P70 1041 aaKnown RBP15.08■□□□□ 0
VPS33A-201ENST00000267199 FGD5Q6ZNL6 1462 aa15.06■□□□□ 0
VPS33A-201ENST00000267199 CDCA8Q53HL2 280 aa15.06■□□□□ 0
VPS33A-201ENST00000267199 FANCD2Q9BXW9 1451 aa15.06■□□□□ 0
VPS33A-201ENST00000267199 CCDC18Q5T9S5 1454 aa15.05■□□□□ -0
VPS33A-201ENST00000267199 NUP155O75694 1391 aa15.04■□□□□ -0
VPS33A-201ENST00000267199 NEUROD2Q15784 382 aa15.03■□□□□ -0
VPS33A-201ENST00000267199 ERCC6Q03468 1493 aa15.03■□□□□ -0
VPS33A-201ENST00000267199 ARID4BQ4LE39 1312 aaPredicted RBP15.01□□□□□ -0.01
VPS33A-201ENST00000267199 RRBP1Q9P2E9 1410 aaKnown RBP15.01□□□□□ -0.01
VPS33A-201ENST00000267199 TMF1P82094 1093 aa15.01□□□□□ -0.01
VPS33A-201ENST00000267199 LRRC9Q6ZRR7 1453 aa15.01□□□□□ -0.01
VPS33A-201ENST00000267199 PRXQ9BXM0 1461 aa15.01□□□□□ -0.01
VPS33A-201ENST00000267199 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
VPS33A-201ENST00000267199 FANCIQ9NVI1 1328 aa15□□□□□ -0.01
VPS33A-201ENST00000267199 ERICH3Q5RHP9 1530 aa15□□□□□ -0.01
VPS33A-201ENST00000267199 RAD54L2Q9Y4B4 1467 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms