RNA–Protein interactions for RNA: YOL006C

TOP1, Transcript of Topoisomerase I, yeast

Gene TOP1, Length 2,310 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TOP1	YOL006C	CCL1	P37366	393 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	ATG14	P38270	344 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	YBR138C	P38277	524 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	CTM1	P38818	585 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	MTG2	P38860	518 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	PRM2	P40534	656 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	NAS2	P40555	220 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	MKT1	P40850	830 aa	Known RBP	3.6	□□□□□ -1.83
TOP1	YOL006C	THI6	P41835	540 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	AAD14	P42884	376 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	HXT16	P47185	567 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	PPT1	P53043	513 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	ATG38	Q05789	226 aa	Known RBP	3.6	□□□□□ -1.83
TOP1	YOL006C	HUA2	Q12134	243 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	PTC5	Q12511	572 aa		3.6	□□□□□ -1.83
TOP1	YOL006C	CTT1	P06115	562 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	HTS1	P07263	546 aa	Known RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	RPL11A	P0C0W9	174 aa	Known RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	RPL19A	P0CX82	189 aa	Known RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	RPL19B	P0CX83	189 aa	Predicted RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	DIT1	P21623	536 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	CLB1	P24868	471 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	PIM1	P36775	1133 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	PCH2	P38126	564 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	TAF5	P38129	798 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	SMC2	P38989	1170 aa	Known RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	SSN3	P39073	555 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	OSW5	P40219	148 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	SLS1	P42900	643 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.59	□□□□□ -1.83	not detected
TOP1	YOL006C	IRC5	P43610	853 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	RAD17	P48581	401 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	GCV2	P49095	1034 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	SKP1	P52286	194 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	ALT1	P52893	592 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	PUS5	Q06244	254 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	NGL1	Q08213	363 aa	Known RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	YRM1	Q12340	786 aa		3.59	□□□□□ -1.83
TOP1	YOL006C	RPL11B	Q3E757	174 aa	Predicted RBP	3.59	□□□□□ -1.83
TOP1	YOL006C	NOT3	P06102	836 aa	Known RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	SWI6	P09959	803 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	GLN4	P13188	809 aa	Known RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.59	□□□□□ -1.84	not detected
TOP1	YOL006C	AMS1	P22855	1083 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	DBP2	P24783	546 aa	Known RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	GRR1	P24814	1151 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	OCA4	P25366	362 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	HXT4	P32467	576 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	MRT4	P33201	236 aa	Known RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	ARC19	P33204	171 aa	Known RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	YKR051W	P36142	418 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	FMP10	P40098	244 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	ATF1	P40353	525 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	YJR061W	P40355	935 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	VID28	P40547	921 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	MRX6	P48564	524 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	HFM1	P51979	1187 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	SRC1	Q03707	834 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	RBA50	Q04418	439 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	SPH1	Q06160	661 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	MCP2	Q06567	569 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	IWR1	Q07532	353 aa	Predicted RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	CIR2	Q08822	631 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	CTI6	Q08923	506 aa		3.59	□□□□□ -1.84
TOP1	YOL006C	GET3	Q12154	354 aa	Known RBP	3.59	□□□□□ -1.84
TOP1	YOL006C	CDC19	P00549	500 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	SUI3	P09064	285 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	CDC26	P14724	124 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	SIR1	P21691	654 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	TSL1	P38427	1098 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	SSU1	P41930	458 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	YFL052W	P43551	465 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	YJL171C	P46992	396 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	SNF12	P53628	566 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	GIS4	Q04233	774 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	MGR3	Q04472	501 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	RTC5	Q12108	567 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	WSC3	Q12215	556 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	RUD3	Q12234	484 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	PSY3	Q12318	242 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	YOL159C-A	Q3E769	90 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	YBR126W-A	Q8TGU7	68 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
TOP1	YOL006C	PWP1	P21304	576 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	MSP1	P28737	362 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	KNS1	P32350	737 aa	Predicted RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	SUR1	P33300	382 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	COY1	P34237	679 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	CTF13	P35203	478 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
TOP1	YOL006C	REI1	P38344	393 aa	Predicted RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	RLP7	P40693	322 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	EPL1	P43572	832 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	SIP4	P46954	829 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	PSP1	P50896	841 aa	Known RBP	3.58	□□□□□ -1.84
TOP1	YOL006C	MSN5	P52918	1224 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	DSD1	P53095	428 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	RPN14	P53196	417 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	CUL3	P53202	744 aa		3.58	□□□□□ -1.84
TOP1	YOL006C	PRO2	P54885	456 aa	Known RBP	3.58	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 28.6 ms