RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C RFC5P38251 354 aa5.64□□□□□ -1.51
VPS1YKR001C YHL050CP38721 697 aa5.64□□□□□ -1.51
VPS1YKR001C LRP1P38801 184 aaKnown RBP5.64□□□□□ -1.51
VPS1YKR001C VPS8P39702 1274 aa5.64□□□□□ -1.51
VPS1YKR001C JLP2P40206 208 aa5.64□□□□□ -1.51
VPS1YKR001C GCN20P43535 752 aaKnown RBP5.64□□□□□ -1.51
VPS1YKR001C RBL2P48606 106 aaKnown RBP5.64□□□□□ -1.51
VPS1YKR001C RSC4Q02206 625 aa5.64□□□□□ -1.51
VPS1YKR001C RBS1Q05672 457 aaKnown RBP5.64□□□□□ -1.51
VPS1YKR001C VHS3Q08438 674 aa5.64□□□□□ -1.51
VPS1YKR001C VIK1Q12045 647 aa5.64□□□□□ -1.51
VPS1YKR001C RAD61Q99359 647 aa5.64□□□□□ -1.51
VPS1YKR001C SPS22P25380 463 aa5.63□□□□□ -1.51
VPS1YKR001C OXP1P28273 1286 aa5.63□□□□□ -1.51
VPS1YKR001C SDS22P36047 338 aa5.63□□□□□ -1.51
VPS1YKR001C YMR262WP38430 313 aa5.63□□□□□ -1.51
VPS1YKR001C CRP1P38845 465 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C SAW1P39735 261 aa5.63□□□□□ -1.51
VPS1YKR001C YMR147WP40218 223 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C EPS1P40557 701 aa5.63□□□□□ -1.51
VPS1YKR001C GPD2P41911 440 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C YGL039WP53183 348 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C DSE4P53753 1117 aa5.63□□□□□ -1.51
VPS1YKR001C ERV25P54837 211 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C TRS130Q03660 1102 aa5.63□□□□□ -1.51
VPS1YKR001C RTN1Q04947 295 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C YCS4Q06156 1176 aa5.63□□□□□ -1.51
VPS1YKR001C SPH1Q06160 661 aa5.63□□□□□ -1.51
VPS1YKR001C DSE3Q08729 430 aa5.63□□□□□ -1.51
VPS1YKR001C SMF3Q12078 473 aaPredicted RBP5.63□□□□□ -1.51
VPS1YKR001C MED1Q12321 566 aa5.63□□□□□ -1.51
VPS1YKR001C ERP3Q12403 225 aa5.63□□□□□ -1.51
VPS1YKR001C TRM11Q12463 433 aa5.63□□□□□ -1.51
VPS1YKR001C TMA7Q3E764 64 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C YPR089WO13585 888 aa5.63□□□□□ -1.51
VPS1YKR001C TRP3P00937 484 aa5.63□□□□□ -1.51
VPS1YKR001C PBS2P08018 668 aa5.63□□□□□ -1.51
VPS1YKR001C LAT1P12695 482 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C IDI1P15496 288 aa5.63□□□□□ -1.51
VPS1YKR001C HCA4P20448 770 aaKnown RBP5.63□□□□□ -1.51
VPS1YKR001C LYP1P32487 611 aa5.63□□□□□ -1.51
VPS1YKR001C SHP1P34223 423 aa5.63□□□□□ -1.51
VPS1YKR001C MRPL17P36528 281 aa5.63□□□□□ -1.51
VPS1YKR001C APM3P38153 483 aa5.63□□□□□ -1.51
VPS1YKR001C SWC5P38326 303 aa5.63□□□□□ -1.51
VPS1YKR001C PAN5P38787 379 aa5.63□□□□□ -1.51
VPS1YKR001C RCY1P39531 840 aa5.63□□□□□ -1.51
VPS1YKR001C BRE2P43132 505 aa5.63□□□□□ -1.51
VPS1YKR001C POL32P47110 350 aa5.63□□□□□ -1.51
VPS1YKR001C KAP114P53067 1004 aa5.63□□□□□ -1.51
VPS1YKR001C ECM7Q06200 448 aa5.63□□□□□ -1.51
VPS1YKR001C ENA1P13587 1091 aa5.62□□□□□ -1.51
VPS1YKR001C PRP16P15938 1071 aaPredicted RBP5.62□□□□□ -1.51
VPS1YKR001C ADE2P21264 571 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C DBP7P36120 742 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C CDC27P38042 758 aa5.62□□□□□ -1.51
VPS1YKR001C STP2P38704 541 aa5.62□□□□□ -1.51
VPS1YKR001C RPN10P38886 268 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C MLC1P53141 149 aa5.62□□□□□ -1.51
VPS1YKR001C MAP1Q01662 387 aaKnown RBP RIP-Chip data5.62□□□□□ -1.51not detected
VPS1YKR001C ENA2Q01896 1091 aa5.62□□□□□ -1.51
VPS1YKR001C RMI1Q02685 241 aa5.62□□□□□ -1.51
VPS1YKR001C USA1Q03714 838 aa5.62□□□□□ -1.51
VPS1YKR001C HMO1Q03973 246 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C GYL1Q04322 720 aa5.62□□□□□ -1.51
VPS1YKR001C DUS3Q06053 668 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C AVL9Q12500 764 aa5.62□□□□□ -1.51
VPS1YKR001C ENA5Q12691 1091 aa5.62□□□□□ -1.51
VPS1YKR001C YDR461C-AQ2V2P7 80 aa5.62□□□□□ -1.51
VPS1YKR001C TOR2P32600 2474 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C SNA3P14359 133 aa5.62□□□□□ -1.51
VPS1YKR001C MET8P15807 274 aa5.62□□□□□ -1.51
VPS1YKR001C PEX1P24004 1043 aa5.62□□□□□ -1.51
VPS1YKR001C MCR1P36060 302 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C POA1P38218 177 aa5.62□□□□□ -1.51
VPS1YKR001C YBR138CP38277 524 aa5.62□□□□□ -1.51
VPS1YKR001C UBP9P39967 754 aa5.62□□□□□ -1.51
VPS1YKR001C TED1P40533 473 aa5.62□□□□□ -1.51
VPS1YKR001C BBC1P47068 1157 aa5.62□□□□□ -1.51
VPS1YKR001C MAD3P47074 515 aa5.62□□□□□ -1.51
VPS1YKR001C IMD4P50094 524 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C MRPL50P53724 139 aa5.62□□□□□ -1.51
VPS1YKR001C GFD1Q04839 188 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C YMR321CQ04898 105 aa5.62□□□□□ -1.51
VPS1YKR001C MCM21Q06675 368 aa5.62□□□□□ -1.51
VPS1YKR001C REH1Q06709 432 aa5.62□□□□□ -1.51
VPS1YKR001C DTD1Q07648 150 aaKnown RBP5.62□□□□□ -1.51
VPS1YKR001C GYP1Q08484 637 aa5.62□□□□□ -1.51
VPS1YKR001C YOR296WQ08748 1289 aa5.62□□□□□ -1.51
VPS1YKR001C ATG29Q12092 213 aa5.62□□□□□ -1.51
VPS1YKR001C PAB1P04147 577 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
VPS1YKR001C PHR1P05066 565 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
VPS1YKR001C STI1P15705 589 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
VPS1YKR001C PHO3P24031 467 aa5.61□□□□□ -1.51
VPS1YKR001C ATO2P32907 282 aa5.61□□□□□ -1.51
VPS1YKR001C VPS17P32913 551 aa5.61□□□□□ -1.51
VPS1YKR001C TYE7P33122 291 aaPredicted RBP5.61□□□□□ -1.51
VPS1YKR001C SOH1P38633 127 aa5.61□□□□□ -1.51
VPS1YKR001C FCY21P40039 528 aa5.61□□□□□ -1.51
VPS1YKR001C THO1P40040 218 aaKnown RBP5.61□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 11.4 ms