RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	SGM1	P47166	707 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	PSP2	P50109	593 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	LSC2	P53312	427 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	ARK1	P53974	638 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	ROD1	Q02805	837 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	SPO71	Q03868	1245 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	COQ9	Q05779	260 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	ATG26	Q06321	1198 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	SPP382	Q06411	708 aa	Predicted RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	DBP10	Q12389	995 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	DED1	P06634	604 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	PCK1	P10963	549 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	HMG1	P12683	1054 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	SEC23	P15303	768 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	DPB3	P27344	201 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	YKL091C	P33324	310 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	BCD1	P38772	366 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	HUL4	P40985	892 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	AZR1	P50080	613 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	YGR237C	P50089	785 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	FOL2	P51601	243 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	TOF1	P53840	1238 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	YNL115C	P53925	644 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	SSL2	Q00578	843 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	SXM1	Q04175	944 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	HCR1	Q05775	265 aa	Known RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	NOC3	Q07896	663 aa	Predicted RBP	5.27	□□□□□ -1.57
DOA1	YKL213C	TFC8	Q12308	588 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	ATG11	Q12527	1178 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	LSO1	Q3E827	93 aa		5.27	□□□□□ -1.57
DOA1	YKL213C	DBP5	P20449	482 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	UBC1	P21734	215 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	RPC53	P25441	422 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	EFT1	P32324	842 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	MRPL10	P36520	322 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	ADE17	P38009	592 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	EXO84	P38261	753 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	EFM2	P38347	419 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	SWD1	P39706	426 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	EAF5	P39995	279 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	BIM1	P40013	344 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	SDS3	P40505	327 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	YFL034W	P43564	1073 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	TIM54	P47045	478 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	REX2	P54964	269 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	YML119W	Q03208	357 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	LCD1	Q04377	747 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	GFD1	Q04839	188 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	ORM2	Q06144	216 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	CUR1	Q06469	252 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	YPL216W	Q08964	1102 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	YPL277C	Q08989	487 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	OM45	P16547	393 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	PHO84	P25297	587 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	YSC83	P32792	385 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	SMY2	P32909	740 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	ERC1	P38767	581 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	INP51	P40559	946 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	AIP1	P46680	615 aa	Known RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	AVT1	P47082	602 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	NBP1	P52919	319 aa	Predicted RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	CAF130	P53280	1122 aa	Predicted RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	PXR1	P53335	271 aa	Predicted RBP	5.26	□□□□□ -1.57
DOA1	YKL213C	TCO89	Q08921	799 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	YDR034W-B	Q6Q5X2	51 aa		5.26	□□□□□ -1.57
DOA1	YKL213C	RPB4	P20433	221 aa	Predicted RBP	5.25	□□□□□ -1.57
DOA1	YKL213C	DAL7	P21826	554 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	AFT1	P22149	690 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.25	□□□□□ -1.57	not detected
DOA1	YKL213C	CAD1	P24813	409 aa	Known RBP	5.25	□□□□□ -1.57
DOA1	YKL213C	SPT5	P27692	1063 aa	Known RBP	5.25	□□□□□ -1.57
DOA1	YKL213C	HIR2	P32480	875 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	COT1	P32798	439 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	UBP13	P38187	747 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	PSY4	P38193	441 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	TVP23	P38962	199 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	MEF2	P39677	819 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	JHD1	P40034	492 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	TOS3	P43637	560 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	SVL3	Q03088	825 aa	Known RBP	5.25	□□□□□ -1.57
DOA1	YKL213C	HEH2	Q03281	663 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	WAR1	Q03631	944 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	PMT7	Q06644	662 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	YOL075C	Q08234	1294 aa		5.25	□□□□□ -1.57
DOA1	YKL213C	YMR084W	A2P2R3	262 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	CDC37	P06101	506 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	PHO8	P11491	566 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	MRC1	P25588	1096 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	TRK2	P28584	889 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	VPS35	P34110	944 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	YEL1	P34225	687 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	GUA1	P38625	525 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	BEM4	P39011	633 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	ALD5	P40047	520 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	UTP18	P40362	594 aa	Predicted RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	ACF4	P47129	309 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	RTT102	P53330	157 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	PNG1	Q02890	363 aa		5.24	□□□□□ -1.57
DOA1	YKL213C	EBS1	Q03466	884 aa	Known RBP	5.24	□□□□□ -1.57
DOA1	YKL213C	IES4	Q08561	116 aa		5.24	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 118.3 ms