RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	MRPL10	P36520	322 aa		11.93	□□□□□ -0.5
VPS60	YDR486C	NUP82	P40368	713 aa		11.93	□□□□□ -0.5
VPS60	YDR486C	UBP15	P50101	1230 aa		11.93	□□□□□ -0.5
VPS60	YDR486C	HUL5	P53119	910 aa		11.93	□□□□□ -0.5
VPS60	YDR486C	TLG2	Q08144	397 aa		11.93	□□□□□ -0.5
VPS60	YDR486C	SRD1	P09007	221 aa		11.92	□□□□□ -0.5
VPS60	YDR486C	YUR1	P26725	428 aa		11.92	□□□□□ -0.5
VPS60	YDR486C	RGT1	P32862	1170 aa		11.92	□□□□□ -0.5
VPS60	YDR486C	MSC6	Q08818	692 aa	Known RBP	11.92	□□□□□ -0.5
VPS60	YDR486C	PFK1	P16861	987 aa	Known RBP	11.91	□□□□□ -0.5
VPS60	YDR486C	PSY4	P38193	441 aa		11.91	□□□□□ -0.5
VPS60	YDR486C	MXR1	P40029	184 aa		11.91	□□□□□ -0.5
VPS60	YDR486C	FIS1	P40515	155 aa		11.91	□□□□□ -0.5
VPS60	YDR486C	ZPR1	P53303	486 aa	Known RBP	11.91	□□□□□ -0.5
VPS60	YDR486C	LSC2	P53312	427 aa		11.91	□□□□□ -0.5
VPS60	YDR486C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	11.9	□□□□□ -0.5	RIP-Chip
VPS60	YDR486C	PPS1	P38148	807 aa		11.9	□□□□□ -0.5
VPS60	YDR486C	YGR237C	P50089	785 aa		11.9	□□□□□ -0.5
VPS60	YDR486C	SCS3	P53012	380 aa		11.9	□□□□□ -0.5
VPS60	YDR486C	WAR1	Q03631	944 aa		11.9	□□□□□ -0.5
VPS60	YDR486C	SVF1	Q05515	481 aa		11.9	□□□□□ -0.5
VPS60	YDR486C	TRM11	Q12463	433 aa		11.9	□□□□□ -0.5
VPS60	YDR486C	TVP38	P36164	337 aa		11.89	□□□□□ -0.51
VPS60	YDR486C	ADE17	P38009	592 aa	Known RBP	11.89	□□□□□ -0.51
VPS60	YDR486C	BCD1	P38772	366 aa		11.89	□□□□□ -0.51
VPS60	YDR486C	HMF1	P40037	129 aa	Known RBP	11.89	□□□□□ -0.51
VPS60	YDR486C	GFD1	Q04839	188 aa	Known RBP	11.89	□□□□□ -0.51
VPS60	YDR486C	SPP382	Q06411	708 aa	Predicted RBP	11.89	□□□□□ -0.51
VPS60	YDR486C	YDL057W	Q07379	328 aa		11.89	□□□□□ -0.51
VPS60	YDR486C	MET7	Q08645	548 aa		11.89	□□□□□ -0.51
VPS60	YDR486C	TMA16	Q08687	178 aa		11.89	□□□□□ -0.51
VPS60	YDR486C	YPL216W	Q08964	1102 aa		11.89	□□□□□ -0.51
VPS60	YDR486C	RPN3	P40016	523 aa	Known RBP	11.88	□□□□□ -0.51
VPS60	YDR486C	HCR1	Q05775	265 aa	Known RBP	11.88	□□□□□ -0.51
VPS60	YDR486C	YPR148C	Q06523	435 aa		11.88	□□□□□ -0.51
VPS60	YDR486C	CDC48	P25694	835 aa	Known RBP	11.87	□□□□□ -0.51
VPS60	YDR486C	PSO2	P30620	661 aa		11.87	□□□□□ -0.51
VPS60	YDR486C	YKL091C	P33324	310 aa	Known RBP	11.87	□□□□□ -0.51
VPS60	YDR486C	MIC60	P36112	540 aa		11.87	□□□□□ -0.51
VPS60	YDR486C	PGM2	P37012	569 aa	Known RBP	11.87	□□□□□ -0.51
VPS60	YDR486C	VPS53	P47061	822 aa		11.87	□□□□□ -0.51
VPS60	YDR486C	RPS7B	P48164	190 aa	Known RBP	11.87	□□□□□ -0.51
VPS60	YDR486C	YOL075C	Q08234	1294 aa		11.87	□□□□□ -0.51
VPS60	YDR486C	NCR1	Q12200	1170 aa		11.87	□□□□□ -0.51
VPS60	YDR486C	TCP1	P12612	559 aa	Known RBP	11.86	□□□□□ -0.51
VPS60	YDR486C	BIM1	P40013	344 aa		11.86	□□□□□ -0.51
VPS60	YDR486C	HUL4	P40985	892 aa		11.86	□□□□□ -0.51
VPS60	YDR486C	AIP1	P46680	615 aa	Known RBP	11.86	□□□□□ -0.51
VPS60	YDR486C	NCS6	P53088	359 aa		11.86	□□□□□ -0.51
VPS60	YDR486C	ARK1	P53974	638 aa		11.86	□□□□□ -0.51
VPS60	YDR486C	SEC5	P89102	971 aa		11.86	□□□□□ -0.51
VPS60	YDR486C	MPE1	P35728	441 aa	Known RBP	11.85	□□□□□ -0.51
VPS60	YDR486C	YEL025C	P39991	1188 aa		11.85	□□□□□ -0.51
VPS60	YDR486C	RRD1	P40454	393 aa	Known RBP	11.85	□□□□□ -0.51
VPS60	YDR486C	TFG2	P41896	400 aa	Predicted RBP	11.85	□□□□□ -0.51
VPS60	YDR486C	TOF1	P53840	1238 aa		11.85	□□□□□ -0.51
VPS60	YDR486C	NCS2	P53923	493 aa	Predicted RBP	11.85	□□□□□ -0.51
VPS60	YDR486C	EBS1	Q03466	884 aa	Known RBP	11.85	□□□□□ -0.51
VPS60	YDR486C	GPI13	Q07830	1017 aa		11.85	□□□□□ -0.51
VPS60	YDR486C	CDC37	P06101	506 aa	Known RBP	11.84	□□□□□ -0.51
VPS60	YDR486C	POX1	P13711	748 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	OM45	P16547	393 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	MRC1	P25588	1096 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	FLR1	P38124	548 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	YFL034W	P43564	1073 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	NBP1	P52919	319 aa	Predicted RBP	11.84	□□□□□ -0.51
VPS60	YDR486C	TCO89	Q08921	799 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	YPL277C	Q08989	487 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	ICL2	Q12031	575 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	YLL058W	Q12198	575 aa		11.84	□□□□□ -0.51
VPS60	YDR486C	ECM29	P38737	1868 aa		11.83	□□□□□ -0.52
VPS60	YDR486C	DAL7	P21826	554 aa		11.83	□□□□□ -0.52
VPS60	YDR486C	MCM2	P29469	868 aa		11.83	□□□□□ -0.52
VPS60	YDR486C	YET1	P35723	206 aa		11.83	□□□□□ -0.52
VPS60	YDR486C	PSF2	P40359	213 aa		11.83	□□□□□ -0.52
VPS60	YDR486C	TOS3	P43637	560 aa		11.83	□□□□□ -0.52
VPS60	YDR486C	DED1	P06634	604 aa	Known RBP	11.82	□□□□□ -0.52
VPS60	YDR486C	PCK1	P10963	549 aa		11.82	□□□□□ -0.52
VPS60	YDR486C	KIN82	P25341	720 aa		11.82	□□□□□ -0.52
VPS60	YDR486C	TRK2	P28584	889 aa		11.82	□□□□□ -0.52
VPS60	YDR486C	TIM23	P32897	222 aa		11.82	□□□□□ -0.52
VPS60	YDR486C	ROD1	Q02805	837 aa		11.82	□□□□□ -0.52
VPS60	YDR486C	SMC5	Q08204	1093 aa		11.82	□□□□□ -0.52
VPS60	YDR486C	PDC1	P06169	563 aa	Known RBP	11.81	□□□□□ -0.52
VPS60	YDR486C	DBP5	P20449	482 aa	Known RBP	11.81	□□□□□ -0.52
VPS60	YDR486C	YEL1	P34225	687 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	ATG19	P35193	415 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	ERC1	P38767	581 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	PRY3	P47033	881 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	MDR1	P53258	950 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	BRE5	P53741	515 aa	Known RBP	11.81	□□□□□ -0.52
VPS60	YDR486C	CUR1	Q06469	252 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	NOC3	Q07896	663 aa	Predicted RBP	11.81	□□□□□ -0.52
VPS60	YDR486C	YAP7	Q08182	245 aa		11.81	□□□□□ -0.52
VPS60	YDR486C	MAK16	P10962	306 aa	Predicted RBP	11.8	□□□□□ -0.52
VPS60	YDR486C	MAS2	P11914	482 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	DBP1	P24784	617 aa	Known RBP	11.8	□□□□□ -0.52
VPS60	YDR486C	YSC83	P32792	385 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	BCS1	P32839	456 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	UBP13	P38187	747 aa		11.8	□□□□□ -0.52

Retrieved 100 of 5,963 RNA–protein pairs in 50.4 ms