RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 DNTTIP2Q5QJE6 756 aaKnown RBP14.9□□□□□ -0.02
MSH6-201ENST00000234420 ANO8Q9HCE9 1232 aaPredicted RBP14.87□□□□□ -0.03
MSH6-201ENST00000234420 ISY1Q9ULR0 285 aaKnown RBP14.86□□□□□ -0.03
MSH6-201ENST00000234420 ERICH6BQ5W0A0 696 aa14.85□□□□□ -0.03
MSH6-201ENST00000234420 PPP1R15AO75807 674 aaPredicted RBP14.85□□□□□ -0.03
MSH6-201ENST00000234420 AEBP2Q6ZN18 517 aaPredicted RBP14.83□□□□□ -0.03
MSH6-201ENST00000234420 CCDC136Q96JN2 1154 aa14.82□□□□□ -0.04
MSH6-201ENST00000234420 KDM2AQ9Y2K7 1162 aa14.82□□□□□ -0.04
MSH6-201ENST00000234420 PPM1GO15355 546 aaPredicted RBP14.82□□□□□ -0.04
MSH6-201ENST00000234420 PTMAP06454 111 aaKnown RBP14.81□□□□□ -0.04
MSH6-201ENST00000234420 SENP3-EIF4A1A0A087X0R7 540 aa14.78□□□□□ -0.04
MSH6-201ENST00000234420 KCNH8Q96L42 1107 aa14.77□□□□□ -0.05
MSH6-201ENST00000234420 KRI1Q8N9T8 703 aaKnown RBP14.77□□□□□ -0.05
MSH6-201ENST00000234420 HNRNPUQ00839 825 aaKnown RBP eCLIP14.76□□□□□ -0.051e-6■□□□□ 11
MSH6-201ENST00000234420 PHF23Q9BUL5 403 aaPredicted RBP14.76□□□□□ -0.05
MSH6-201ENST00000234420 IRX6P78412 446 aaPredicted RBP14.75□□□□□ -0.05
MSH6-201ENST00000234420 NCLP19338 710 aaKnown RBP14.74□□□□□ -0.05
MSH6-201ENST00000234420 CCDC9Q9Y3X0 531 aaKnown RBP14.72□□□□□ -0.05
MSH6-201ENST00000234420 SOX12O15370 315 aa14.72□□□□□ -0.05
MSH6-201ENST00000234420 GOLGA2Q08379 1002 aa14.7□□□□□ -0.06
MSH6-201ENST00000234420 LAS1LQ9Y4W2 734 aaKnown RBP14.69□□□□□ -0.06
MSH6-201ENST00000234420 MLECQ14165 292 aa14.69□□□□□ -0.06
MSH6-201ENST00000234420 FAM9BQ8IZU0 186 aa14.69□□□□□ -0.06
MSH6-201ENST00000234420 NAP1L2Q9ULW6 460 aaPredicted RBP14.69□□□□□ -0.06
MSH6-201ENST00000234420 FBXO3Q9UK99 471 aa14.68□□□□□ -0.06
MSH6-201ENST00000234420 TMC1Q8TDI8 760 aa14.68□□□□□ -0.06
MSH6-201ENST00000234420 ARID3AQ99856 593 aa14.68□□□□□ -0.06
MSH6-201ENST00000234420 CHIC2Q9UKJ5 165 aa14.67□□□□□ -0.06
MSH6-201ENST00000234420 PDE4CQ08493 712 aa14.65□□□□□ -0.06
MSH6-201ENST00000234420 DDRGK1Q96HY6 314 aa14.65□□□□□ -0.06
MSH6-201ENST00000234420 BECN1Q14457 450 aa14.64□□□□□ -0.07
MSH6-201ENST00000234420 GOLGA6L22H0YM25 854 aa14.63□□□□□ -0.07
MSH6-201ENST00000234420 KLHL34Q8N239 644 aa14.63□□□□□ -0.07
MSH6-201ENST00000234420 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.63□□□□□ -0.07
MSH6-201ENST00000234420 TNNT3P45378 269 aaPredicted RBP14.62□□□□□ -0.07
MSH6-201ENST00000234420 DEKP35659 375 aaKnown RBP14.61□□□□□ -0.07
MSH6-201ENST00000234420 PLCB2Q00722 1185 aa14.61□□□□□ -0.07
MSH6-201ENST00000234420 ZNF330Q9Y3S2 320 aaPredicted RBP14.6□□□□□ -0.07
MSH6-201ENST00000234420 MYH16Q9H6N6 1097 aa14.6□□□□□ -0.07
MSH6-201ENST00000234420 WDR43Q15061 677 aaKnown RBP eCLIP14.57□□□□□ -0.082e-9■□□□□ 9.3
MSH6-201ENST00000234420 DDX10Q13206 875 aaKnown RBP14.54□□□□□ -0.08
MSH6-201ENST00000234420 ZRSR1Q15695 479 aaKnown RBP14.54□□□□□ -0.08
MSH6-201ENST00000234420 NOP58Q9Y2X3 529 aaKnown RBP14.5□□□□□ -0.09
MSH6-201ENST00000234420 CHMP7Q8WUX9 453 aaPredicted RBP14.5□□□□□ -0.09
MSH6-201ENST00000234420 G3V3G9 751 aa14.49□□□□□ -0.09
MSH6-201ENST00000234420 MSH5O43196 834 aa14.49□□□□□ -0.09
MSH6-201ENST00000234420 DCAF8Q5TAQ9 597 aa14.49□□□□□ -0.09
MSH6-201ENST00000234420 MSNP26038 577 aaKnown RBP14.49□□□□□ -0.09
MSH6-201ENST00000234420 CHAF1AQ13111 956 aaPredicted RBP14.49□□□□□ -0.09
MSH6-201ENST00000234420 RGL3Q3MIN7 710 aa14.47□□□□□ -0.09
MSH6-201ENST00000234420 OS9Q13438 667 aaPredicted RBP14.47□□□□□ -0.09
MSH6-201ENST00000234420 WWC1Q8IX03 1113 aa14.46□□□□□ -0.1
MSH6-201ENST00000234420 PAK3O75914 559 aaPredicted RBP14.45□□□□□ -0.1
MSH6-201ENST00000234420 HIRIP3Q9BW71 556 aaPredicted RBP14.45□□□□□ -0.1
MSH6-201ENST00000234420 VSIG10Q8N0Z9 540 aa14.44□□□□□ -0.1
MSH6-201ENST00000234420 TMX4Q9H1E5 349 aaPredicted RBP14.44□□□□□ -0.1
MSH6-201ENST00000234420 CALRP27797 417 aaKnown RBP14.43□□□□□ -0.1
MSH6-201ENST00000234420 NEUROD2Q15784 382 aa14.43□□□□□ -0.1
MSH6-201ENST00000234420 FGD1P98174 961 aa14.42□□□□□ -0.1
MSH6-201ENST00000234420 MEX3CQ5U5Q3 659 aaKnown RBP14.42□□□□□ -0.1
MSH6-201ENST00000234420 MIER1Q8N108 512 aa14.4□□□□□ -0.1
MSH6-201ENST00000234420 CNKSR2Q8WXI2 1034 aa14.39□□□□□ -0.11
MSH6-201ENST00000234420 GOLGA6L6A8MZA4 724 aa14.38□□□□□ -0.11
MSH6-201ENST00000234420 SAFB2Q14151 953 aaKnown RBP eCLIP14.37□□□□□ -0.11
MSH6-201ENST00000234420 A0A0U1RQG5 324 aaPredicted RBP14.36□□□□□ -0.11
MSH6-201ENST00000234420 CSRNP3Q8WYN3 585 aa14.36□□□□□ -0.11
MSH6-201ENST00000234420 L1TD1Q5T7N2 865 aaKnown RBP14.35□□□□□ -0.11
MSH6-201ENST00000234420 PNNQ9H307 717 aaKnown RBP14.35□□□□□ -0.11
MSH6-201ENST00000234420 MRS2Q9HD23 443 aa14.35□□□□□ -0.11
MSH6-201ENST00000234420 POGKQ9P215 609 aa14.35□□□□□ -0.11
MSH6-201ENST00000234420 KCNJ4P48050 445 aa14.34□□□□□ -0.11
MSH6-201ENST00000234420 DCAF8L1A6NGE4 600 aa14.34□□□□□ -0.11
MSH6-201ENST00000234420 HSP90AA2PQ14568 343 aaPredicted RBP14.34□□□□□ -0.11
MSH6-201ENST00000234420 CSB-PGBD3P0DP91 1061 aa14.33□□□□□ -0.11
MSH6-201ENST00000234420 NRDCO43847 1150 aa14.33□□□□□ -0.12
MSH6-201ENST00000234420 VPS53Q5VIR6 699 aa14.33□□□□□ -0.12
MSH6-201ENST00000234420 DRC7Q8IY82 874 aa14.32□□□□□ -0.12
MSH6-201ENST00000234420 TONSLQ96HA7 1378 aa14.3□□□□□ -0.12
MSH6-201ENST00000234420 PPP1R1BQ9UD71 204 aaPredicted RBP14.3□□□□□ -0.12
MSH6-201ENST00000234420 SUPT16HQ9Y5B9 1047 aaKnown RBP14.3□□□□□ -0.12
MSH6-201ENST00000234420 TSPY4P0CV99 314 aa14.29□□□□□ -0.12
MSH6-201ENST00000234420 TSPY10P0CW01 314 aa14.29□□□□□ -0.12
MSH6-201ENST00000234420 HSP90AB1P08238 724 aaKnown RBP14.29□□□□□ -0.12
MSH6-201ENST00000234420 CHMP3Q9Y3E7 222 aa14.27□□□□□ -0.12
MSH6-201ENST00000234420 FTSJ3Q8IY81 847 aaKnown RBP14.27□□□□□ -0.13
MSH6-201ENST00000234420 RAD21O60216 631 aa14.26□□□□□ -0.13
MSH6-201ENST00000234420 SPRYD3Q8NCJ5 442 aa14.26□□□□□ -0.13
MSH6-201ENST00000234420 CASC1Q6TDU7 716 aa14.25□□□□□ -0.13
MSH6-201ENST00000234420 U2SURPO15042 1029 aaKnown RBP14.25□□□□□ -0.13
MSH6-201ENST00000234420 RGS3P49796 1198 aa14.25□□□□□ -0.13
MSH6-201ENST00000234420 RRP7BPQ9NSQ0 103 aa14.24□□□□□ -0.13
MSH6-201ENST00000234420 STK26Q9P289 416 aa14.24□□□□□ -0.13
MSH6-201ENST00000234420 FBXW7Q969H0 707 aa14.24□□□□□ -0.13
MSH6-201ENST00000234420 SAMD1Q6SPF0 538 aaPredicted RBP14.23□□□□□ -0.13
MSH6-201ENST00000234420 GNL2Q13823 731 aaKnown RBP14.23□□□□□ -0.13
MSH6-201ENST00000234420 ERCC6Q03468 1493 aa14.23□□□□□ -0.13
MSH6-201ENST00000234420 NOC3LQ8WTT2 800 aaKnown RBP14.23□□□□□ -0.13
MSH6-201ENST00000234420 GZF1Q9H116 711 aaPredicted RBP14.23□□□□□ -0.13
MSH6-201ENST00000234420 CWC22Q9HCG8 908 aaKnown RBP14.23□□□□□ -0.13
MSH6-201ENST00000234420 APBB1O00213 710 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms