RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	HCA4	P20448	770 aa	Known RBP	5.77	□□□□□ -1.49
CAF16	YFL028C	SEC65	P29478	273 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	HEM12	P32347	362 aa	Predicted RBP	5.77	□□□□□ -1.49
CAF16	YFL028C	MND2	P40577	368 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	PIP2	P52960	996 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	PCL10	P53124	433 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	PBP1	P53297	722 aa	Known RBP	5.77	□□□□□ -1.49
CAF16	YFL028C	YPL062W	Q02781	134 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	SKY1	Q03656	742 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	ATG16	Q03818	150 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	ECM16	Q04217	1267 aa	Known RBP	5.77	□□□□□ -1.49
CAF16	YFL028C	DCS2	Q12123	353 aa		5.77	□□□□□ -1.49
CAF16	YFL028C	GAL1	P04385	528 aa		5.76	□□□□□ -1.49
CAF16	YFL028C	PIF1	P07271	859 aa		5.76	□□□□□ -1.49
CAF16	YFL028C	TRX2	P22803	104 aa	Known RBP	5.76	□□□□□ -1.49
CAF16	YFL028C	SER1	P33330	395 aa	Known RBP	5.76	□□□□□ -1.49
CAF16	YFL028C	OAF3	P36023	863 aa		5.76	□□□□□ -1.49
CAF16	YFL028C	SSY5	P47002	699 aa		5.76	□□□□□ -1.49
CAF16	YFL028C	SLD3	P53135	668 aa		5.76	□□□□□ -1.49
CAF16	YFL028C	GTF1	P53260	183 aa	Predicted RBP	5.76	□□□□□ -1.49
CAF16	YFL028C	WHI4	Q07655	649 aa	Known RBP	5.76	□□□□□ -1.49
CAF16	YFL028C	HFI1	Q12060	488 aa		5.76	□□□□□ -1.49
CAF16	YFL028C	NUP192	P47054	1683 aa		5.75	□□□□□ -1.49
CAF16	YFL028C	TRP3	P00937	484 aa		5.75	□□□□□ -1.49
CAF16	YFL028C	MAL31	P38156	614 aa		5.75	□□□□□ -1.49
CAF16	YFL028C	EMP65	P40085	556 aa		5.75	□□□□□ -1.49
CAF16	YFL028C	ARP4	P80428	489 aa		5.75	□□□□□ -1.49
CAF16	YFL028C	ECM38	Q05902	660 aa	Predicted RBP	5.75	□□□□□ -1.49
CAF16	YFL028C	FBP1	P09201	348 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	PGI1	P12709	554 aa	Known RBP	5.74	□□□□□ -1.49
CAF16	YFL028C	KCC4	P25389	1037 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	PTP2	P29461	750 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	YKU70	P32807	602 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	YKR075C	P36155	307 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	TRZ1	P36159	838 aa	Predicted RBP	5.74	□□□□□ -1.49
CAF16	YFL028C	FAT1	P38225	669 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	ETP1	P38748	585 aa	Known RBP	5.74	□□□□□ -1.49
CAF16	YFL028C	YHR078W	P38799	552 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	SAK1	P38990	1142 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	ICP55	P40051	511 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	MTR3	P48240	250 aa	Predicted RBP	5.74	□□□□□ -1.49
CAF16	YFL028C	RNR4	P49723	345 aa	Known RBP	5.74	□□□□□ -1.49
CAF16	YFL028C	UBX4	P54730	416 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	CEF1	Q03654	590 aa	Predicted RBP	5.74	□□□□□ -1.49
CAF16	YFL028C	PEX15	Q08215	383 aa		5.74	□□□□□ -1.49
CAF16	YFL028C	ATG19	P35193	415 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	YKL133C	P36066	463 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	RIM4	P38741	713 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	CTF8	P38877	133 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	SDP1	P40479	209 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	RSC8	P43609	557 aa	Known RBP	5.73	□□□□□ -1.49
CAF16	YFL028C	YJR039W	P47107	1121 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	GCV2	P49095	1034 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	TAN1	P53072	289 aa	Predicted RBP	5.73	□□□□□ -1.49
CAF16	YFL028C	GPD1	Q00055	391 aa	Known RBP	5.73	□□□□□ -1.49
CAF16	YFL028C	VPS72	Q03388	795 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	ROT1	Q03691	256 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	TPO1	Q07824	586 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	APM4	Q99186	491 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	RTC1	Q08281	1341 aa		5.73	□□□□□ -1.49
CAF16	YFL028C	BCK1	Q01389	1478 aa		5.72	□□□□□ -1.49
CAF16	YFL028C	TOS1	P38288	455 aa		5.72	□□□□□ -1.49
CAF16	YFL028C	SSZ1	P38788	538 aa	Known RBP	5.72	□□□□□ -1.49
CAF16	YFL028C	PZF1	P39933	429 aa		5.72	□□□□□ -1.49
CAF16	YFL028C	BRE5	P53741	515 aa	Known RBP	5.72	□□□□□ -1.49
CAF16	YFL028C	LEE1	Q02799	301 aa	Known RBP	5.72	□□□□□ -1.49
CAF16	YFL028C	ASM4	Q05166	528 aa		5.72	□□□□□ -1.49
CAF16	YFL028C	MLC2	Q06580	163 aa		5.72	□□□□□ -1.49
CAF16	YFL028C	YOR352W	Q08816	343 aa		5.72	□□□□□ -1.49
CAF16	YFL028C	PUS1	Q12211	544 aa	Known RBP	5.72	□□□□□ -1.49
CAF16	YFL028C	KRE5	P22023	1365 aa		5.71	□□□□□ -1.5
CAF16	YFL028C	PFK1	P16861	987 aa	Known RBP	5.71	□□□□□ -1.5
CAF16	YFL028C	SED4	P25365	1065 aa		5.71	□□□□□ -1.5
CAF16	YFL028C	YKR073C	P36153	106 aa		5.71	□□□□□ -1.5
CAF16	YFL028C	MIP6	P38760	659 aa	Known RBP	5.71	□□□□□ -1.5
CAF16	YFL028C	YGR021W	P53212	290 aa		5.71	□□□□□ -1.5
CAF16	YFL028C	ORC4	P54791	529 aa		5.71	□□□□□ -1.5
CAF16	YFL028C	MED7	Q08278	222 aa		5.71	□□□□□ -1.5
CAF16	YFL028C	CFT1	Q06632	1357 aa	Known RBP	5.7	□□□□□ -1.5
CAF16	YFL028C	GLN4	P13188	809 aa	Known RBP	5.7	□□□□□ -1.5
CAF16	YFL028C	ATP12	P22135	325 aa		5.7	□□□□□ -1.5
CAF16	YFL028C	HIS6	P40545	261 aa		5.7	□□□□□ -1.5
CAF16	YFL028C	ORC3	P54790	616 aa		5.7	□□□□□ -1.5
CAF16	YFL028C	PLB2	Q03674	706 aa		5.7	□□□□□ -1.5
CAF16	YFL028C	RRP6	Q12149	733 aa	Known RBP	5.7	□□□□□ -1.5
CAF16	YFL028C	UPC2	Q12151	913 aa		5.7	□□□□□ -1.5
CAF16	YFL028C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.7	□□□□□ -1.5	not detected
CAF16	YFL028C	SWI6	P09959	803 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	DPB3	P27344	201 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	YHR202W	P38887	602 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	IES5	P40060	125 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	VID28	P40547	921 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	PFA3	P42836	336 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	NOP15	P53927	220 aa	Predicted RBP	5.69	□□□□□ -1.5
CAF16	YFL028C	MUS81	Q04149	632 aa	Predicted RBP	5.69	□□□□□ -1.5
CAF16	YFL028C	YLR407W	Q06070	228 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	SGD1	Q06132	899 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	ADY3	Q07732	790 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	YDL177C	Q12257	170 aa		5.69	□□□□□ -1.5
CAF16	YFL028C	RAD9	P14737	1309 aa		5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 10.9 ms