RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	MIC60	P36112	540 aa		16.91	■□□□□ 0.3
CCC1	YLR220W	SHM1	P37292	490 aa	Predicted RBP	16.91	■□□□□ 0.3
CCC1	YLR220W	ORC5	P50874	479 aa		16.91	■□□□□ 0.3
CCC1	YLR220W	POT1	P27796	417 aa	Known RBP RIP-Chip data	16.9	■□□□□ 0.3	not detected
CCC1	YLR220W	YAP1801	P38856	637 aa		16.9	■□□□□ 0.3
CCC1	YLR220W	NPP2	P39997	493 aa		16.9	■□□□□ 0.3
CCC1	YLR220W	PHO13	P19881	312 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	MUD1	P32605	298 aa	Known RBP	16.89	■□□□□ 0.29
CCC1	YLR220W	FIR1	P40020	876 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	INP51	P40559	946 aa	Known RBP	16.89	■□□□□ 0.29
CCC1	YLR220W	SGM1	P47166	707 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	TIM8	P57744	87 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	TRS130	Q03660	1102 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	UTP14	Q04500	899 aa	Known RBP	16.89	■□□□□ 0.29
CCC1	YLR220W	SPO75	Q07798	868 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	MLH2	Q07980	695 aa		16.89	■□□□□ 0.29
CCC1	YLR220W	COX4	P04037	155 aa		16.88	■□□□□ 0.29
CCC1	YLR220W	RPS6A	P0CX37	236 aa	Known RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	RPS6B	P0CX38	236 aa	Predicted RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	CHS2	P14180	963 aa		16.88	■□□□□ 0.29
CCC1	YLR220W	VMA1	P17255	1071 aa	Known RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	ADE2	P21264	571 aa	Known RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	SKG6	P32900	734 aa	Predicted RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	BUD2	P33314	1104 aa		16.88	■□□□□ 0.29
CCC1	YLR220W	RPC25	P35718	212 aa		16.88	■□□□□ 0.29
CCC1	YLR220W	VID24	P38263	362 aa		16.88	■□□□□ 0.29
CCC1	YLR220W	MGA2	P40578	1113 aa		16.88	■□□□□ 0.29
CCC1	YLR220W	ASN1	P49089	572 aa	Known RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	DOT1	Q04089	582 aa	Known RBP	16.88	■□□□□ 0.29
CCC1	YLR220W	SSB1	P11484	613 aa	Known RBP	16.87	■□□□□ 0.29
CCC1	YLR220W	FUB1	P25659	250 aa		16.87	■□□□□ 0.29
CCC1	YLR220W	WHI3	P34761	661 aa	Known RBP	16.87	■□□□□ 0.29
CCC1	YLR220W	GRS1	P38088	690 aa	Known RBP	16.87	■□□□□ 0.29
CCC1	YLR220W	POA1	P38218	177 aa		16.87	■□□□□ 0.29
CCC1	YLR220W	SSB2	P40150	613 aa	Known RBP	16.87	■□□□□ 0.29
CCC1	YLR220W	GIR2	Q03768	265 aa	Predicted RBP	16.87	■□□□□ 0.29
CCC1	YLR220W	GLN3	P18494	730 aa		16.86	■□□□□ 0.29
CCC1	YLR220W	MSH3	P25336	1018 aa		16.86	■□□□□ 0.29
CCC1	YLR220W	MMS4	P38257	691 aa		16.86	■□□□□ 0.29
CCC1	YLR220W	FYV8	P46949	817 aa	Known RBP	16.86	■□□□□ 0.29
CCC1	YLR220W	HSH155	P49955	971 aa	Known RBP	16.86	■□□□□ 0.29
CCC1	YLR220W	VPS75	P53853	264 aa		16.86	■□□□□ 0.29
CCC1	YLR220W	RPT1	P33299	467 aa	Known RBP	16.85	■□□□□ 0.29
CCC1	YLR220W	BRL1	P38770	471 aa		16.85	■□□□□ 0.29
CCC1	YLR220W	SPT8	P38915	602 aa		16.85	■□□□□ 0.29
CCC1	YLR220W	COS5	P47187	383 aa		16.85	■□□□□ 0.29
CCC1	YLR220W	HFM1	P51979	1187 aa		16.85	■□□□□ 0.29
CCC1	YLR220W	CWC2	Q12046	339 aa	Predicted RBP	16.85	■□□□□ 0.29
CCC1	YLR220W	PCD1	Q12524	340 aa		16.85	■□□□□ 0.29
CCC1	YLR220W	SWI6	P09959	803 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	MCM2	P29469	868 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	SEC65	P29478	273 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	UBX7	P38349	436 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	16.84	■□□□□ 0.29	not detected
CCC1	YLR220W	ISM1	P48526	1002 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	YGR035C	P53222	116 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	YLR297W	Q05899	129 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	ZPS1	Q12512	249 aa		16.84	■□□□□ 0.29
CCC1	YLR220W	MAC1	P35192	417 aa		16.83	■□□□□ 0.28
CCC1	YLR220W	TAO3	P40468	2376 aa		16.83	■□□□□ 0.28
CCC1	YLR220W	TPO2	P53283	614 aa		16.83	■□□□□ 0.28
CCC1	YLR220W	AVT3	P36062	692 aa		16.82	■□□□□ 0.28
CCC1	YLR220W	DRE2	P36152	348 aa		16.82	■□□□□ 0.28
CCC1	YLR220W	STR2	P47164	639 aa		16.82	■□□□□ 0.28
CCC1	YLR220W	YNL134C	P53912	376 aa	Known RBP	16.82	■□□□□ 0.28
CCC1	YLR220W	PLP2	Q12017	286 aa		16.82	■□□□□ 0.28
CCC1	YLR220W	TOM70	P07213	617 aa	Known RBP	16.81	■□□□□ 0.28
CCC1	YLR220W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	16.81	■□□□□ 0.28	not detected
CCC1	YLR220W	SDS3	P40505	327 aa		16.81	■□□□□ 0.28
CCC1	YLR220W	GCV2	P49095	1034 aa		16.81	■□□□□ 0.28
CCC1	YLR220W	YNL115C	P53925	644 aa		16.81	■□□□□ 0.28
CCC1	YLR220W	NAT1	P12945	854 aa	Known RBP	16.8	■□□□□ 0.28
CCC1	YLR220W	EBP2	P36049	427 aa	Known RBP	16.8	■□□□□ 0.28
CCC1	YLR220W	YHL026C	P38740	315 aa		16.8	■□□□□ 0.28
CCC1	YLR220W	VFA1	P40080	203 aa		16.8	■□□□□ 0.28
CCC1	YLR220W	LAM5	P43560	674 aa		16.8	■□□□□ 0.28
CCC1	YLR220W	DAS1	P47005	663 aa		16.8	■□□□□ 0.28
CCC1	YLR220W	FOL2	P51601	243 aa	Known RBP	16.8	■□□□□ 0.28
CCC1	YLR220W	CSR1	Q06705	408 aa	Known RBP	16.8	■□□□□ 0.28
CCC1	YLR220W	SHS1	Q07657	551 aa		16.8	■□□□□ 0.28
CCC1	YLR220W	SGT2	Q12118	346 aa	Known RBP	16.8	■□□□□ 0.28
CCC1	YLR220W	TIF1	P10081	395 aa	Known RBP	16.79	■□□□□ 0.28
CCC1	YLR220W	SCJ1	P25303	377 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	FTR1	P40088	404 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	ULI1	P43604	169 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	SPO74	P45819	413 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	CLA4	P48562	842 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	SLX4	Q12098	748 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	GIS3	Q12418	502 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	YDL206W	Q12424	762 aa		16.79	■□□□□ 0.28
CCC1	YLR220W	YKL023W	P36103	277 aa	Known RBP	16.78	■□□□□ 0.28
CCC1	YLR220W	YGR130C	P53278	816 aa		16.78	■□□□□ 0.28
CCC1	YLR220W	RPA49	Q01080	415 aa	Predicted RBP	16.78	■□□□□ 0.28
CCC1	YLR220W	RTT107	P38850	1070 aa		16.77	■□□□□ 0.28
CCC1	YLR220W	YER186C	P40101	306 aa		16.77	■□□□□ 0.28
CCC1	YLR220W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	16.77	■□□□□ 0.28	RIP-Chip
CCC1	YLR220W	ADE4	P04046	510 aa	Known RBP	16.76	■□□□□ 0.27
CCC1	YLR220W	SWI3	P32591	825 aa		16.76	■□□□□ 0.27
CCC1	YLR220W	YLR287C	Q05881	355 aa		16.76	■□□□□ 0.27
CCC1	YLR220W	HMI1	Q12039	706 aa		16.76	■□□□□ 0.27

Retrieved 100 of 5,963 RNA–protein pairs in 33.7 ms