RNA–Protein interactions for RNA: ENST00000237380.11

MED28-201, Transcript of mediator complex subunit 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MED28, Length 10,868 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-201ENST00000237380 CSRNP3Q8WYN3 585 aa9.78□□□□□ -0.84
MED28-201ENST00000237380 PLEKHD1A6NEE1 506 aa9.78□□□□□ -0.84
MED28-201ENST00000237380 NACADO15069 1562 aa9.78□□□□□ -0.84
MED28-201ENST00000237380 GOLGA2Q08379 1002 aa9.78□□□□□ -0.84
MED28-201ENST00000237380 MTUS2Q5JR59 1369 aa9.78□□□□□ -0.84
MED28-201ENST00000237380 GLIPR1L2Q4G1C9 344 aa9.77□□□□□ -0.84
MED28-201ENST00000237380 CFAP44Q96MT7 982 aa9.77□□□□□ -0.85
MED28-201ENST00000237380 L1TD1Q5T7N2 865 aaKnown RBP9.76□□□□□ -0.85
MED28-201ENST00000237380 KANK1Q14678 1352 aa9.76□□□□□ -0.85
MED28-201ENST00000237380 TMC1Q8TDI8 760 aa9.76□□□□□ -0.85
MED28-201ENST00000237380 FOXD1Q16676 465 aa9.75□□□□□ -0.85
MED28-201ENST00000237380 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.75□□□□□ -0.854e-7■□□□□ 9.7
MED28-201ENST00000237380 GOLGA6L22H0YM25 854 aa9.74□□□□□ -0.85
MED28-201ENST00000237380 EEA1Q15075 1411 aa9.74□□□□□ -0.85
MED28-201ENST00000237380 P3H3Q8IVL6 736 aa9.74□□□□□ -0.85
MED28-201ENST00000237380 GOLGA6L6A8MZA4 724 aa9.74□□□□□ -0.85
MED28-201ENST00000237380 MS4A1P11836 297 aa9.73□□□□□ -0.85
MED28-201ENST00000237380 DCAF8L1A6NGE4 600 aa9.72□□□□□ -0.85
MED28-201ENST00000237380 BECN1Q14457 450 aa9.71□□□□□ -0.85
MED28-201ENST00000237380 NUDCQ9Y266 331 aa9.71□□□□□ -0.85
MED28-201ENST00000237380 CLIP1P30622 1438 aa9.71□□□□□ -0.85
MED28-201ENST00000237380 NRDCO43847 1150 aa9.7□□□□□ -0.86
MED28-201ENST00000237380 ZBTB7CA1YPR0 619 aa9.7□□□□□ -0.86
MED28-201ENST00000237380 TRHP20396 242 aaPredicted RBP9.7□□□□□ -0.86
MED28-201ENST00000237380 ARID3CA6NKF2 412 aa9.69□□□□□ -0.86
MED28-201ENST00000237380 AEBP2Q6ZN18 517 aaPredicted RBP9.69□□□□□ -0.86
MED28-201ENST00000237380 ARXQ96QS3 562 aa9.67□□□□□ -0.86
MED28-201ENST00000237380 TRIM44Q96DX7 344 aaPredicted RBP9.67□□□□□ -0.86
MED28-201ENST00000237380 LOC105371045A0A1W2PR82 267 aa9.66□□□□□ -0.86
MED28-201ENST00000237380 DDRGK1Q96HY6 314 aa9.65□□□□□ -0.86
MED28-201ENST00000237380 HDAC5Q9UQL6 1122 aa9.65□□□□□ -0.86
MED28-201ENST00000237380 MAPK8IP3Q9UPT6 1336 aa9.65□□□□□ -0.87
MED28-201ENST00000237380 POGKQ9P215 609 aa9.64□□□□□ -0.87
MED28-201ENST00000237380 KNSTRNQ9Y448 316 aa9.63□□□□□ -0.87
MED28-201ENST00000237380 BAZ1BQ9UIG0 1483 aaKnown RBP9.62□□□□□ -0.87
MED28-201ENST00000237380 CHAF1AQ13111 956 aaPredicted RBP9.6□□□□□ -0.87
MED28-201ENST00000237380 KCNH8Q96L42 1107 aa9.6□□□□□ -0.87
MED28-201ENST00000237380 CEP162Q5TB80 1403 aa9.6□□□□□ -0.87
MED28-201ENST00000237380 KIAA2012Q0VF49 1180 aa9.6□□□□□ -0.87
MED28-201ENST00000237380 FTSJ3Q8IY81 847 aaKnown RBP9.6□□□□□ -0.87
MED28-201ENST00000237380 CCDC34Q96HJ3 373 aa9.6□□□□□ -0.87
MED28-201ENST00000237380 KRI1Q8N9T8 703 aaKnown RBP9.59□□□□□ -0.87
MED28-201ENST00000237380 HMGB2P26583 209 aaKnown RBP9.59□□□□□ -0.87
MED28-201ENST00000237380 CALD1Q05682 793 aaKnown RBP9.59□□□□□ -0.87
MED28-201ENST00000237380 LMOD2Q6P5Q4 547 aa9.58□□□□□ -0.88
MED28-201ENST00000237380 CARMIL2Q6F5E8 1435 aa9.58□□□□□ -0.88
MED28-201ENST00000237380 TNNT2P45379 298 aaPredicted RBP9.58□□□□□ -0.88
MED28-201ENST00000237380 KIF27Q86VH2 1401 aa9.58□□□□□ -0.88
MED28-201ENST00000237380 FGD1P98174 961 aa9.57□□□□□ -0.88
MED28-201ENST00000237380 USP35Q9P2H5 1018 aa9.57□□□□□ -0.88
MED28-201ENST00000237380 OS9Q13438 667 aaPredicted RBP9.57□□□□□ -0.88
MED28-201ENST00000237380 FHAD1B1AJZ9 1412 aa9.57□□□□□ -0.88
MED28-201ENST00000237380 MCCP23508 829 aa9.57□□□□□ -0.88
MED28-201ENST00000237380 CCDC136Q96JN2 1154 aa9.57□□□□□ -0.88
MED28-201ENST00000237380 CFDP1Q9UEE9 299 aaPredicted RBP9.56□□□□□ -0.88
MED28-201ENST00000237380 KDM2AQ9Y2K7 1162 aa9.55□□□□□ -0.88
MED28-201ENST00000237380 G3V3G9 751 aa9.55□□□□□ -0.88
MED28-201ENST00000237380 DCAF8Q5TAQ9 597 aa9.55□□□□□ -0.88
MED28-201ENST00000237380 GTF3C3Q9Y5Q9 886 aa9.55□□□□□ -0.88
MED28-201ENST00000237380 WASHC2AQ641Q2 1341 aa9.54□□□□□ -0.88
MED28-201ENST00000237380 RTF1Q92541 710 aaKnown RBP9.54□□□□□ -0.88
MED28-201ENST00000237380 EID1Q9Y6B2 187 aa9.54□□□□□ -0.88
MED28-201ENST00000237380 HNRNPUQ00839 825 aaKnown RBP eCLIP9.54□□□□□ -0.88
MED28-201ENST00000237380 KCNJ4P48050 445 aa9.52□□□□□ -0.88
MED28-201ENST00000237380 CLSTN1O94985 981 aa9.52□□□□□ -0.89
MED28-201ENST00000237380 CHMP4CQ96CF2 233 aa9.52□□□□□ -0.89
MED28-201ENST00000237380 GOLGA3Q08378 1498 aa9.52□□□□□ -0.89
MED28-201ENST00000237380 HTATSF1O43719 755 aaKnown RBP9.52□□□□□ -0.89
MED28-201ENST00000237380 PDS5BQ9NTI5 1447 aa9.51□□□□□ -0.89
MED28-201ENST00000237380 MYO15BQ96JP2 1530 aa9.51□□□□□ -0.89
MED28-201ENST00000237380 FAM9BQ8IZU0 186 aa9.51□□□□□ -0.89
MED28-201ENST00000237380 TULP1O00294 542 aaPredicted RBP9.5□□□□□ -0.89
MED28-201ENST00000237380 CHIC2Q9UKJ5 165 aa9.5□□□□□ -0.89
MED28-201ENST00000237380 PTMSP20962 102 aa9.5□□□□□ -0.89
MED28-201ENST00000237380 HDGFL2Q7Z4V5 671 aaPredicted RBP9.49□□□□□ -0.89
MED28-201ENST00000237380 EIF3AQ14152 1382 aaKnown RBP9.49□□□□□ -0.89
MED28-201ENST00000237380 PPM1GO15355 546 aaPredicted RBP9.49□□□□□ -0.89
MED28-201ENST00000237380 GPATCH3Q96I76 525 aa9.49□□□□□ -0.89
MED28-201ENST00000237380 MRS2Q9HD23 443 aa9.48□□□□□ -0.89
MED28-201ENST00000237380 GNL2Q13823 731 aaKnown RBP9.48□□□□□ -0.89
MED28-201ENST00000237380 SMARCA2P51531 1590 aa9.47□□□□□ -0.89
MED28-201ENST00000237380 BAZ1AQ9NRL2 1556 aaPredicted RBP9.47□□□□□ -0.89
MED28-201ENST00000237380 GOLGA6L4A6NEF3 574 aa9.47□□□□□ -0.89
MED28-201ENST00000237380 WRNQ14191 1432 aaPredicted RBP eCLIP9.47□□□□□ -0.89
MED28-201ENST00000237380 CCNB3Q8WWL7 1395 aa9.47□□□□□ -0.89
MED28-201ENST00000237380 PTMAP06454 111 aaKnown RBP9.47□□□□□ -0.89
MED28-201ENST00000237380 SRPK2P78362 688 aaKnown RBP9.47□□□□□ -0.89
MED28-201ENST00000237380 SPAG9O60271 1321 aaKnown RBP9.46□□□□□ -0.89
MED28-201ENST00000237380 WWC1Q8IX03 1113 aa9.46□□□□□ -0.89
MED28-201ENST00000237380 TMF1P82094 1093 aa9.46□□□□□ -0.9
MED28-201ENST00000237380 ISY1Q9ULR0 285 aaKnown RBP9.46□□□□□ -0.9
MED28-201ENST00000237380 PLEKHG5O94827 1062 aa9.46□□□□□ -0.9
MED28-201ENST00000237380 CEP164Q9UPV0 1460 aa9.45□□□□□ -0.9
MED28-201ENST00000237380 RSPH4AQ5TD94 716 aa9.44□□□□□ -0.9
MED28-201ENST00000237380 TPM4P67936 248 aa9.44□□□□□ -0.9
MED28-201ENST00000237380 LRRFIP1Q32MZ4 808 aaKnown RBP9.44□□□□□ -0.9
MED28-201ENST00000237380 IPO8O15397 1037 aaKnown RBP9.44□□□□□ -0.9
MED28-201ENST00000237380 CCDC9Q9Y3X0 531 aaKnown RBP9.44□□□□□ -0.9
MED28-201ENST00000237380 CSB-PGBD3P0DP91 1061 aa9.43□□□□□ -0.9
MED28-201ENST00000237380 KIAA1211Q6ZU35 1233 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms