RNA–Protein interactions for RNA: YBR235W

VHC1, Transcript of Vacuolar membrane cation-chloride cotransporter (CCC), yeast

Gene VHC1, Length 3,363 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHC1	YBR235W	SMC1	P32908	1225 aa		4.9	□□□□□ -1.63
VHC1	YBR235W	RPN10	P38886	268 aa	Known RBP	4.9	□□□□□ -1.63
VHC1	YBR235W	NPT1	P39683	429 aa	Known RBP	4.9	□□□□□ -1.63
VHC1	YBR235W	CKB1	P43639	278 aa		4.9	□□□□□ -1.63
VHC1	YBR235W	CEG1	Q01159	459 aa	Predicted RBP	4.9	□□□□□ -1.63
VHC1	YBR235W	ECM11	Q04110	302 aa		4.9	□□□□□ -1.63
VHC1	YBR235W	YDL124W	Q07551	312 aa	Known RBP	4.9	□□□□□ -1.63
VHC1	YBR235W	YRM1	Q12340	786 aa		4.9	□□□□□ -1.63
VHC1	YBR235W	MED4	Q12343	284 aa		4.9	□□□□□ -1.63
VHC1	YBR235W	RRP36	Q12481	300 aa	Predicted RBP	4.9	□□□□□ -1.63
VHC1	YBR235W	MDS3	P53094	1487 aa		4.9	□□□□□ -1.63
VHC1	YBR235W	RPO41	P13433	1351 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	GPA2	P10823	449 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	GCN3	P14741	305 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	SSE1	P32589	693 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	PAM1	P37304	830 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	SDH8	P38345	138 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	FCY21	P40039	528 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	AIM9	P40053	627 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	CNN1	P43618	361 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	MNN11	P46985	422 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	RFX1	P48743	811 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	GPI8	P49018	411 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	CWC25	P53854	179 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	COX20	Q04935	205 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	SVF1	Q05515	481 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	DON1	Q05610	365 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	YCS4	Q06156	1176 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	MAG2	Q06436	670 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	SNF2	P22082	1703 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	TEF1	P02994	458 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	PAT1	P25644	796 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	YJU2	P28320	278 aa	Predicted RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	SMC2	P38989	1170 aa	Known RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	PCF11	P39081	626 aa	Predicted RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	VHR2	P40041	505 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	PDS1	P40316	373 aa	Predicted RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	ATH1	P48016	1211 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	PTA1	Q01329	785 aa	Predicted RBP	4.89	□□□□□ -1.63
VHC1	YBR235W	UBP2	Q01476	1272 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	UIP4	Q08926	304 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	TUS1	Q06412	1307 aa		4.89	□□□□□ -1.63
VHC1	YBR235W	TOM70	P07213	617 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	STB4	P50104	949 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	BSC5	P53755	489 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	VPS75	P53853	264 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	BOP3	P53958	396 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	TBF1	Q02457	562 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	TAF9	Q05027	157 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	MCM21	Q06675	368 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	YLR001C	Q07895	862 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	ADE6	P38972	1358 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	COQ4	O13525	335 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	CPA2	P03965	1118 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	PRD1	P25375	712 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	BUD23	P25627	275 aa	Predicted RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	SUV3	P32580	737 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	AST2	P39945	430 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	SNL1	P40548	159 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	MKT1	P40850	830 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	MDV1	P47025	714 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	GCV2	P49095	1034 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	IPI3	P53877	555 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	YML020W	Q03722	664 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	TAF11	Q04226	346 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	SPC24	Q04477	213 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	SEC10	Q06245	871 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	MDM36	Q06820	579 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	YOR352W	Q08816	343 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	APN1	P22936	367 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	MCM3	P24279	971 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	SMY1	P32364	656 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	MVD1	P32377	396 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	YER137C	P40083	148 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	VPS64	Q03944	604 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	RRN11	Q04712	507 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	GLO2	Q05584	274 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	GPN2	Q08726	347 aa	Predicted RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	DDP1	Q99321	188 aa	Known RBP	4.88	□□□□□ -1.63
VHC1	YBR235W	SIR4	P11978	1358 aa		4.88	□□□□□ -1.63
VHC1	YBR235W	TRM1	P15565	570 aa	Known RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	BAS1	P22035	811 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	JNM1	P36224	373 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	MAK5	P38112	773 aa	Predicted RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	PMC1	P38929	1173 aa	Predicted RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	BOL3	P39724	118 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	MAL13	P53338	473 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	NOG1	Q02892	647 aa	Known RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	USA1	Q03714	838 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	NOB1	Q08444	459 aa	Known RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	APM4	Q99186	491 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	PWP1	P21304	576 aa	Known RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	SEC65	P29478	273 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	IRE1	P32361	1115 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	RPT1	P33299	467 aa	Known RBP	4.87	□□□□□ -1.63
VHC1	YBR235W	KTR2	P33550	425 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	MRX3	P38172	270 aa		4.87	□□□□□ -1.63
VHC1	YBR235W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	RIP-Chip
VHC1	YBR235W	YNG2	P38806	282 aa	Known RBP	4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms