RNA–Protein interactions for RNA: ENST00000264107.11

ITGA6-201, Transcript of integrin subunit alpha 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ITGA6, Length 5,618 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA6-201ENST00000264107 CCDC180Q9P1Z9 1646 aa23.85■■□□□ 1.41
ITGA6-201ENST00000264107 TMC1Q8TDI8 760 aa23.85■■□□□ 1.41
ITGA6-201ENST00000264107 GOLGA6L22H0YM25 854 aa23.84■■□□□ 1.41
ITGA6-201ENST00000264107 VSIG10Q8N0Z9 540 aa23.81■■□□□ 1.4
ITGA6-201ENST00000264107 L1TD1Q5T7N2 865 aaKnown RBP23.8■■□□□ 1.4
ITGA6-201ENST00000264107 PNNQ9H307 717 aaKnown RBP23.75■■□□□ 1.39
ITGA6-201ENST00000264107 B4GALNT3Q6L9W6 998 aa23.73■■□□□ 1.39
ITGA6-201ENST00000264107 HIRIP3Q9BW71 556 aaPredicted RBP23.72■■□□□ 1.39
ITGA6-201ENST00000264107 RSPH6AQ9H0K4 717 aa23.69■■□□□ 1.38
ITGA6-201ENST00000264107 HSP90AA2PQ14568 343 aaPredicted RBP23.68■■□□□ 1.38
ITGA6-201ENST00000264107 MYO15BQ96JP2 1530 aa23.66■■□□□ 1.38
ITGA6-201ENST00000264107 MSNP26038 577 aaKnown RBP23.65■■□□□ 1.38
ITGA6-201ENST00000264107 ARID3AQ99856 593 aa23.59■■□□□ 1.37
ITGA6-201ENST00000264107 SLC24A1O60721 1099 aa23.55■■□□□ 1.36
ITGA6-201ENST00000264107 PKNOX2Q96KN3 472 aa23.54■■□□□ 1.36
ITGA6-201ENST00000264107 WDR43Q15061 677 aaKnown RBP eCLIP23.5■■□□□ 1.35
ITGA6-201ENST00000264107 ANO8Q9HCE9 1232 aaPredicted RBP23.5■■□□□ 1.35
ITGA6-201ENST00000264107 CHAF1AQ13111 956 aaPredicted RBP23.47■■□□□ 1.35
ITGA6-201ENST00000264107 IPO9Q96P70 1041 aaKnown RBP23.47■■□□□ 1.35
ITGA6-201ENST00000264107 RGS3P49796 1198 aa23.46■■□□□ 1.35
ITGA6-201ENST00000264107 TIMELESSQ9UNS1 1208 aa23.46■■□□□ 1.35
ITGA6-201ENST00000264107 SENP3-EIF4A1A0A087X0R7 540 aa23.44■■□□□ 1.34
ITGA6-201ENST00000264107 TNNT3P45378 269 aaPredicted RBP23.44■■□□□ 1.34
ITGA6-201ENST00000264107 PLCB2Q00722 1185 aa23.42■■□□□ 1.34
ITGA6-201ENST00000264107 EIF4G2P78344 907 aaKnown RBP eCLIP23.39■■□□□ 1.34
ITGA6-201ENST00000264107 PODXL2Q9NZ53 605 aa23.39■■□□□ 1.33
ITGA6-201ENST00000264107 ZCCHC6Q5VYS8 1495 aaKnown RBP23.37■■□□□ 1.33
ITGA6-201ENST00000264107 A0A0U1RQG5 324 aaPredicted RBP23.36■■□□□ 1.33
ITGA6-201ENST00000264107 USP35Q9P2H5 1018 aa23.35■■□□□ 1.33
ITGA6-201ENST00000264107 TPRNQ4KMQ1 711 aa23.34■■□□□ 1.33
ITGA6-201ENST00000264107 MYH16Q9H6N6 1097 aa23.33■■□□□ 1.33
ITGA6-201ENST00000264107 HSP90AB1P08238 724 aaKnown RBP23.32■■□□□ 1.32
ITGA6-201ENST00000264107 GZF1Q9H116 711 aaPredicted RBP23.32■■□□□ 1.32
ITGA6-201ENST00000264107 GOLGA6L3A6NEY3 463 aa23.32■■□□□ 1.32
ITGA6-201ENST00000264107 P3H3Q8IVL6 736 aa23.28■■□□□ 1.32
ITGA6-201ENST00000264107 FANCIQ9NVI1 1328 aa23.27■■□□□ 1.32
ITGA6-201ENST00000264107 ZBTB7CA1YPR0 619 aa23.27■■□□□ 1.32
ITGA6-201ENST00000264107 GSE1Q14687 1217 aa23.26■■□□□ 1.31
ITGA6-201ENST00000264107 CCER2I3L3R5 266 aa23.26■■□□□ 1.31
ITGA6-201ENST00000264107 SPRYD3Q8NCJ5 442 aa23.26■■□□□ 1.31
ITGA6-201ENST00000264107 HSCBQ8IWL3 235 aa23.24■■□□□ 1.31
ITGA6-201ENST00000264107 ZRSR1Q15695 479 aaKnown RBP23.22■■□□□ 1.31
ITGA6-201ENST00000264107 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
ITGA6-201ENST00000264107 TCERG1O14776 1098 aaKnown RBP23.21■■□□□ 1.31
ITGA6-201ENST00000264107 FBLN2P98095 1184 aa23.19■■□□□ 1.3
ITGA6-201ENST00000264107 SLKQ9H2G2 1235 aaPredicted RBP23.18■■□□□ 1.3
ITGA6-201ENST00000264107 KIAA2012Q0VF49 1180 aa23.17■■□□□ 1.3
ITGA6-201ENST00000264107 GOLGA6L6A8MZA4 724 aa23.17■■□□□ 1.3
ITGA6-201ENST00000264107 CASC1Q6TDU7 716 aa23.12■■□□□ 1.29
ITGA6-201ENST00000264107 NRDCO43847 1150 aa23.11■■□□□ 1.29
ITGA6-201ENST00000264107 GBP4Q96PP9 640 aa23.11■■□□□ 1.29
ITGA6-201ENST00000264107 PTMSP20962 102 aa23.1■■□□□ 1.29
ITGA6-201ENST00000264107 DRC7Q8IY82 874 aa23.05■■□□□ 1.28
ITGA6-201ENST00000264107 FTSJ3Q8IY81 847 aaKnown RBP23.05■■□□□ 1.28
ITGA6-201ENST00000264107 CHIC2Q9UKJ5 165 aa23.04■■□□□ 1.28
ITGA6-201ENST00000264107 ZNF777Q9ULD5 760 aaPredicted RBP23.04■■□□□ 1.28
ITGA6-201ENST00000264107 ARID3CA6NKF2 412 aa23.04■■□□□ 1.28
ITGA6-201ENST00000264107 KDM2AQ9Y2K7 1162 aa23.02■■□□□ 1.28
ITGA6-201ENST00000264107 IL27Q8NEV9 243 aa23.01■■□□□ 1.27
ITGA6-201ENST00000264107 FRAT1Q92837 279 aaPredicted RBP22.97■■□□□ 1.27
ITGA6-201ENST00000264107 FAM13BQ9NYF5 915 aa22.97■■□□□ 1.27
ITGA6-201ENST00000264107 ZNF771Q7L3S4 317 aaPredicted RBP22.96■■□□□ 1.27
ITGA6-201ENST00000264107 SIN3AQ96ST3 1273 aa22.95■■□□□ 1.26
ITGA6-201ENST00000264107 CEP162Q5TB80 1403 aa22.93■■□□□ 1.26
ITGA6-201ENST00000264107 CLIP1P30622 1438 aa22.92■■□□□ 1.26
ITGA6-201ENST00000264107 GOLGA6L4A6NEF3 574 aa22.89■■□□□ 1.25
ITGA6-201ENST00000264107 SLC4A3P48751 1232 aa22.87■■□□□ 1.25
ITGA6-201ENST00000264107 RCAN3Q9UKA8 241 aa22.84■■□□□ 1.25
ITGA6-201ENST00000264107 BRPF3Q9ULD4 1205 aa22.84■■□□□ 1.25
ITGA6-201ENST00000264107 PDE4AP27815 886 aa22.84■■□□□ 1.25
ITGA6-201ENST00000264107 CALD1Q05682 793 aaKnown RBP22.82■■□□□ 1.24
ITGA6-201ENST00000264107 UBE2Q2Q8WVN8 375 aa22.82■■□□□ 1.24
ITGA6-201ENST00000264107 FAM43AQ8N2R8 423 aa22.81■■□□□ 1.24
ITGA6-201ENST00000264107 SYAP1Q96A49 352 aaPredicted RBP22.81■■□□□ 1.24
ITGA6-201ENST00000264107 DDX11L8A8MPP1 907 aa22.8■■□□□ 1.24
ITGA6-201ENST00000264107 NEUROD2Q15784 382 aa22.79■■□□□ 1.24
ITGA6-201ENST00000264107 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.78■■□□□ 1.24
ITGA6-201ENST00000264107 MS4A1P11836 297 aa22.78■■□□□ 1.24
ITGA6-201ENST00000264107 APPP05067 770 aa22.77■■□□□ 1.24
ITGA6-201ENST00000264107 NUDCQ9Y266 331 aa22.77■■□□□ 1.24
ITGA6-201ENST00000264107 KNSTRNQ9Y448 316 aa22.76■■□□□ 1.23
ITGA6-201ENST00000264107 MAP7D2Q96T17 732 aa22.76■■□□□ 1.23
ITGA6-201ENST00000264107 RRP7BPQ9NSQ0 103 aa22.75■■□□□ 1.23
ITGA6-201ENST00000264107 GOLGA6L1Q8N7Z2 621 aa22.75■■□□□ 1.23
ITGA6-201ENST00000264107 KCNH8Q96L42 1107 aa22.75■■□□□ 1.23
ITGA6-201ENST00000264107 CHGAP10645 457 aaKnown RBP22.72■■□□□ 1.23
ITGA6-201ENST00000264107 SETQ01105 290 aaPredicted RBP22.72■■□□□ 1.23
ITGA6-201ENST00000264107 CHMP4BQ9H444 224 aaKnown RBP22.71■■□□□ 1.23
ITGA6-201ENST00000264107 MFAP1P55081 439 aaKnown RBP22.7■■□□□ 1.22
ITGA6-201ENST00000264107 TPM2P07951 284 aa22.69■■□□□ 1.22
ITGA6-201ENST00000264107 NFKBIBQ15653 356 aa22.69■■□□□ 1.22
ITGA6-201ENST00000264107 MTERF4Q7Z6M4 381 aaKnown RBP22.69■■□□□ 1.22
ITGA6-201ENST00000264107 CFAP53Q96M91 514 aa22.69■■□□□ 1.22
ITGA6-201ENST00000264107 CARD11Q9BXL7 1154 aa22.68■■□□□ 1.22
ITGA6-201ENST00000264107 CSPP1Q1MSJ5 1256 aa22.68■■□□□ 1.22
ITGA6-201ENST00000264107 EEA1Q15075 1411 aa22.67■■□□□ 1.22
ITGA6-201ENST00000264107 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
ITGA6-201ENST00000264107 RRP9O43818 475 aaKnown RBP22.66■■□□□ 1.22
ITGA6-201ENST00000264107 MCCP23508 829 aa22.66■■□□□ 1.22
ITGA6-201ENST00000264107 CC2D1BQ5T0F9 858 aaKnown RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms