RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP11	YKR098C	SSY5	P47002	699 aa		2.76	□□□□□ -1.97
UBP11	YKR098C	FOL2	P51601	243 aa	Known RBP	2.76	□□□□□ -1.97
UBP11	YKR098C	WHI4	Q07655	649 aa	Known RBP	2.76	□□□□□ -1.97
UBP11	YKR098C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	2.76	□□□□□ -1.97	not detected
UBP11	YKR098C	SWI6	P09959	803 aa		2.75	□□□□□ -1.97
UBP11	YKR098C	ATP12	P22135	325 aa		2.75	□□□□□ -1.97
UBP11	YKR098C	YKU70	P32807	602 aa		2.75	□□□□□ -1.97
UBP11	YKR098C	ICP55	P40051	511 aa		2.75	□□□□□ -1.97
UBP11	YKR098C	URM1	P40554	99 aa	Predicted RBP	2.75	□□□□□ -1.97
UBP11	YKR098C	LEE1	Q02799	301 aa	Known RBP	2.75	□□□□□ -1.97
UBP11	YKR098C	ADY3	Q07732	790 aa		2.75	□□□□□ -1.97
UBP11	YKR098C	TRP3	P00937	484 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	DPB3	P27344	201 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	AKL1	P38080	1108 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	YHL041W	P38730	149 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	RIM4	P38741	713 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	YHR078W	P38799	552 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	BEM4	P39011	633 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	HIS6	P40545	261 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	PLB2	Q03674	706 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	ASM4	Q05166	528 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	YDL121C	Q07541	149 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	UPC2	Q12151	913 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	GLT1	Q12680	2145 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	GLN4	P13188	809 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	STE14	P32584	239 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	YKL222C	P35995	705 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	SAK1	P38990	1142 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	MET12	P46151	657 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	RNR4	P49723	345 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	CNM67	P53865	581 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	GPD1	Q00055	391 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	SVL3	Q03088	825 aa	Known RBP	2.74	□□□□□ -1.97
UBP11	YKR098C	YLR407W	Q06070	228 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	TPO1	Q07824	586 aa		2.74	□□□□□ -1.97
UBP11	YKR098C	MSS18	P08593	268 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	CDC26	P14724	124 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	APA1	P16550	321 aa	Known RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	PFK1	P16861	987 aa	Known RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	HCA4	P20448	770 aa	Known RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	YKR073C	P36153	106 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	ETP1	P38748	585 aa	Known RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	YHR202W	P38887	602 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	2.73	□□□□□ -1.97	not detected
UBP11	YKR098C	BFA1	P47113	574 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	MTR3	P48240	250 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	GCV2	P49095	1034 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	NOP15	P53927	220 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	MUS81	Q04149	632 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	YDL177C	Q12257	170 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	SED4	P25365	1065 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	YKR075C	P36155	307 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	KTR4	P38131	464 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	PZF1	P39933	429 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	VID28	P40547	921 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	PFA3	P42836	336 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	QRI7	P43122	407 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	SET2	P46995	733 aa	Known RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	TAN1	P53072	289 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	NCS6	P53088	359 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	GTF1	P53260	183 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	PAP2	P53632	584 aa	Known RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	ORC4	P54791	529 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	CEG1	Q01159	459 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP11	YKR098C	ROT1	Q03691	256 aa		2.73	□□□□□ -1.97
UBP11	YKR098C	HIS5	P07172	385 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	CDC6	P09119	513 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	TUB3	P09734	445 aa	Known RBP	2.72	□□□□□ -1.97
UBP11	YKR098C	HOP1	P20050	605 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	PRP4	P20053	465 aa	Known RBP	2.72	□□□□□ -1.97
UBP11	YKR098C	GID8	P40208	455 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	VHR1	P40522	640 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	IES1	P43579	692 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	CHA4	P43634	648 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	ASI2	P53895	289 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	SGD1	Q06132	899 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	OMS1	Q06668	471 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	MED7	Q08278	222 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	HMI1	Q12039	706 aa		2.72	□□□□□ -1.97
UBP11	YKR098C	IMG2	P25642	146 aa	Predicted RBP	2.71	□□□□□ -1.97
UBP11	YKR098C	DBF20	P32328	564 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	MF(ALPHA)2	P32435	120 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	HXT4	P32467	576 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	MRS6	P32864	603 aa	Known RBP	2.71	□□□□□ -1.97
UBP11	YKR098C	PTH2	P34222	208 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	TOS1	P38288	455 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	SRP68	P38687	599 aa	Known RBP	2.71	□□□□□ -1.97
UBP11	YKR098C	LAM1	P38851	1228 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	MSS4	P38994	779 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	EAF5	P39995	279 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	IRC5	P43610	853 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	YMR210W	Q03649	449 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	YPS7	Q06325	596 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	NGL1	Q08213	363 aa	Known RBP	2.71	□□□□□ -1.97
UBP11	YKR098C	CWC2	Q12046	339 aa	Predicted RBP	2.71	□□□□□ -1.97
UBP11	YKR098C	YOL114C	Q12322	202 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	NKP1	Q12493	238 aa		2.71	□□□□□ -1.97
UBP11	YKR098C	RPS17A	P02407	136 aa	Known RBP	2.71	□□□□□ -1.98
UBP11	YKR098C	RPP2A	P05319	106 aa	Known RBP	2.71	□□□□□ -1.98
UBP11	YKR098C	RPS17B	P14127	136 aa	Known RBP	2.71	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 34 ms