RNA–Protein interactions for RNA: YOR216C

RUD3, Transcript of Golgi matrix protein, yeast

Gene RUD3, Length 1,455 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUD3	YOR216C	YIP4	P53093	235 aa		3.55	□□□□□ -1.84
RUD3	YOR216C	GPD1	Q00055	391 aa	Known RBP	3.55	□□□□□ -1.84
RUD3	YOR216C	RCR2	Q03446	210 aa	Known RBP	3.55	□□□□□ -1.84
RUD3	YOR216C	VBA4	Q04602	768 aa	Known RBP	3.55	□□□□□ -1.84
RUD3	YOR216C	ATG33	Q06485	197 aa		3.55	□□□□□ -1.84
RUD3	YOR216C	YOR111W	Q99210	232 aa		3.55	□□□□□ -1.84
RUD3	YOR216C	NOP1	P15646	327 aa	Known RBP	3.54	□□□□□ -1.84
RUD3	YOR216C	IMG2	P25642	146 aa	Predicted RBP	3.54	□□□□□ -1.84
RUD3	YOR216C	APD1	P38281	316 aa		3.54	□□□□□ -1.84
RUD3	YOR216C	BEM4	P39011	633 aa		3.54	□□□□□ -1.84
RUD3	YOR216C	JHD1	P40034	492 aa		3.54	□□□□□ -1.84
RUD3	YOR216C	YNL018C	P53976	612 aa		3.54	□□□□□ -1.84
RUD3	YOR216C	TMN3	P40071	706 aa		3.54	□□□□□ -1.84
RUD3	YOR216C	YJL043W	P47053	257 aa		3.54	□□□□□ -1.84
RUD3	YOR216C	COQ6	P53318	479 aa		3.53	□□□□□ -1.84
RUD3	YOR216C	IDP3	P53982	420 aa	Known RBP	3.53	□□□□□ -1.84
RUD3	YOR216C	CRC1	Q12289	327 aa		3.53	□□□□□ -1.84
RUD3	YOR216C	SEC3	P33332	1336 aa	Known RBP	3.52	□□□□□ -1.85
RUD3	YOR216C	CNE1	P27825	502 aa		3.52	□□□□□ -1.85
RUD3	YOR216C	EXO1	P39875	702 aa		3.52	□□□□□ -1.85
RUD3	YOR216C	YMR084W	A2P2R3	262 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	IME1	P21190	360 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	URE2	P23202	354 aa	Known RBP	3.51	□□□□□ -1.85
RUD3	YOR216C	PCL2	P25693	308 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	MRPL7	P36519	292 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	PPE1	P38796	400 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	MFM1	Q02783	413 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	COG8	Q04632	607 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	BSP1	Q06604	576 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	GIN4	Q12263	1142 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	YLR111W	Q12528	110 aa		3.51	□□□□□ -1.85
RUD3	YOR216C	YAP1	P19880	650 aa	Known RBP	3.5	□□□□□ -1.85
RUD3	YOR216C	YKU70	P32807	602 aa		3.5	□□□□□ -1.85
RUD3	YOR216C	TIM23	P32897	222 aa		3.5	□□□□□ -1.85
RUD3	YOR216C	PCM1	P38628	557 aa	Known RBP	3.5	□□□□□ -1.85
RUD3	YOR216C	YAT2	P40017	923 aa		3.5	□□□□□ -1.85
RUD3	YOR216C	BUD8	P41698	603 aa		3.5	□□□□□ -1.85
RUD3	YOR216C	EFR3	Q03653	782 aa	Known RBP	3.5	□□□□□ -1.85
RUD3	YOR216C	YDL073W	Q07454	984 aa		3.5	□□□□□ -1.85
RUD3	YOR216C	YPR089W	O13585	888 aa		3.49	□□□□□ -1.85
RUD3	YOR216C	WHI2	P12611	486 aa		3.49	□□□□□ -1.85
RUD3	YOR216C	PRP22	P24384	1145 aa	Known RBP	3.49	□□□□□ -1.85
RUD3	YOR216C	GSY2	P27472	705 aa		3.49	□□□□□ -1.85
RUD3	YOR216C	OPT1	P40897	799 aa		3.49	□□□□□ -1.85
RUD3	YOR216C	YFL015C	P43578	164 aa		3.48	□□□□□ -1.85
RUD3	YOR216C	BUD17	P53727	317 aa		3.48	□□□□□ -1.85
RUD3	YOR216C	YMR210W	Q03649	449 aa		3.48	□□□□□ -1.85
RUD3	YOR216C	YPS7	Q06325	596 aa		3.48	□□□□□ -1.85
RUD3	YOR216C	HER1	Q12276	1246 aa		3.48	□□□□□ -1.85
RUD3	YOR216C	YMR085W	P0CF18	432 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	PEX6	P33760	1030 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YKR075C	P36155	307 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	OAF1	P39720	1047 aa	Predicted RBP	3.47	□□□□□ -1.85
RUD3	YOR216C	YGR054W	P53235	642 aa	Known RBP	3.47	□□□□□ -1.85
RUD3	YOR216C	YLR407W	Q06070	228 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	RDL1	Q12305	139 aa	Known RBP	3.47	□□□□□ -1.85
RUD3	YOR216C	YOR131C	Q12486	218 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YPT1	P01123	206 aa	Known RBP	3.47	□□□□□ -1.85
RUD3	YOR216C	YER190C-B	P0CX94	160 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YEL077W-A	P0CX95	160 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YGR296C-B	P0CX96	160 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YPL283W-B	P0CX97	160 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YPR204C-A	P0CX98	160 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	SFL1	P20134	766 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	MGM1	P32266	881 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	PXA1	P41909	870 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	SPO1	P53541	631 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	TIM50	Q02776	476 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	FDC1	Q03034	503 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	CEF1	Q03654	590 aa	Predicted RBP	3.47	□□□□□ -1.85
RUD3	YOR216C	NDD1	Q08887	554 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	YPL216W	Q08964	1102 aa		3.47	□□□□□ -1.85
RUD3	YOR216C	MAL31	P38156	614 aa		3.46	□□□□□ -1.86
RUD3	YOR216C	ENP2	P48234	707 aa	Known RBP	3.46	□□□□□ -1.86
RUD3	YOR216C	RPS15	Q01855	142 aa	Known RBP	3.46	□□□□□ -1.86
RUD3	YOR216C	MRPL1	Q04599	285 aa		3.46	□□□□□ -1.86
RUD3	YOR216C	SRL1	Q08673	210 aa		3.46	□□□□□ -1.86
RUD3	YOR216C	MSH2	P25847	964 aa		3.45	□□□□□ -1.86
RUD3	YOR216C	CRG1	P38892	291 aa	RIP-Chip data	3.45	□□□□□ -1.86	not detected
RUD3	YOR216C	YIL024C	P40543	189 aa		3.45	□□□□□ -1.86
RUD3	YOR216C	SCW10	Q04951	389 aa		3.45	□□□□□ -1.86
RUD3	YOR216C	YTH1	Q06102	208 aa	Predicted RBP	3.45	□□□□□ -1.86
RUD3	YOR216C	SPN1	Q06505	410 aa	Predicted RBP	3.45	□□□□□ -1.86
RUD3	YOR216C	BUD7	Q08754	746 aa		3.45	□□□□□ -1.86
RUD3	YOR216C	RNR3	P21672	869 aa	Known RBP	3.44	□□□□□ -1.86
RUD3	YOR216C	YMR124W	P39523	943 aa	Known RBP	3.44	□□□□□ -1.86
RUD3	YOR216C	UGO1	Q03327	502 aa		3.44	□□□□□ -1.86
RUD3	YOR216C	STP4	Q07351	490 aa		3.44	□□□□□ -1.86
RUD3	YOR216C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.43	□□□□□ -1.86	not detected
RUD3	YOR216C	PRE4	P30657	266 aa		3.43	□□□□□ -1.86
RUD3	YOR216C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.43	□□□□□ -1.86	not detected
RUD3	YOR216C	FTR1	P40088	404 aa		3.43	□□□□□ -1.86
RUD3	YOR216C	TDA10	P42938	290 aa		3.43	□□□□□ -1.86
RUD3	YOR216C	SAE2	P46946	345 aa		3.43	□□□□□ -1.86
RUD3	YOR216C	SAP4	P53036	818 aa		3.43	□□□□□ -1.86
RUD3	YOR216C	SRP40	P32583	406 aa	Predicted RBP	3.42	□□□□□ -1.86
RUD3	YOR216C	YPT10	P38146	199 aa		3.42	□□□□□ -1.86
RUD3	YOR216C	CDS1	P38221	457 aa		3.42	□□□□□ -1.86
RUD3	YOR216C	FLO5	P38894	1075 aa		3.42	□□□□□ -1.86
RUD3	YOR216C	CFD1	P40558	293 aa		3.42	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 22 ms