RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W NCB2Q92317 146 aa8.52□□□□□ -1.05
UFD1YGR048W COQ4O13525 335 aa8.51□□□□□ -1.05
UFD1YGR048W HXK1P04806 485 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W HIS3P06633 220 aa8.51□□□□□ -1.05
UFD1YGR048W RPS6AP0CX37 236 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W RPS6BP0CX38 236 aaPredicted RBP8.51□□□□□ -1.05
UFD1YGR048W SPO12P17123 173 aa8.51□□□□□ -1.05
UFD1YGR048W OSM1P21375 501 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W SEC15P22224 910 aa8.51□□□□□ -1.05
UFD1YGR048W SEC21P32074 935 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W YET1P35723 206 aa8.51□□□□□ -1.05
UFD1YGR048W JNM1P36224 373 aa8.51□□□□□ -1.05
UFD1YGR048W UBP13P38187 747 aa8.51□□□□□ -1.05
UFD1YGR048W SIP3P38717 1229 aa8.51□□□□□ -1.05
UFD1YGR048W PDS1P40316 373 aaPredicted RBP8.51□□□□□ -1.05
UFD1YGR048W NOP9P47077 666 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W COS6P53344 381 aa8.51□□□□□ -1.05
UFD1YGR048W HST3P53687 447 aa8.51□□□□□ -1.05
UFD1YGR048W ADE16P54113 591 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W RSM28Q03430 361 aa8.51□□□□□ -1.05
UFD1YGR048W CAB1Q04430 367 aa8.51□□□□□ -1.05
UFD1YGR048W GTB1Q04924 702 aa8.51□□□□□ -1.05
UFD1YGR048W CSR1Q06705 408 aaKnown RBP8.51□□□□□ -1.05
UFD1YGR048W AFT2Q08957 416 aa8.51□□□□□ -1.05
UFD1YGR048W SPO21Q12411 609 aa8.51□□□□□ -1.05
UFD1YGR048W GCN3P14741 305 aa8.5□□□□□ -1.05
UFD1YGR048W CNA1P23287 553 aa8.5□□□□□ -1.05
UFD1YGR048W CLB2P24869 491 aa8.5□□□□□ -1.05
UFD1YGR048W GDA1P32621 518 aa8.5□□□□□ -1.05
UFD1YGR048W MRE11P32829 692 aa8.5□□□□□ -1.05
UFD1YGR048W SEC6P32844 805 aa8.5□□□□□ -1.05
UFD1YGR048W NIP100P33420 868 aa8.5□□□□□ -1.05
UFD1YGR048W FCY21P40039 528 aa8.5□□□□□ -1.05
UFD1YGR048W UBP15P50101 1230 aa8.5□□□□□ -1.05
UFD1YGR048W MLC1P53141 149 aa8.5□□□□□ -1.05
UFD1YGR048W YGR054WP53235 642 aaKnown RBP8.5□□□□□ -1.05
UFD1YGR048W DML1Q03652 475 aa8.5□□□□□ -1.05
UFD1YGR048W YDR179W-AQ03983 463 aa8.5□□□□□ -1.05
UFD1YGR048W TAF3Q12297 353 aa8.5□□□□□ -1.05
UFD1YGR048W HSP30P25619 332 aa8.49□□□□□ -1.05
UFD1YGR048W APL1P27351 700 aa8.49□□□□□ -1.05
UFD1YGR048W YJU2P28320 278 aaPredicted RBP8.49□□□□□ -1.05
UFD1YGR048W SEC20P28791 383 aa8.49□□□□□ -1.05
UFD1YGR048W SAC6P32599 642 aaKnown RBP8.49□□□□□ -1.05
UFD1YGR048W UBC6P33296 250 aaPredicted RBP8.49□□□□□ -1.05
UFD1YGR048W GGA2P38817 585 aaKnown RBP8.49□□□□□ -1.05
UFD1YGR048W MPT5P39016 859 aaKnown RBP RIP-Chip data8.49□□□□□ -1.05not detected
UFD1YGR048W IRR1P40541 1150 aa8.49□□□□□ -1.05
UFD1YGR048W JJJ2P46997 583 aa8.49□□□□□ -1.05
UFD1YGR048W RPM2Q02773 1202 aa8.49□□□□□ -1.05
UFD1YGR048W URH1Q04179 340 aa8.49□□□□□ -1.05
UFD1YGR048W YLR287CQ05881 355 aa8.49□□□□□ -1.05
UFD1YGR048W RSA1Q08932 381 aa8.49□□□□□ -1.05
UFD1YGR048W RIO1Q12196 484 aaKnown RBP8.49□□□□□ -1.05
UFD1YGR048W PGA3Q12746 312 aaKnown RBP8.49□□□□□ -1.05
UFD1YGR048W TUS1Q06412 1307 aa8.49□□□□□ -1.05
UFD1YGR048W SEC63P14906 663 aa8.48□□□□□ -1.05
UFD1YGR048W RGP1P16664 663 aa8.48□□□□□ -1.05
UFD1YGR048W UBA1P22515 1024 aaKnown RBP8.48□□□□□ -1.05
UFD1YGR048W ILV6P25605 309 aaKnown RBP8.48□□□□□ -1.05
UFD1YGR048W HXT1P32465 570 aa8.48□□□□□ -1.05
UFD1YGR048W HCS1P34243 683 aa8.48□□□□□ -1.05
UFD1YGR048W RCN1P36054 211 aa8.48□□□□□ -1.05
UFD1YGR048W PCF11P39081 626 aaPredicted RBP8.48□□□□□ -1.05
UFD1YGR048W SDS3P40505 327 aa8.48□□□□□ -1.05
UFD1YGR048W ECM23Q02710 187 aa8.48□□□□□ -1.05
UFD1YGR048W YPQ2Q06328 317 aa8.48□□□□□ -1.05
UFD1YGR048W YPR172WQ06608 200 aa8.48□□□□□ -1.05
UFD1YGR048W BBP1Q12365 385 aa8.48□□□□□ -1.05
UFD1YGR048W YML002WP0CF17 737 aa8.47□□□□□ -1.05
UFD1YGR048W SUP45P12385 437 aaKnown RBP8.47□□□□□ -1.05
UFD1YGR048W MRP7P12687 371 aa8.47□□□□□ -1.05
UFD1YGR048W URA4P20051 364 aa8.47□□□□□ -1.05
UFD1YGR048W AFT1P22149 690 aa8.47□□□□□ -1.05
UFD1YGR048W ADY2P25613 283 aa8.47□□□□□ -1.05
UFD1YGR048W YCR016WP25617 290 aaKnown RBP8.47□□□□□ -1.05
UFD1YGR048W NAM7P30771 971 aaKnown RBP8.47□□□□□ -1.05
UFD1YGR048W EFT1P32324 842 aaKnown RBP8.47□□□□□ -1.05
UFD1YGR048W AFG2P32794 780 aa8.47□□□□□ -1.05
UFD1YGR048W SMC1P32908 1225 aa8.47□□□□□ -1.05
UFD1YGR048W COY1P34237 679 aa8.47□□□□□ -1.05
UFD1YGR048W UGA2P38067 497 aa8.47□□□□□ -1.05
UFD1YGR048W MUM2P38236 366 aa8.47□□□□□ -1.05
UFD1YGR048W VMA22P38784 181 aa8.47□□□□□ -1.05
UFD1YGR048W STM1P39015 273 aaKnown RBP8.47□□□□□ -1.05
UFD1YGR048W JEM1P40358 645 aa8.47□□□□□ -1.05
UFD1YGR048W YJR054WP47114 497 aa8.47□□□□□ -1.05
UFD1YGR048W RFX1P48743 811 aa8.47□□□□□ -1.05
UFD1YGR048W CUE3P53137 624 aaKnown RBP8.47□□□□□ -1.05
UFD1YGR048W FIN1Q03898 291 aa8.47□□□□□ -1.05
UFD1YGR048W SHE9Q04172 456 aa8.47□□□□□ -1.05
UFD1YGR048W SOV1Q04748 898 aa8.47□□□□□ -1.05
UFD1YGR048W DON1Q05610 365 aa8.47□□□□□ -1.05
UFD1YGR048W MCP2Q06567 569 aa8.47□□□□□ -1.05
UFD1YGR048W YLR001CQ07895 862 aa8.47□□□□□ -1.05
UFD1YGR048W RKM1Q08961 583 aaPredicted RBP8.47□□□□□ -1.05
UFD1YGR048W LAM4P38800 1345 aa8.47□□□□□ -1.05
UFD1YGR048W TY1B-NL2Q99337 1749 aaKnown RBP8.46□□□□□ -1.05
UFD1YGR048W HEM1P09950 548 aaPredicted RBP8.46□□□□□ -1.06
UFD1YGR048W HMG1P12683 1054 aa8.46□□□□□ -1.06
Retrieved 100 of 5,963 RNA–protein pairs in 17 ms