RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM16	YMR128W	CTK3	P46963	296 aa	Predicted RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	PEX21	P50091	288 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	YKE2	P52553	114 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	MTO1	P53070	669 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	MEC3	Q02574	474 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	CDC6	P09119	513 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	PEP3	P27801	918 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	ECM32	P32644	1121 aa	Known RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	ATG36	P46983	293 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	ACF4	P47129	309 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	STE20	Q03497	939 aa	Known RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	SPR28	Q04921	423 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	ISR1	Q06098	443 aa	Known RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	ESF1	Q06344	628 aa	Known RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	PET111	P08468	800 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	CCC2	P38995	1004 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	APT1	P49435	187 aa	Known RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	VPS75	P53853	264 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	FRK1	Q03002	865 aa	Predicted RBP	4.26	□□□□□ -1.73
ECM16	YMR128W	DCS2	Q12123	353 aa		4.26	□□□□□ -1.73
ECM16	YMR128W	SWI5	P08153	709 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	RPS6A	P0CX37	236 aa	Known RBP	4.25	□□□□□ -1.73
ECM16	YMR128W	RPS6B	P0CX38	236 aa	Predicted RBP	4.25	□□□□□ -1.73
ECM16	YMR128W	HEM13	P11353	328 aa	Known RBP	4.25	□□□□□ -1.73
ECM16	YMR128W	SEC65	P29478	273 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	DUT1	P33317	147 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	SAP30	P38429	201 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	PSK2	Q08217	1101 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	PHO13	P19881	312 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	DAL7	P21826	554 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	URA1	P28272	314 aa	Predicted RBP	4.25	□□□□□ -1.73
ECM16	YMR128W	PTK2	P47116	818 aa	Known RBP	4.25	□□□□□ -1.73
ECM16	YMR128W	LSC2	P53312	427 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	BOP3	P53958	396 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	RBA50	Q04418	439 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	YOL098C	Q12496	1037 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	RPT3	P33298	428 aa	Known RBP	4.25	□□□□□ -1.73
ECM16	YMR128W	ALD3	P54114	506 aa		4.25	□□□□□ -1.73
ECM16	YMR128W	CHO2	P05374	869 aa	Known RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	MRT4	P33201	236 aa	Known RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	RFT1	P38206	574 aa	Predicted RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	HOT1	Q03213	719 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	YOR223W	Q12015	292 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	TPM1	P17536	199 aa	Known RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	STE11	P23561	717 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	GCD11	P32481	527 aa	Known RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	SIC1	P38634	284 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	RNT1	Q02555	471 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	TY1A-DR3	Q12441	440 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	TCB1	Q12466	1186 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	HXK1	P04806	485 aa	Known RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	SPT2	P06843	333 aa	Predicted RBP	4.24	□□□□□ -1.73
ECM16	YMR128W	PKH1	Q03407	766 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	YLR001C	Q07895	862 aa		4.24	□□□□□ -1.73
ECM16	YMR128W	HAP4	P14064	554 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	MSH3	P25336	1018 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	AKR1	P39010	764 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	KAR5	Q04746	504 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	STE6	P12866	1290 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	PAP1	P29468	568 aa	Known RBP	4.23	□□□□□ -1.73
ECM16	YMR128W	YET1	P35723	206 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	YKT6	P36015	200 aa	Known RBP	4.23	□□□□□ -1.73
ECM16	YMR128W	GRX7	P38068	203 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	SMF1	P38925	575 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	YOL075C	Q08234	1294 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	ALR1	Q08269	859 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	YPL225W	Q08971	146 aa	Known RBP	4.23	□□□□□ -1.73
ECM16	YMR128W	GIN4	Q12263	1142 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	PGI1	P12709	554 aa	Known RBP	4.23	□□□□□ -1.73
ECM16	YMR128W	GUT2	P32191	649 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	MET1	P36150	593 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	RPN10	P38886	268 aa	Known RBP	4.23	□□□□□ -1.73
ECM16	YMR128W	RGD2	P43556	714 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	SDH5	Q08230	162 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	PPM2	Q08282	695 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	PTC5	Q12511	572 aa		4.23	□□□□□ -1.73
ECM16	YMR128W	SAC6	P32599	642 aa	Known RBP	4.22	□□□□□ -1.73
ECM16	YMR128W	GRS1	P38088	690 aa	Known RBP	4.22	□□□□□ -1.73
ECM16	YMR128W	ATG3	P40344	310 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	LYS14	P40971	790 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	ISU1	Q03020	165 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	YCG1	Q06680	1035 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	ATG9	Q12142	997 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	RNA1	P11745	407 aa	Known RBP	4.22	□□□□□ -1.73
ECM16	YMR128W	SLD2	P34252	453 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	MIC19	P43594	170 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	CLA4	P48562	842 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	YGR237C	P50089	785 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	ATG23	Q06671	453 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	RIM15	P43565	1770 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	YBL086C	P38177	466 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	CCT4	P39078	528 aa	Known RBP	4.22	□□□□□ -1.73
ECM16	YMR128W	HUL4	P40985	892 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	YBP2	P53169	641 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	VPS38	Q05919	439 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	RSF2	P46974	1380 aa		4.22	□□□□□ -1.73
ECM16	YMR128W	MIP1	P15801	1254 aa		4.21	□□□□□ -1.73
ECM16	YMR128W	OPI1	P21957	404 aa		4.21	□□□□□ -1.73
ECM16	YMR128W	RER2	P35196	286 aa		4.21	□□□□□ -1.73
ECM16	YMR128W	ADE17	P38009	592 aa	Known RBP	4.21	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 1191.3 ms