RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	KIN4	Q01919	800 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	YKR011C	Q02209	353 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	YML131W	Q03102	365 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	LRS4	Q04087	347 aa	Known RBP	2.78	□□□□□ -1.96
SNU114	YKL173W	GSF2	Q04697	403 aa	Known RBP	2.78	□□□□□ -1.96
SNU114	YKL173W	ENA5	Q12691	1091 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	RPS21B	Q3E754	87 aa	Known RBP	2.78	□□□□□ -1.96
SNU114	YKL173W	ESP1	Q03018	1630 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	CDC25	P04821	1589 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	HCM1	P25364	564 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	RPD3	P32561	433 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	HIS6	P40545	261 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	YOR352W	Q08816	343 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	YBR182C-A	Q8TGU6	64 aa		2.78	□□□□□ -1.96
SNU114	YKL173W	TRP4	P07285	380 aa	Predicted RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	SEC21	P32074	935 aa	Known RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	STO1	P34160	861 aa	Known RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	UBC9	P50623	157 aa	Predicted RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	PHM6	Q05637	104 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	MLC2	Q06580	163 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	SSP2	Q08646	371 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	THI21	Q08975	551 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	HSL1	P34244	1518 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	URA1	P28272	314 aa	Predicted RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	RPN12	P32496	274 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	VPS27	P40343	622 aa	Known RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	PSP2	P50109	593 aa	Known RBP	2.77	□□□□□ -1.97
SNU114	YKL173W	SUN4	P53616	420 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	ARP4	P80428	489 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	DCS2	Q12123	353 aa		2.77	□□□□□ -1.97
SNU114	YKL173W	DPB3	P27344	201 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	TOA1	P32773	286 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	CTF13	P35203	478 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	EBP2	P36049	427 aa	Known RBP	2.76	□□□□□ -1.97
SNU114	YKL173W	TRS130	Q03660	1102 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	ENT2	Q05785	613 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	COX11	P19516	300 aa	Known RBP	2.76	□□□□□ -1.97
SNU114	YKL173W	TYE7	P33122	291 aa	Predicted RBP	2.76	□□□□□ -1.97
SNU114	YKL173W	YKR051W	P36142	418 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	ACA1	P39970	489 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	RET2	P43621	546 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	MRPS35	P53292	345 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	NHX1	Q04121	633 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	VMS1	Q04311	632 aa	Known RBP	2.76	□□□□□ -1.97
SNU114	YKL173W	COG8	Q04632	607 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	HFI1	Q12060	488 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	RMP1	Q12530	201 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	Q0142	Q9ZZW4	58 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	CDC26	P14724	124 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	OAF3	P36023	863 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	NOC2	P39744	710 aa	Known RBP	2.76	□□□□□ -1.97
SNU114	YKL173W	MSE1	P48525	536 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	DAM1	P53267	343 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	HAL9	Q12180	1030 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	APM4	Q99186	491 aa		2.76	□□□□□ -1.97
SNU114	YKL173W	RKR1	Q04781	1562 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	TUB2	P02557	457 aa	Known RBP	2.75	□□□□□ -1.97
SNU114	YKL173W	YGR153W	P48238	217 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	YDR056C	Q12025	205 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	YOL114C	Q12322	202 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	YCF1	P39109	1515 aa	Known RBP	2.75	□□□□□ -1.97
SNU114	YKL173W	HSC82	P15108	705 aa	Known RBP	2.75	□□□□□ -1.97
SNU114	YKL173W	MCM10	P32354	571 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	TFC6	Q06339	672 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	YPR196W	Q06595	470 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	TRM13	Q12383	476 aa		2.75	□□□□□ -1.97
SNU114	YKL173W	YKL133C	P36066	463 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	DID4	P36108	232 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	SAP185	P40856	1058 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	CNM67	P53865	581 aa	Known RBP	2.74	□□□□□ -1.97
SNU114	YKL173W	CTF4	Q01454	927 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	LEE1	Q02799	301 aa	Known RBP	2.74	□□□□□ -1.97
SNU114	YKL173W	SKY1	Q03656	742 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	YLR040C	Q07988	224 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	BUD4	P47136	1447 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	DNF2	Q12675	1612 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	NTE1	Q04958	1679 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	PFK1	P16861	987 aa	Known RBP	2.74	□□□□□ -1.97
SNU114	YKL173W	HOP1	P20050	605 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	DAL7	P21826	554 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	SSH4	P32343	579 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	BEM3	P32873	1128 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	RKM3	P38222	552 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	MDM1	Q01846	1127 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	REH1	Q06709	432 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	PEX15	Q08215	383 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	2.74	□□□□□ -1.97	not detected
SNU114	YKL173W	GFA1	P14742	717 aa	Known RBP	2.74	□□□□□ -1.97
SNU114	YKL173W	SED4	P25365	1065 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	SCT1	P32784	759 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	MRS6	P32864	603 aa	Known RBP	2.74	□□□□□ -1.97
SNU114	YKL173W	MAL31	P38156	614 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	PUS4	P48567	403 aa	Known RBP	2.74	□□□□□ -1.97
SNU114	YKL173W	MEP3	P53390	489 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	ASI2	P53895	289 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	YDR514C	Q04408	483 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	OMS1	Q06668	471 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	YLR149C	Q99296	730 aa		2.74	□□□□□ -1.97
SNU114	YKL173W	SEC18	P18759	758 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	YKU70	P32807	602 aa		2.73	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 48.6 ms