RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C TMA108P40462 946 aa2.3□□□□□ -2.04
UFD4YKL010C TOS3P43637 560 aa2.3□□□□□ -2.04
UFD4YKL010C TRS85P46944 698 aa2.3□□□□□ -2.04
UFD4YKL010C YJL181WP46987 611 aa2.3□□□□□ -2.04
UFD4YKL010C LIF1P53150 421 aa2.3□□□□□ -2.04
UFD4YKL010C TAM41P53230 385 aa2.3□□□□□ -2.04
UFD4YKL010C CWC22P53333 577 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C YNL040WP53960 456 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C NAM8Q00539 523 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C CUS1Q02554 436 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C HEL2Q05580 639 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C FAP7Q12055 197 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C RRP6Q12149 733 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C TUB2P02557 457 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C TOP1P04786 769 aa2.3□□□□□ -2.04
UFD4YKL010C SPT2P06843 333 aaPredicted RBP2.3□□□□□ -2.04
UFD4YKL010C TIF1P10081 395 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C OM45P16547 393 aa2.3□□□□□ -2.04
UFD4YKL010C GAL11P19659 1081 aa2.3□□□□□ -2.04
UFD4YKL010C DEP1P31385 405 aa2.3□□□□□ -2.04
UFD4YKL010C ERP2P39704 215 aa2.3□□□□□ -2.04
UFD4YKL010C TDA10P42938 290 aa2.3□□□□□ -2.04
UFD4YKL010C YFL034WP43564 1073 aa2.3□□□□□ -2.04
UFD4YKL010C ZAP1P47043 880 aa2.3□□□□□ -2.04
UFD4YKL010C SHR3Q02774 210 aa2.3□□□□□ -2.04
UFD4YKL010C USA1Q03714 838 aa2.3□□□□□ -2.04
UFD4YKL010C COQ9Q05779 260 aa2.3□□□□□ -2.04
UFD4YKL010C KAP95Q06142 861 aaKnown RBP2.3□□□□□ -2.04
UFD4YKL010C NAT1P12945 854 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C RPL8AP17076 256 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C ILV6P25605 309 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C ABD1P32783 436 aaPredicted RBP2.29□□□□□ -2.04
UFD4YKL010C NDT80P38830 627 aa2.29□□□□□ -2.04
UFD4YKL010C FMS1P50264 508 aa2.29□□□□□ -2.04
UFD4YKL010C HPC2Q01448 625 aa2.29□□□□□ -2.04
UFD4YKL010C YML020WQ03722 664 aa2.29□□□□□ -2.04
UFD4YKL010C YDL124WQ07551 312 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C YLR462WO13556 202 aa2.29□□□□□ -2.04
UFD4YKL010C RAD10P06838 210 aa2.29□□□□□ -2.04
UFD4YKL010C TUB3P09734 445 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C IMA3P0CW40 589 aa2.29□□□□□ -2.04
UFD4YKL010C IMA4P0CW41 589 aa2.29□□□□□ -2.04
UFD4YKL010C RPC25P35718 212 aa2.29□□□□□ -2.04
UFD4YKL010C DBP7P36120 742 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C YHL049CP38722 271 aa2.29□□□□□ -2.04
UFD4YKL010C SAK1P38990 1142 aa2.29□□□□□ -2.04
UFD4YKL010C YEL075CP39972 122 aa2.29□□□□□ -2.04
UFD4YKL010C HMF1P40037 129 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C YER189WP40104 122 aa2.29□□□□□ -2.04
UFD4YKL010C YFL064CP43540 174 aa2.29□□□□□ -2.04
UFD4YKL010C NMD5P46970 1048 aa2.29□□□□□ -2.04
UFD4YKL010C NMA2P53204 395 aa2.29□□□□□ -2.04
UFD4YKL010C YGR111WP53265 400 aa2.29□□□□□ -2.04
UFD4YKL010C IMA2Q08295 589 aa2.29□□□□□ -2.04
UFD4YKL010C YBL111CQ3E7Y5 667 aa2.29□□□□□ -2.04
UFD4YKL010C ARG4P04076 463 aaPredicted RBP2.29□□□□□ -2.04
UFD4YKL010C RAD18P10862 487 aa2.29□□□□□ -2.04
UFD4YKL010C TPS2P31688 896 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C EFT1P32324 842 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C SAC6P32599 642 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C VPS35P34110 944 aa2.29□□□□□ -2.04
UFD4YKL010C OAF3P36023 863 aa2.29□□□□□ -2.04
UFD4YKL010C MCR1P36060 302 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C PSY2P40164 858 aa2.29□□□□□ -2.04
UFD4YKL010C MND2P40577 368 aa2.29□□□□□ -2.04
UFD4YKL010C TIM8P57744 87 aa2.29□□□□□ -2.04
UFD4YKL010C UBP3Q01477 912 aaKnown RBP RIP-Chip data2.29□□□□□ -2.04 RIP-Chip
UFD4YKL010C AIM41Q12032 185 aa2.29□□□□□ -2.04
UFD4YKL010C RPP2BP02400 110 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C GCR1P07261 785 aa2.29□□□□□ -2.04
UFD4YKL010C INO1P11986 533 aa2.29□□□□□ -2.04
UFD4YKL010C YPK1P12688 680 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C PMS1P14242 873 aa2.29□□□□□ -2.04
UFD4YKL010C SAM2P19358 384 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C HEK2P38199 381 aaKnown RBP RIP-Chip data2.29□□□□□ -2.04 RIP-Chip
UFD4YKL010C PCA1P38360 1216 aa2.29□□□□□ -2.04
UFD4YKL010C PIH1P38768 344 aa2.29□□□□□ -2.04
UFD4YKL010C YAP1801P38856 637 aa2.29□□□□□ -2.04
UFD4YKL010C SPT8P38915 602 aa2.29□□□□□ -2.04
UFD4YKL010C HUL5P53119 910 aa2.29□□□□□ -2.04
UFD4YKL010C YPR003CP53394 754 aa2.29□□□□□ -2.04
UFD4YKL010C UTP4Q06679 776 aaKnown RBP2.29□□□□□ -2.04
UFD4YKL010C YLR413WQ06689 675 aa2.29□□□□□ -2.04
UFD4YKL010C YDL121CQ07541 149 aa2.29□□□□□ -2.04
UFD4YKL010C IES4Q08561 116 aa2.29□□□□□ -2.04
UFD4YKL010C TAF3Q12297 353 aa2.29□□□□□ -2.04
UFD4YKL010C PCD1Q12524 340 aa2.29□□□□□ -2.04
UFD4YKL010C PUT4P15380 627 aa2.28□□□□□ -2.04
UFD4YKL010C KIN82P25341 720 aa2.28□□□□□ -2.04
UFD4YKL010C TFC4P33339 1025 aa2.28□□□□□ -2.04
UFD4YKL010C YBL055CP34220 418 aaPredicted RBP2.28□□□□□ -2.04
UFD4YKL010C PPS1P38148 807 aa2.28□□□□□ -2.04
UFD4YKL010C SPC72P39723 622 aa2.28□□□□□ -2.04
UFD4YKL010C RPC17P47076 161 aa2.28□□□□□ -2.04
UFD4YKL010C MIG2P53035 382 aa2.28□□□□□ -2.04
UFD4YKL010C STE20Q03497 939 aaKnown RBP2.28□□□□□ -2.04
UFD4YKL010C SPC24Q04477 213 aa2.28□□□□□ -2.04
UFD4YKL010C SUE1Q06524 206 aa2.28□□□□□ -2.04
UFD4YKL010C SUB2Q07478 446 aaKnown RBP2.28□□□□□ -2.04
UFD4YKL010C SPO75Q07798 868 aa2.28□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 766.8 ms