RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	YHR078W	P38799	552 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	MET12	P46151	657 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	CTH1	P47976	325 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	GCV2	P49095	1034 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	PSP2	P50109	593 aa	Known RBP	4.2	□□□□□ -1.74
WHI3	YNL197C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
WHI3	YNL197C	SEC65	P29478	273 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	AKL1	P38080	1108 aa	Known RBP	4.2	□□□□□ -1.74
WHI3	YNL197C	NCS6	P53088	359 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	UBX4	P54730	416 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	SLU7	Q02775	382 aa	Known RBP	4.2	□□□□□ -1.74
WHI3	YNL197C	PEX15	Q08215	383 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	BUD21	Q08492	214 aa	Predicted RBP	4.2	□□□□□ -1.74
WHI3	YNL197C	HMI1	Q12039	706 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	YPR027C	Q12079	277 aa		4.2	□□□□□ -1.74
WHI3	YNL197C	KAR1	P11927	433 aa		4.19	□□□□□ -1.74
WHI3	YNL197C	FOL2	P51601	243 aa	Known RBP	4.19	□□□□□ -1.74
WHI3	YNL197C	SPC105	P53148	917 aa		4.19	□□□□□ -1.74
WHI3	YNL197C	PTA1	Q01329	785 aa	Predicted RBP	4.19	□□□□□ -1.74
WHI3	YNL197C	MUS81	Q04149	632 aa	Predicted RBP	4.19	□□□□□ -1.74
WHI3	YNL197C	DUS4	Q06063	367 aa		4.19	□□□□□ -1.74
WHI3	YNL197C	MED7	Q08278	222 aa		4.19	□□□□□ -1.74
WHI3	YNL197C	PGI1	P12709	554 aa	Known RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	GLN4	P13188	809 aa	Known RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	KCC4	P25389	1037 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	TOS1	P38288	455 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	GID8	P40208	455 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	PFA3	P42836	336 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	CHA4	P43634	648 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	SLD3	P53135	668 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	SVL3	Q03088	825 aa	Known RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	ROT1	Q03691	256 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	YLR407W	Q06070	228 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	YPL277C	Q08989	487 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	TRX2	P22803	104 aa	Known RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	PTP2	P29461	750 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	SAK1	P38990	1142 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	EMP65	P40085	556 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	YGR021W	P53212	290 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	GTF1	P53260	183 aa	Predicted RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	VPS62	P53285	467 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	ASI2	P53895	289 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	NOP15	P53927	220 aa	Predicted RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	ATG16	Q03818	150 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	SGD1	Q06132	899 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	MLC2	Q06580	163 aa		4.18	□□□□□ -1.74
WHI3	YNL197C	RRP6	Q12149	733 aa	Known RBP	4.18	□□□□□ -1.74
WHI3	YNL197C	HIS5	P07172	385 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	MSS18	P08593	268 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	APA1	P16550	321 aa	Known RBP	4.17	□□□□□ -1.74
WHI3	YNL197C	SEC21	P32074	935 aa	Known RBP	4.17	□□□□□ -1.74
WHI3	YNL197C	LAM1	P38851	1228 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	YHR202W	P38887	602 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	MSS4	P38994	779 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	IES1	P43579	692 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	BRE4	Q07660	1125 aa		4.17	□□□□□ -1.74
WHI3	YNL197C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	RIP-Chip
WHI3	YNL197C	YKU70	P32807	602 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	YHL041W	P38730	149 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	MEF2	P39677	819 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	CNM67	P53865	581 aa	Known RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	SUB1	P54000	292 aa	Known RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	CEG1	Q01159	459 aa	Predicted RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	CEF1	Q03654	590 aa	Predicted RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	YDR132C	Q03900	495 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	YPS7	Q06325	596 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	IME1	P21190	360 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	SED4	P25365	1065 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	EMC1	P25574	760 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	MF(ALPHA)2	P32435	120 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	VHR1	P40522	640 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	VID28	P40547	921 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	SET2	P46995	733 aa	Known RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	MTR3	P48240	250 aa	Predicted RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	RCR2	Q03446	210 aa	Known RBP	4.16	□□□□□ -1.74
WHI3	YNL197C	OMS1	Q06668	471 aa		4.16	□□□□□ -1.74
WHI3	YNL197C	IMG2	P25642	146 aa	Predicted RBP	4.15	□□□□□ -1.74
WHI3	YNL197C	HXT4	P32467	576 aa		4.15	□□□□□ -1.74
WHI3	YNL197C	KTR4	P38131	464 aa		4.15	□□□□□ -1.74
WHI3	YNL197C	SIC1	P38634	284 aa		4.15	□□□□□ -1.74
WHI3	YNL197C	QRI7	P43122	407 aa		4.15	□□□□□ -1.74
WHI3	YNL197C	IRC5	P43610	853 aa		4.15	□□□□□ -1.74
WHI3	YNL197C	RNR4	P49723	345 aa	Known RBP	4.15	□□□□□ -1.74
WHI3	YNL197C	SNO2	P53823	222 aa		4.15	□□□□□ -1.74
WHI3	YNL197C	HMO1	Q03973	246 aa	Known RBP	4.15	□□□□□ -1.74
WHI3	YNL197C	ADE2	P21264	571 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	YPT7	P32939	208 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	YKL133C	P36066	463 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	PZF1	P39933	429 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	EAF5	P39995	279 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	HIS6	P40545	261 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	MRPS35	P53292	345 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	YAP6	Q03935	383 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	STP4	Q07351	490 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	NOP12	Q08208	459 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	NPC2	Q12408	173 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	HOP1	P20050	605 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	HCA4	P20448	770 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	LRG1	P35688	1017 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	YKL222C	P35995	705 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 53.8 ms