RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C PRE10P21242 288 aaKnown RBP RIP-Chip data11.6□□□□□ -0.55not detected
SHM2YLR058C NUP82P40368 713 aa11.6□□□□□ -0.55
SHM2YLR058C NCS6P53088 359 aa11.6□□□□□ -0.55
SHM2YLR058C ZPR1P53303 486 aaKnown RBP11.6□□□□□ -0.55
SHM2YLR058C LCD1Q04377 747 aa11.6□□□□□ -0.55
SHM2YLR058C MET7Q08645 548 aa11.6□□□□□ -0.55
SHM2YLR058C RAM2P29703 316 aa11.59□□□□□ -0.55
SHM2YLR058C NOC2P39744 710 aaKnown RBP11.59□□□□□ -0.55
SHM2YLR058C FIS1P40515 155 aa11.59□□□□□ -0.55
SHM2YLR058C SCS3P53012 380 aa11.59□□□□□ -0.55
SHM2YLR058C GUP1P53154 560 aa11.59□□□□□ -0.55
SHM2YLR058C AFT2Q08957 416 aa11.59□□□□□ -0.55
SHM2YLR058C TFC8Q12308 588 aa11.59□□□□□ -0.55
SHM2YLR058C TRM11Q12463 433 aa11.59□□□□□ -0.55
SHM2YLR058C PFK1P16861 987 aaKnown RBP11.58□□□□□ -0.56
SHM2YLR058C HMF1P40037 129 aaKnown RBP11.58□□□□□ -0.56
SHM2YLR058C TAF13P11747 167 aa11.57□□□□□ -0.56
SHM2YLR058C TVP38P36164 337 aa11.57□□□□□ -0.56
SHM2YLR058C VPS53P47061 822 aa11.57□□□□□ -0.56
SHM2YLR058C SVF1Q05515 481 aa11.57□□□□□ -0.56
SHM2YLR058C TLG2Q08144 397 aa11.57□□□□□ -0.56
SHM2YLR058C PPS1P38148 807 aa11.56□□□□□ -0.56
SHM2YLR058C RPS7BP48164 190 aaKnown RBP11.56□□□□□ -0.56
SHM2YLR058C ECM29P38737 1868 aa11.55□□□□□ -0.56
SHM2YLR058C MRPL10P36520 322 aa11.55□□□□□ -0.56
SHM2YLR058C LSC2P53312 427 aa11.55□□□□□ -0.56
SHM2YLR058C YDL057WQ07379 328 aa11.55□□□□□ -0.56
SHM2YLR058C ICL2Q12031 575 aa11.55□□□□□ -0.56
SHM2YLR058C CDC48P25694 835 aaKnown RBP11.54□□□□□ -0.56
SHM2YLR058C BCD1P38772 366 aa11.54□□□□□ -0.56
SHM2YLR058C RPN3P40016 523 aaKnown RBP11.54□□□□□ -0.56
SHM2YLR058C PSF2P40359 213 aa11.54□□□□□ -0.56
SHM2YLR058C YGR237CP50089 785 aa11.54□□□□□ -0.56
SHM2YLR058C POX1P13711 748 aa11.53□□□□□ -0.56
SHM2YLR058C PGM2P37012 569 aaKnown RBP11.53□□□□□ -0.56
SHM2YLR058C ADE17P38009 592 aaKnown RBP11.53□□□□□ -0.56
SHM2YLR058C PSY4P38193 441 aa11.53□□□□□ -0.56
SHM2YLR058C YEL025CP39991 1188 aa11.53□□□□□ -0.56
SHM2YLR058C SEC5P89102 971 aa11.53□□□□□ -0.56
SHM2YLR058C WAR1Q03631 944 aa11.53□□□□□ -0.56
SHM2YLR058C GFD1Q04839 188 aaKnown RBP11.53□□□□□ -0.56
SHM2YLR058C SPP382Q06411 708 aaPredicted RBP11.53□□□□□ -0.56
SHM2YLR058C YPL216WQ08964 1102 aa11.53□□□□□ -0.56
SHM2YLR058C YLL058WQ12198 575 aa11.53□□□□□ -0.56
SHM2YLR058C NCR1Q12200 1170 aa11.53□□□□□ -0.56
SHM2YLR058C TCP1P12612 559 aaKnown RBP11.52□□□□□ -0.56
SHM2YLR058C YKL091CP33324 310 aaKnown RBP11.52□□□□□ -0.56
SHM2YLR058C FLR1P38124 548 aa11.52□□□□□ -0.56
SHM2YLR058C BRE5P53741 515 aaKnown RBP11.52□□□□□ -0.56
SHM2YLR058C NCS2P53923 493 aaPredicted RBP11.52□□□□□ -0.56
SHM2YLR058C ARK1P53974 638 aa11.52□□□□□ -0.56
SHM2YLR058C HCR1Q05775 265 aaKnown RBP11.52□□□□□ -0.56
SHM2YLR058C GPI13Q07830 1017 aa11.52□□□□□ -0.56
SHM2YLR058C YOL075CQ08234 1294 aa11.52□□□□□ -0.56
SHM2YLR058C PSO2P30620 661 aa11.52□□□□□ -0.57
SHM2YLR058C TIM23P32897 222 aa11.52□□□□□ -0.57
SHM2YLR058C HUL4P40985 892 aa11.52□□□□□ -0.57
SHM2YLR058C TOF1P53840 1238 aa11.52□□□□□ -0.57
SHM2YLR058C TMA16Q08687 178 aa11.52□□□□□ -0.57
SHM2YLR058C PDC1P06169 563 aaKnown RBP11.51□□□□□ -0.57
SHM2YLR058C DED1P06634 604 aaKnown RBP11.51□□□□□ -0.57
SHM2YLR058C DBP1P24784 617 aaKnown RBP11.51□□□□□ -0.57
SHM2YLR058C BCS1P32839 456 aa11.51□□□□□ -0.57
SHM2YLR058C BIM1P40013 344 aa11.51□□□□□ -0.57
SHM2YLR058C YFL034WP43564 1073 aa11.51□□□□□ -0.57
SHM2YLR058C AIP1P46680 615 aaKnown RBP11.51□□□□□ -0.57
SHM2YLR058C PRY3P47033 881 aa11.51□□□□□ -0.57
SHM2YLR058C NBP1P52919 319 aaPredicted RBP11.51□□□□□ -0.57
SHM2YLR058C YPR148CQ06523 435 aa11.51□□□□□ -0.57
SHM2YLR058C KIN82P25341 720 aa11.5□□□□□ -0.57
SHM2YLR058C ATG19P35193 415 aa11.5□□□□□ -0.57
SHM2YLR058C MDR1P53258 950 aa11.5□□□□□ -0.57
SHM2YLR058C ROD1Q02805 837 aa11.5□□□□□ -0.57
SHM2YLR058C EBS1Q03466 884 aaKnown RBP11.5□□□□□ -0.57
SHM2YLR058C SMC5Q08204 1093 aa11.5□□□□□ -0.57
SHM2YLR058C TCO89Q08921 799 aa11.5□□□□□ -0.57
SHM2YLR058C YPL277CQ08989 487 aa11.5□□□□□ -0.57
SHM2YLR058C CDC37P06101 506 aaKnown RBP11.49□□□□□ -0.57
SHM2YLR058C MAS2P11914 482 aa11.49□□□□□ -0.57
SHM2YLR058C OM45P16547 393 aa11.49□□□□□ -0.57
SHM2YLR058C DBP5P20449 482 aaKnown RBP11.49□□□□□ -0.57
SHM2YLR058C DAL7P21826 554 aa11.49□□□□□ -0.57
SHM2YLR058C MRC1P25588 1096 aa11.49□□□□□ -0.57
SHM2YLR058C MIC60P36112 540 aa11.49□□□□□ -0.57
SHM2YLR058C TFG2P41896 400 aaPredicted RBP11.49□□□□□ -0.57
SHM2YLR058C ULP1Q02724 621 aa11.49□□□□□ -0.57
SHM2YLR058C SUT2Q12286 268 aa11.49□□□□□ -0.57
SHM2YLR058C PCK1P10963 549 aa11.48□□□□□ -0.57
SHM2YLR058C TRK2P28584 889 aa11.48□□□□□ -0.57
SHM2YLR058C IRE1P32361 1115 aa11.48□□□□□ -0.57
SHM2YLR058C YEL1P34225 687 aa11.48□□□□□ -0.57
SHM2YLR058C KSP1P38691 1029 aaKnown RBP11.48□□□□□ -0.57
SHM2YLR058C ERC1P38767 581 aa11.48□□□□□ -0.57
SHM2YLR058C SKP2P42843 763 aa11.48□□□□□ -0.57
SHM2YLR058C TOS3P43637 560 aa11.48□□□□□ -0.57
SHM2YLR058C AVT1P47082 602 aa11.48□□□□□ -0.57
SHM2YLR058C YJR107WP47145 328 aa11.48□□□□□ -0.57
SHM2YLR058C PSP2P50109 593 aaKnown RBP11.48□□□□□ -0.57
SHM2YLR058C COQ9Q05779 260 aa11.48□□□□□ -0.57
SHM2YLR058C CUR1Q06469 252 aa11.48□□□□□ -0.57
Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms