RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 NISCHQ9Y2I1 1504 aa20.6■□□□□ 0.89
VPS33A-201ENST00000267199 DCAF8L2P0C7V8 631 aa19.83■□□□□ 0.77
VPS33A-201ENST00000267199 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
VPS33A-201ENST00000267199 SHROOM4Q9ULL8 1493 aa19.3■□□□□ 0.68
VPS33A-201ENST00000267199 PCGF6Q9BYE7 350 aa18.62■□□□□ 0.57
VPS33A-201ENST00000267199 EHMT2Q96KQ7 1210 aa18.54■□□□□ 0.56
VPS33A-201ENST00000267199 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
VPS33A-201ENST00000267199 HRCP23327 699 aa18.05■□□□□ 0.48
VPS33A-201ENST00000267199 PELP1Q8IZL8 1130 aaKnown RBP18.02■□□□□ 0.48
VPS33A-201ENST00000267199 TTBK1Q5TCY1 1321 aaPredicted RBP17.99■□□□□ 0.47
VPS33A-201ENST00000267199 TRIM41Q8WV44 630 aa17.95■□□□□ 0.46
VPS33A-201ENST00000267199 PPARGC1BQ86YN6 1023 aaKnown RBP17.92■□□□□ 0.46
VPS33A-201ENST00000267199 CHIC1Q5VXU3 224 aa17.89■□□□□ 0.45
VPS33A-201ENST00000267199 ZEB1P37275 1124 aaPredicted RBP17.85■□□□□ 0.45
VPS33A-201ENST00000267199 CENPBP07199 599 aaPredicted RBP17.84■□□□□ 0.45
VPS33A-201ENST00000267199 CCER1Q8TC90 406 aaPredicted RBP17.77■□□□□ 0.44
VPS33A-201ENST00000267199 LOC105371045A0A1W2PR82 267 aa17.74■□□□□ 0.43
VPS33A-201ENST00000267199 APLP2Q06481 763 aa17.7■□□□□ 0.42
VPS33A-201ENST00000267199 YTHDC1Q96MU7 727 aaKnown RBP17.67■□□□□ 0.42
VPS33A-201ENST00000267199 TRIM26Q12899 539 aaPredicted RBP17.63■□□□□ 0.41
VPS33A-201ENST00000267199 MYT1Q01538 1121 aa17.53■□□□□ 0.4
VPS33A-201ENST00000267199 RANGAP1P46060 587 aaPredicted RBP17.52■□□□□ 0.4
VPS33A-201ENST00000267199 UBTFP17480 764 aaKnown RBP17.5■□□□□ 0.39
VPS33A-201ENST00000267199 ERICH6Q7L0X2 663 aa17.29■□□□□ 0.36
VPS33A-201ENST00000267199 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.22■□□□□ 0.35
VPS33A-201ENST00000267199 ZCCHC6Q5VYS8 1495 aaKnown RBP17.19■□□□□ 0.34
VPS33A-201ENST00000267199 DIEXFQ68CQ4 756 aaKnown RBP17.14■□□□□ 0.34
VPS33A-201ENST00000267199 GTF3C3Q9Y5Q9 886 aa17.14■□□□□ 0.33
VPS33A-201ENST00000267199 ATP1B4Q9UN42 357 aaPredicted RBP17.11■□□□□ 0.33
VPS33A-201ENST00000267199 NEFLP07196 543 aa17.09■□□□□ 0.33
VPS33A-201ENST00000267199 ABCC9O60706 1549 aa17.07■□□□□ 0.32
VPS33A-201ENST00000267199 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
VPS33A-201ENST00000267199 ACIN1Q9UKV3 1341 aaKnown RBP16.93■□□□□ 0.3
VPS33A-201ENST00000267199 ITGAEP38570 1179 aa16.91■□□□□ 0.3
VPS33A-201ENST00000267199 MYO15BQ96JP2 1530 aa16.9■□□□□ 0.3
VPS33A-201ENST00000267199 CCDC180Q9P1Z9 1646 aa16.86■□□□□ 0.29
VPS33A-201ENST00000267199 PABPN1Q86U42 306 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS33A-201ENST00000267199 DCAF1Q9Y4B6 1507 aa16.84■□□□□ 0.29
VPS33A-201ENST00000267199 SCAF1Q9H7N4 1312 aaKnown RBP16.84■□□□□ 0.29
VPS33A-201ENST00000267199 SCRIBQ14160 1630 aa16.77■□□□□ 0.28
VPS33A-201ENST00000267199 BCANQ96GW7 911 aa16.75■□□□□ 0.27
VPS33A-201ENST00000267199 NEUROD1Q13562 356 aa16.74■□□□□ 0.27
VPS33A-201ENST00000267199 CSRNP3Q8WYN3 585 aa16.67■□□□□ 0.26
VPS33A-201ENST00000267199 ZNF316A6NFI3 1004 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-201ENST00000267199 CNGB1Q14028 1251 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-201ENST00000267199 RSF1Q96T23 1441 aaPredicted RBP16.56■□□□□ 0.24
VPS33A-201ENST00000267199 FAM50AQ14320 339 aaKnown RBP16.5■□□□□ 0.23
VPS33A-201ENST00000267199 POLR3GLQ9BT43 218 aa16.5■□□□□ 0.23
VPS33A-201ENST00000267199 RTL5Q5HYW3 569 aaPredicted RBP16.37■□□□□ 0.21
VPS33A-201ENST00000267199 DAXXQ9UER7 740 aaPredicted RBP16.34■□□□□ 0.21
VPS33A-201ENST00000267199 MIER1Q8N108 512 aa16.33■□□□□ 0.2
VPS33A-201ENST00000267199 P3H3Q8IVL6 736 aa16.29■□□□□ 0.2
VPS33A-201ENST00000267199 FKBP8Q14318 412 aa16.28■□□□□ 0.2
VPS33A-201ENST00000267199 CDK11AQ9UQ88 783 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-201ENST00000267199 ANP32CO43423 234 aa16.25■□□□□ 0.19
VPS33A-201ENST00000267199 TRIM52Q96A61 297 aa16.24■□□□□ 0.19
VPS33A-201ENST00000267199 CECR2Q9BXF3 1484 aa16.24■□□□□ 0.19
VPS33A-201ENST00000267199 CEP162Q5TB80 1403 aa16.22■□□□□ 0.19
VPS33A-201ENST00000267199 RB1CC1Q8TDY2 1594 aa16.21■□□□□ 0.19
VPS33A-201ENST00000267199 CLIP1P30622 1438 aa16.17■□□□□ 0.18
VPS33A-201ENST00000267199 NACADO15069 1562 aa16.16■□□□□ 0.18
VPS33A-201ENST00000267199 EEA1Q15075 1411 aa16.11■□□□□ 0.17
VPS33A-201ENST00000267199 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
VPS33A-201ENST00000267199 TNIKQ9UKE5 1360 aa16.09■□□□□ 0.17
VPS33A-201ENST00000267199 GOLGA3Q08378 1498 aa16.09■□□□□ 0.17
VPS33A-201ENST00000267199 CLSPNQ9HAW4 1339 aa16.09■□□□□ 0.17
VPS33A-201ENST00000267199 WRNQ14191 1432 aaPredicted RBP eCLIP16.08■□□□□ 0.16
VPS33A-201ENST00000267199 ARID3CA6NKF2 412 aa16.06■□□□□ 0.16
VPS33A-201ENST00000267199 MROH2BQ7Z745 1585 aa16.05■□□□□ 0.16
VPS33A-201ENST00000267199 ZNF326Q5BKZ1 582 aaKnown RBP16.04■□□□□ 0.16
VPS33A-201ENST00000267199 MYT1LQ9UL68 1186 aa16.03■□□□□ 0.16
VPS33A-201ENST00000267199 BAZ1AQ9NRL2 1556 aaPredicted RBP16.03■□□□□ 0.16
VPS33A-201ENST00000267199 SOGA1O94964 1423 aa16.01■□□□□ 0.15
VPS33A-201ENST00000267199 HNRNPUQ00839 825 aaKnown RBP eCLIP16■□□□□ 0.15
VPS33A-201ENST00000267199 ANP32EQ9BTT0 268 aa16■□□□□ 0.15
VPS33A-201ENST00000267199 IRX6P78412 446 aaPredicted RBP15.99■□□□□ 0.15
VPS33A-201ENST00000267199 NPM2Q86SE8 214 aaKnown RBP15.99■□□□□ 0.15
VPS33A-201ENST00000267199 NBR1Q14596 966 aa15.97■□□□□ 0.15
VPS33A-201ENST00000267199 HIRIP3Q9BW71 556 aaPredicted RBP15.96■□□□□ 0.15
VPS33A-201ENST00000267199 TONSLQ96HA7 1378 aa15.95■□□□□ 0.14
VPS33A-201ENST00000267199 ANP32AP39687 249 aaKnown RBP15.95■□□□□ 0.14
VPS33A-201ENST00000267199 CEP164Q9UPV0 1460 aa15.94■□□□□ 0.14
VPS33A-201ENST00000267199 FBLN2P98095 1184 aa15.92■□□□□ 0.14
VPS33A-201ENST00000267199 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
VPS33A-201ENST00000267199 EIF5BO60841 1220 aaKnown RBP15.91■□□□□ 0.14
VPS33A-201ENST00000267199 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
VPS33A-201ENST00000267199 SUPT16HQ9Y5B9 1047 aaKnown RBP15.89■□□□□ 0.13
VPS33A-201ENST00000267199 BAZ1BQ9UIG0 1483 aaKnown RBP15.89■□□□□ 0.13
VPS33A-201ENST00000267199 FAM9BQ8IZU0 186 aa15.88■□□□□ 0.13
VPS33A-201ENST00000267199 CHIC2Q9UKJ5 165 aa15.86■□□□□ 0.13
VPS33A-201ENST00000267199 WIZO95785 1651 aa15.84■□□□□ 0.13
VPS33A-201ENST00000267199 ZNF777Q9ULD5 760 aaPredicted RBP15.84■□□□□ 0.13
VPS33A-201ENST00000267199 BCL11AQ9H165 835 aa15.82■□□□□ 0.12
VPS33A-201ENST00000267199 MTUS2Q5JR59 1369 aa15.8■□□□□ 0.12
VPS33A-201ENST00000267199 KIF27Q86VH2 1401 aa15.8■□□□□ 0.12
VPS33A-201ENST00000267199 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
VPS33A-201ENST00000267199 SALL2Q9Y467 1007 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-201ENST00000267199 VPS8Q8N3P4 1428 aa15.74■□□□□ 0.11
VPS33A-201ENST00000267199 CCDC136Q96JN2 1154 aa15.74■□□□□ 0.11
VPS33A-201ENST00000267199 ZBTB47Q9UFB7 747 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms