RNA–Protein interactions for RNA: ENST00000237380.11

MED28-201, Transcript of mediator complex subunit 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MED28, Length 10,868 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-201ENST00000237380 DCAF8L2P0C7V8 631 aa12.5□□□□□ -0.41
MED28-201ENST00000237380 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
MED28-201ENST00000237380 PELP1Q8IZL8 1130 aaKnown RBP11.94□□□□□ -0.5
MED28-201ENST00000237380 NISCHQ9Y2I1 1504 aa11.85□□□□□ -0.51
MED28-201ENST00000237380 APLP2Q06481 763 aa11.75□□□□□ -0.53
MED28-201ENST00000237380 CCER1Q8TC90 406 aaPredicted RBP11.42□□□□□ -0.58
MED28-201ENST00000237380 SUPT5HO00267 1087 aaKnown RBP11.41□□□□□ -0.58
MED28-201ENST00000237380 ERICH6Q7L0X2 663 aa11.13□□□□□ -0.63
MED28-201ENST00000237380 SHROOM4Q9ULL8 1493 aa11.08□□□□□ -0.64
MED28-201ENST00000237380 ATP1B4Q9UN42 357 aaPredicted RBP11.07□□□□□ -0.64
MED28-201ENST00000237380 ZEB1P37275 1124 aaPredicted RBP11.03□□□□□ -0.64
MED28-201ENST00000237380 MYT1LQ9UL68 1186 aa11.02□□□□□ -0.64
MED28-201ENST00000237380 CENPBP07199 599 aaPredicted RBP10.96□□□□□ -0.66
MED28-201ENST00000237380 YTHDC1Q96MU7 727 aaKnown RBP10.96□□□□□ -0.66
MED28-201ENST00000237380 NEFLP07196 543 aa10.95□□□□□ -0.66
MED28-201ENST00000237380 EHMT2Q96KQ7 1210 aa10.93□□□□□ -0.66
MED28-201ENST00000237380 UBTFP17480 764 aaKnown RBP10.87□□□□□ -0.67
MED28-201ENST00000237380 TRIM41Q8WV44 630 aa10.87□□□□□ -0.67
MED28-201ENST00000237380 DAXXQ9UER7 740 aaPredicted RBP10.86□□□□□ -0.67
MED28-201ENST00000237380 MYT1Q01538 1121 aa10.86□□□□□ -0.67
MED28-201ENST00000237380 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.81□□□□□ -0.68
MED28-201ENST00000237380 HNRNPUL2Q1KMD3 747 aaKnown RBP10.81□□□□□ -0.68
MED28-201ENST00000237380 RANGAP1P46060 587 aaPredicted RBP10.74□□□□□ -0.69
MED28-201ENST00000237380 NEFMP07197 916 aa10.67□□□□□ -0.7
MED28-201ENST00000237380 PCGF6Q9BYE7 350 aa10.66□□□□□ -0.7
MED28-201ENST00000237380 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
MED28-201ENST00000237380 ZBTB47Q9UFB7 747 aaPredicted RBP10.61□□□□□ -0.71
MED28-201ENST00000237380 TTBK1Q5TCY1 1321 aaPredicted RBP10.6□□□□□ -0.71
MED28-201ENST00000237380 ESF1Q9H501 851 aaKnown RBP10.53□□□□□ -0.72
MED28-201ENST00000237380 ZNF316A6NFI3 1004 aaPredicted RBP10.49□□□□□ -0.73
MED28-201ENST00000237380 CHIC1Q5VXU3 224 aa10.48□□□□□ -0.73
MED28-201ENST00000237380 POLR3GLQ9BT43 218 aa10.47□□□□□ -0.73
MED28-201ENST00000237380 CLSPNQ9HAW4 1339 aa10.46□□□□□ -0.73
MED28-201ENST00000237380 BCANQ96GW7 911 aa10.44□□□□□ -0.74
MED28-201ENST00000237380 NPM1P06748 294 aaKnown RBP eCLIP10.41□□□□□ -0.74
MED28-201ENST00000237380 CDK11AQ9UQ88 783 aaPredicted RBP10.38□□□□□ -0.75
MED28-201ENST00000237380 SLC24A1O60721 1099 aa10.33□□□□□ -0.76
MED28-201ENST00000237380 ITGAEP38570 1179 aa10.32□□□□□ -0.76
MED28-201ENST00000237380 RTL5Q5HYW3 569 aaPredicted RBP10.32□□□□□ -0.76
MED28-201ENST00000237380 TRIM26Q12899 539 aaPredicted RBP10.31□□□□□ -0.76
MED28-201ENST00000237380 TRIM52Q96A61 297 aa10.3□□□□□ -0.76
MED28-201ENST00000237380 FBLN2P98095 1184 aa10.28□□□□□ -0.76
MED28-201ENST00000237380 STAG3Q9UJ98 1225 aa10.28□□□□□ -0.76
MED28-201ENST00000237380 HRCP23327 699 aa10.28□□□□□ -0.76
MED28-201ENST00000237380 ACIN1Q9UKV3 1341 aaKnown RBP10.27□□□□□ -0.77
MED28-201ENST00000237380 FAM50AQ14320 339 aaKnown RBP10.25□□□□□ -0.77
MED28-201ENST00000237380 CANXP27824 592 aaKnown RBP10.24□□□□□ -0.77
MED28-201ENST00000237380 NPM2Q86SE8 214 aaKnown RBP10.22□□□□□ -0.77
MED28-201ENST00000237380 ABCC9O60706 1549 aa10.21□□□□□ -0.77
MED28-201ENST00000237380 CDK11BP21127 795 aaKnown RBP10.2□□□□□ -0.78
MED28-201ENST00000237380 ANP32BQ92688 251 aaKnown RBP10.16□□□□□ -0.78
MED28-201ENST00000237380 ANP32CO43423 234 aa10.14□□□□□ -0.79
MED28-201ENST00000237380 CCDC180Q9P1Z9 1646 aa10.13□□□□□ -0.79
MED28-201ENST00000237380 EIF5BO60841 1220 aaKnown RBP10.13□□□□□ -0.79
MED28-201ENST00000237380 UPF2Q9HAU5 1272 aaKnown RBP10.09□□□□□ -0.79
MED28-201ENST00000237380 PABPN1Q86U42 306 aaKnown RBP eCLIP10.04□□□□□ -0.8
MED28-201ENST00000237380 CNGB1Q14028 1251 aaPredicted RBP10.04□□□□□ -0.8
MED28-201ENST00000237380 ZNF326Q5BKZ1 582 aaKnown RBP10.02□□□□□ -0.8
MED28-201ENST00000237380 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.02□□□□□ -0.81
MED28-201ENST00000237380 HSP90AA1P07900 732 aaKnown RBP10.01□□□□□ -0.81
MED28-201ENST00000237380 HAP1P54257 671 aaPredicted RBP9.99□□□□□ -0.81
MED28-201ENST00000237380 DCAF1Q9Y4B6 1507 aa9.99□□□□□ -0.81
MED28-201ENST00000237380 MYH16Q9H6N6 1097 aa9.99□□□□□ -0.81
MED28-201ENST00000237380 RB1CC1Q8TDY2 1594 aa9.98□□□□□ -0.81
MED28-201ENST00000237380 SCAF1Q9H7N4 1312 aaKnown RBP9.98□□□□□ -0.81
MED28-201ENST00000237380 EIF4G2P78344 907 aaKnown RBP eCLIP9.98□□□□□ -0.817e-11■■□□□ 11.5
MED28-201ENST00000237380 CHGAP10645 457 aaKnown RBP9.97□□□□□ -0.81
MED28-201ENST00000237380 ZNF777Q9ULD5 760 aaPredicted RBP9.97□□□□□ -0.81
MED28-201ENST00000237380 NEUROD1Q13562 356 aa9.96□□□□□ -0.81
MED28-201ENST00000237380 TSPY4P0CV99 314 aa9.96□□□□□ -0.81
MED28-201ENST00000237380 TSPY10P0CW01 314 aa9.96□□□□□ -0.81
MED28-201ENST00000237380 HDGFP51858 240 aaKnown RBP9.95□□□□□ -0.82
MED28-201ENST00000237380 C14orf37Q86TY3 774 aa9.95□□□□□ -0.82
MED28-201ENST00000237380 ANP32AP39687 249 aaKnown RBP9.94□□□□□ -0.82
MED28-201ENST00000237380 ZCCHC6Q5VYS8 1495 aaKnown RBP9.94□□□□□ -0.82
MED28-201ENST00000237380 CHMP7Q8WUX9 453 aaPredicted RBP9.93□□□□□ -0.82
MED28-201ENST00000237380 PPP1R15AO75807 674 aaPredicted RBP9.93□□□□□ -0.82
MED28-201ENST00000237380 PPARGC1BQ86YN6 1023 aaKnown RBP9.93□□□□□ -0.82
MED28-201ENST00000237380 CDCA8Q53HL2 280 aa9.9□□□□□ -0.82
MED28-201ENST00000237380 PLPPR3Q6T4P5 718 aa9.88□□□□□ -0.83
MED28-201ENST00000237380 TONSLQ96HA7 1378 aa9.88□□□□□ -0.83
MED28-201ENST00000237380 A0A0G2JS52 829 aa9.88□□□□□ -0.83
MED28-201ENST00000237380 DIEXFQ68CQ4 756 aaKnown RBP9.88□□□□□ -0.83
MED28-201ENST00000237380 WDR43Q15061 677 aaKnown RBP eCLIP9.88□□□□□ -0.83
MED28-201ENST00000237380 NPHP1O15259 732 aa9.87□□□□□ -0.83
MED28-201ENST00000237380 CHMP4BQ9H444 224 aaKnown RBP9.87□□□□□ -0.83
MED28-201ENST00000237380 ARID4BQ4LE39 1312 aaPredicted RBP9.87□□□□□ -0.83
MED28-201ENST00000237380 RSF1Q96T23 1441 aaPredicted RBP9.86□□□□□ -0.83
MED28-201ENST00000237380 PNNQ9H307 717 aaKnown RBP9.86□□□□□ -0.83
MED28-201ENST00000237380 ERCC6Q03468 1493 aa9.85□□□□□ -0.83
MED28-201ENST00000237380 CASC1Q6TDU7 716 aa9.85□□□□□ -0.83
MED28-201ENST00000237380 ANP32EQ9BTT0 268 aa9.84□□□□□ -0.83
MED28-201ENST00000237380 TMX4Q9H1E5 349 aaPredicted RBP9.84□□□□□ -0.83
MED28-201ENST00000237380 SCRIBQ14160 1630 aa9.84□□□□□ -0.83
MED28-201ENST00000237380 ZRSR1Q15695 479 aaKnown RBP9.83□□□□□ -0.84
MED28-201ENST00000237380 NCLP19338 710 aaKnown RBP9.82□□□□□ -0.84
MED28-201ENST00000237380 CFAP53Q96M91 514 aa9.81□□□□□ -0.84
MED28-201ENST00000237380 BCL11AQ9H165 835 aa9.81□□□□□ -0.84
MED28-201ENST00000237380 ANO8Q9HCE9 1232 aaPredicted RBP9.81□□□□□ -0.84
MED28-201ENST00000237380 CHMP4AQ9BY43 222 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms